scholarly journals Soil Microbial Differences under Unpalatable Stellera Chamaejasme and Neighboring Palatable Elymus Nutans in Alpine Meadows

2021 ◽  
Author(s):  
Jianguo Ma
Keyword(s):  
Species Richness ◽  
Bacterial Species ◽  
Animal Health ◽  
Total Carbon ◽  
Soil Microbiome ◽  
Soil Biodiversity ◽  
Significant Difference ◽  
Elymus Nutans ◽  
Stellera Chamaejasme ◽  
Bacteria And Fungi

Stellera chamaejasme L. is a fast-spreading unpalatable poisonous plant that grows in the alpine grasslands of the Qinghai-Tibetan Plateau (QTP). The impacts of unpalatable plant species spread on animal health and plant community have been well studied, but studies into their effects on belowground organisms and processes are rare. We carried out a soil metabarcoding study using Illumina MiSeq sequencing to investigate whether the soil bacteria and fungi communities of Stellera are different to the soil microbiome of neighboring palatable grass Elymus nutans Griseb. Total carbon and nitrogen, the ratio of carbon to nitrogen, ammonium nitrogen, and microbial biomass carbon were all significantly greater in Stellera soil compared to Elymus soil, while no significant differences were observed for gravimetric soil moisture, pH or nitrate nitrogen. There were no significant differences in bacterial and fungal abundance between Stellera and Elymus soil. The bacterial species richness was significantly lower in Stellera soil but no significant difference was observed for fungal species richness. The beta diversity and community composition of bacteria and fungi were markedly different between soils. The presence of bacterial phyla Actinobacteria and Verrucomicrobia, and fungal phyla, Basidiomycota and Glomeromycota, were significantly greater under Stellera soil. This study demonstrated that the spread of undesirable unpalatable plants can potentially disrupt existing plant-soil-microbe associations with potential consequences for grassland soil biodiversity and ecosystem functioning.

scholarly journals Soil microbial diversity in organic and non-organic pasture systems

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e11184
Author(s):  
Mohan Acharya ◽  
Amanda J. Ashworth ◽  
Yichao Yang ◽  
Joan M. Burke ◽  
Jung Ae Lee ◽  
...  
Keyword(s):  
Species Richness ◽  
Microbial Diversity ◽  
Bacterial Species ◽  
Soil Microbiome ◽  
Organic Soils ◽  
Pasture Management ◽  
Soil Microbial Diversity ◽  
Soil Microbial ◽  
Organic Systems ◽  
Microbiome Diversity

Understanding the effects of organic pasture management on the soil microbiome is important for sustainable forage production since soil microbiome diversity contributes to improved nutrient cycling, soil structure, plant growth, and environmental resiliency; however, the soil microbiome response to pasture management is largely unknown. This study assessed the soil microbial diversity, richness, and community structure following 10 years of pasture management (organic or non-organic) of the V4 region of the 16S rRNA using the Illumina MiSeq platform. Soil samples were collected from 0–15 cm in July and August from 2017–2018 and soil nutrient properties (nutrients, carbon, nitrogen, and pH) quantified and correlated with soil microbial diversity. Overall, greater soil bacterial species richness (P ≤ 0.05) occurred in organic relative to non-organic (conventional) systems. Management affected bacterial species richness (Chao1), with greater richness occurring in organic pasture soils and less richness occurring in non-organic systems (P ≤ 0.05). Similarly, management affected bacterial evenness (Simpson’s index), with a more diverse community occurring in organically managed soils relative to non-organic pastures (P ≤ 0.05). Linear discriminant analysis effect size analysis showed statistically significant and biologically consistent differences in bacterial taxa in organic compared with non-organic soils. Therefore, there was a shift in bacterial community structure in organic relative to non-organic soils (P ≤ 0.05). Additionally, soil nutrients (Fe, Mg, Ni, S, Al, K, Cd, and Cu), pH, C, and N were correlated with one or more dominant bacterial phyla (Gemmatimonadetes, Planctomycetes, Firmicutes, Chloroflexi, Actinobacteria, and Acidobacteria). Overall, pasture management affected soil microbial diversity, with greater diversity occurring in organic than non-organic systems, likely owing to applications of organic poultry litter in organic systems compared to non-organic management (use of inorganic-fertilizers and herbicides). Results indicate that when pastures are converted to organic production systems, soil microbial richness and diversity may increase, thereby resulting in enhanced soil microbiome diversity and overall ecosystem services.

scholarly journals Toxicity of ciprofloxacin and sulfamethoxazole to marine periphytic algae and bacteria

2014 ◽  
Author(s):  
Henrik Johansson ◽  
Lisa Janmar ◽  
Thomas Backhaus
Keyword(s):  
Carbon Source ◽  
Bacterial Species ◽  
Control Level ◽  
Algal Species ◽  
Total Carbon ◽  
Static System ◽  
Utilization Pattern ◽  
Carbon Source Utilization ◽  
Swedish West Coast ◽  
Significant Difference

Ciprofloxacin and sulfamethoxazole are two antibiotics commonly detected in the aquatic environment, but information on their toxicity towards natural microbial communities is largely absent. In particular no data are available for marine microorganisms. Aim of the current study was therefore to evaluate the chronic toxicity of ciprofloxacin and sulfamethoxazole on natural marine biofilms (periphyton), a complex ecological community comprising a variety of bacterial and algal species. The biofilms were sampled along the Swedish west coast and subsequently exposed over 4 days in a semi-static system to a concentration series of each antibiotic. Effects on the bacterial part of the periphyton community were assessed using Biolog Ecoplates, reflecting total respiration and functional diversity of the bacterial community. Exposure to either antibiotic resulted in a clear concentration-response relationship with EC10 and EC50 values for the inhibition of total carbon source utilization of 46.1 nmol/L and 490.7 nmol/L for ciprofloxacin, respectively 56 and 1073 nmol/L for sulfamethoxazole. The NOEC for ciprofloxacin was 26 nmol/L, with a minimum significant difference of 19.24%, for sulfamethoxazole it was 140 nmol/L with a minimum significant difference of 14%. Multivariate data exploration of the whole carbon source utilization pattern confirmed these results. The data indicate that sulfamethoxazole leads to a general decrease in carbon source utilization, while ciprofloxacin exposure leads to a re-arrangement of the carbon-utilization pattern in the region of 20-50% effect. This corresponds with the higher specificity of ciprofloxacin for certain bacterial species. Effects on the algal part of the communities were evaluated by analyzing the amount and composition of photosynthetic pigments, and neither ciprofloxacin nor sulfamethoxazole caused any inhibitory effects up to the maximum tested concentration of 9 000 nmol/L. However, sulfamethoxazole exposure did lead to a significant stimulation (75% above control level) of the total pigment content of the biofilm already at the lowest tested concentration of 5 nmol/L. The stimulation then decreased with increasing concentrations to finally return to control level at 3 000 nmol/L. No shifts in the relative pigment composition were observed, indicating a generally increased algal biomass without major shifts in community composition.

scholarly journals The microbial diversity and structure in peat land forest in Indonesia

2019 ◽  
Vol 5 (1) ◽  
pp. 133-144
Author(s):  
MJH Talukder ◽  
Hui Sun
Keyword(s):  
Species Richness ◽  
Peat Soil ◽  
Bacterial Species ◽  
Mineral Soil ◽  
The Other ◽  
Swamp Forest ◽  
Peat Swamp Forest ◽  
Soil P ◽  
Peat Swamp ◽  
Significant Difference

Soil of tropical forest ecosystem plays very crucial part in controlling the universal carbon cycle. The isolation of microorganisms and their identification are important for understanding their vital role on transformation of organic matter of this ecosystem. Soil storage maximum microbial genetic diversity because of it’s a multilayered environment. No complete methods were discovered yet to cultivate majority of soil microorganisms. A little is known about microbial structure and their essentiality in tropical peat lands compared to most other terrestrial and oceanic habitats. In providing insight to the impacts of land-use of peat land on microbes in Central Kalimantan, Borneo Indonesia, we examined the community structure and diversity of bacteria and fungi in different peat forest soil including: i) natural peat swamp forest (well mixed swamp forest type); ii) disturbed peat soil and iii) mineral soils by using 454 pyrosequencing technology. The results showed that no significant difference was found for diversity and evenness among the sites of fungal community. However, natural peat swamp forest had the highest species richness (Chao1), which was significantly higher than the other two sites (P<0.05 and P<0.05). According to the OTUs analysis four fungi phyla were obtained of which 45 species were classified. The Ascomycota was the most abundant phylum, followed by Basidiomycota, Zygomycota and Glomeromycota. The natural peat swamp forest and disturbed peat soil harbored the maximum number Ascomycota. On the other hand, mineral soil and natural peat soil contained the highest number of Basidiomycota. The top species in natural peat swamp forest included Sugiyamaella paludigena, Polyancora globosa and Ganoderma gibbosum. The mineral soil enriched the abundance of Penicillium herquei, Sugiyamaella paludigena and the disturbed peat soil contained the highest frequency of Polyancora globosa, Gymnopilus lepidotus. According to the PCoA analysis, the community structure of fungus in natural peat soil differed significantly from mineral soil (P=0.04) and disturbed peat soil (P=0.039). No significant difference was found for bacterial species richness (Chao1) among the sites. The diversity of bacteria in disturbed peat soil significantly differed from the other sites (P<0.05 and P<0.05). eleven bacterial phyla and 53 genera were examined. All of the three sites contained the similar abundance of Proteobacteria. The natural peat swamp forest and disturbed peat soil harbored the most abundant Acidobactria. Genera Mycobacterium, Gp1, Gp13, Gp2, Burkholderia, Actinospica, Aciditerrimonas were found in all the sites. Genera Granulibacter, Gp4, Acidisoma, Clostridium_sensu, Clostridium_ XI were only observed in natural peat swamp forest. Genera Rudaea, Rhodopila, Streptomycetes were found only mineral soil. The PCoA analysis showed that the structure of bacteria in natural peat swamp forest significantly differed from the disturbed peat soil (P=0.045). Overall, the bacterial species richness and diversity are more among the sites than of the fungi. J. Biodivers. Conserv. Bioresour. Manag. 2019, 5(1): 133-144

scholarly journals Toxicity of ciprofloxacin and sulfamethoxazole to marine periphytic algae and bacteria

2014 ◽  
Author(s):  
Henrik Johansson ◽  
Lisa Janmar ◽  
Thomas Backhaus
Keyword(s):  
Carbon Source ◽  
Bacterial Species ◽  
Control Level ◽  
Algal Species ◽  
Total Carbon ◽  
Static System ◽  
Utilization Pattern ◽  
Carbon Source Utilization ◽  
Swedish West Coast ◽  
Significant Difference

Ciprofloxacin and sulfamethoxazole are two antibiotics commonly detected in the aquatic environment, but information on their toxicity towards natural microbial communities is largely absent. In particular no data are available for marine microorganisms. Aim of the current study was therefore to evaluate the chronic toxicity of ciprofloxacin and sulfamethoxazole on natural marine biofilms (periphyton), a complex ecological community comprising a variety of bacterial and algal species. The biofilms were sampled along the Swedish west coast and subsequently exposed over 4 days in a semi-static system to a concentration series of each antibiotic. Effects on the bacterial part of the periphyton community were assessed using Biolog Ecoplates, reflecting total respiration and functional diversity of the bacterial community. Exposure to either antibiotic resulted in a clear concentration-response relationship with EC10 and EC50 values for the inhibition of total carbon source utilization of 46.1 nmol/L and 490.7 nmol/L for ciprofloxacin, respectively 56 and 1073 nmol/L for sulfamethoxazole. The NOEC for ciprofloxacin was 26 nmol/L, with a minimum significant difference of 19.24%, for sulfamethoxazole it was 140 nmol/L with a minimum significant difference of 14%. Multivariate data exploration of the whole carbon source utilization pattern confirmed these results. The data indicate that sulfamethoxazole leads to a general decrease in carbon source utilization, while ciprofloxacin exposure leads to a re-arrangement of the carbon-utilization pattern in the region of 20-50% effect. This corresponds with the higher specificity of ciprofloxacin for certain bacterial species. Effects on the algal part of the communities were evaluated by analyzing the amount and composition of photosynthetic pigments, and neither ciprofloxacin nor sulfamethoxazole caused any inhibitory effects up to the maximum tested concentration of 9 000 nmol/L. However, sulfamethoxazole exposure did lead to a significant stimulation (75% above control level) of the total pigment content of the biofilm already at the lowest tested concentration of 5 nmol/L. The stimulation then decreased with increasing concentrations to finally return to control level at 3 000 nmol/L. No shifts in the relative pigment composition were observed, indicating a generally increased algal biomass without major shifts in community composition.

533 IMPACT OF LOCAL MICROBIOME ON THE ONSET OF ESOPHAGEAL ADENOCARCINOMA FOR THE DEVELOPMENT OF A STRATEGY FOR PREVENTION AND TREATMENT

2020 ◽  
Vol 33 (Supplement_1) ◽  
Author(s):  
S Ricchitelli
Keyword(s):  
Species Richness ◽  
Esophageal Adenocarcinoma ◽  
Early Stage ◽  
Bacterial Species ◽  
Alpha Diversity ◽  
P Value ◽  
Bacterial Strains ◽  
Bacterial Gene ◽  
Microbial Species ◽  
Significant Difference

Abstract   Esophageal adenocarcinoma (EAC) is one of the most aggressive gastrointestinal tumor. High mortality is due to difficulties in diagnosis at an early stage and to its biological aggressive features. Little is know about the association between esophageal microbiome dysbiosis and EAC pathogenesis. The aim of the study is the identification of a specific esophageal local microbiota that can be related to the pathogenesis and to the onset of EAC Methods We investigated the resident microbiome in 38 biopsies from Tumoral (T) and Non-Tumoral (NT) tissues obtained from 19 patients submitted to distal-EAC, cardiac-EAC, ESCC resection in Upper GI Surgery Division, Humanitas Research Hospital (Rozzano, Milano). We have analyzed the microbiota in biopsies obtained from EAC Tumoral tissues (T) and Non-Tumoral tissues (NT). After genomic DNA extraction the V3V4-hypervariable regions of the 16S-rRNA bacterial gene were amplified and sequenced on MiSeq Illumina sequencer. The Bioinformatic Data Analysis has been perfomed using the CLC Genomic Workbench. Results Alpha diversity analysis showed an increased microbial species richness in Esophageal Squamo-Cellular Carcinoma (ESCC) respect to distal/cardiac EAC and tissues without metaplasia. PERMANOVA statistical analysis was applied to estimate Beta Diversity significance. Bray-Curtis index showed a statistically significant different microbiome composition when comparing both cardiac and distal EAC versus ESCC (p-value 0.022 and 0.010 respectively) and when comparing samples with and without metaplasia. Relative abundances analysis obtained after the comparison of distal EAC, cardiac EAC and ESCC identified specific bacterial species in each group. Streptococcus genus is present only in cardiac EAC, Helicobacter pylori only in distal EAC. Conclusion Our study evidenced an increased microbial species richness in samples deriving from ESCC compared to EAC and samples without metaplasia. A significant difference was found comparing EAC with ESCC or with/without metaplasia tissues, mirroring a reduced biodiversity in EAC and metaplasia. We speculated a generalized alteration of the local microbiome from healthy to diseased tissue, characterized by certain bacterial strains that developed through the creation of a chronic inflammatory milieu that triggers the carcinogenic cascade.

Assemblage Patterns of Hymenoptera at Different Elevations of Gunung Datuk, Rembau

2017 ◽  
Vol 14 (2) ◽  
pp. 1 ◽  
Author(s):  
Noor Nasuha Abd Aziz ◽  
Siti Khairiyah Mohd Hatta ◽  
Idris Abd Ghani ◽  
Saiyid Jalaluddin Saiyid Shaifuddin
Keyword(s):  
Species Richness ◽  
Diversity Index ◽  
High Elevation ◽  
Significant Difference ◽  
Index Site ◽  
Evenness Index ◽  
Abundance And Diversity ◽  
Richness Index ◽  
Paired T Test ◽  
Malaise Traps

A study on abundance and diversity of Hymenoptera was conducted in Gunung Datuk, Rembau. Samplings were conducted from November 2014 to February 2015 using six Malaise traps. Three traps were placed at Site 1 at 700m height for high elevation and the remaining traps were placed at Site 2 at 200m height for low elevation. A total number of 221 Hymenopteran were collected which consist of nine families namely Ichneumonidae, Formicidae, Braconidae, Bethylidae, Evaniidae, Tiphiidae, Vespidae, Pompilidae and Apidae. In this study, 93 individuals were obtained from Site 1, comprising nine families and 43 morphospecies while 127 individuals were obtained from Site 2 with nine families and 45 morphospecies. Formicidae was the most dominant family collected from both sites with a total of 104 individuals while the least family recorded was Apidae with only one individual. Shannon’s Weiner Diversity Index (H’) showed Site 1 had the higher diversity value with H’ = 3.17 compared to Site 2 with value H’ = 3.12. For Evenness Index, Site 1 had higher value compared to Site 2 with E’ = 0.84 and E’ = 0.82 respectively. Moreover, for Margalef Richness Index, Site 1 recorded R’ = 9.24 while site two recorded R’ = 9.08 which concluded that Site 1 had higher species richness compared to Site 2. Paired t-test showed that both sites had no significant difference with p>0.05. Overall study showed that the diversity and abundance of Hymenoptera in Gunung Datuk were low since the value of H’ is less than 3.50.

Assessment of Bacterial Contamination of Orthodontic Arch wire

2019 ◽  
Vol 31 (1) ◽  
pp. 48-51
Author(s):  
Suha S Hassan ◽  
Nidhal H. Ghaib ◽  
Batool H Al-Ghurabi
Keyword(s):  
Bacterial Contamination ◽  
Microbial Contamination ◽  
Ethylenediaminetetraacetic Acid ◽  
Bacterial Species ◽  
Brain Heart Infusion ◽  
Control Groups ◽  
Dental Practitioners ◽  
Significant Difference ◽  
Bacillus Spp ◽  
Droplet Transmission

Background: The microorganisms can impend the life of health care professional and particularly the dental practitioners. They can be transmitted by different ways like airborne and droplet transmission. The current study was carried out to identify whether the arch wires that received from the manufactures are free from microbial contamination and to determine the bacterial species attached to the arch wires. Materials and Methods: This study involved eighty samples, consisted of two types of arch wires (nitinol and stainless-steel) from four companies (3M, G&H, Jiscop, OrthoTechnology). These wires inserted in a plane tube that contains 10 -ml of (Tris [tris(hydroxymethyl)aminomethane] and EDTA (ethylenediaminetetraacetic acid) tris-EDTA and brain heart infusion (BHI) broth. A 0.1 ml was withdrawn from the tube and spread on agar plates. The control groups consist of 16 plane tube (8 tubes with tris-EDTA and other 8 tubes with (BHI). Results: Microbial sampling yielded growth from 5 of the 80 arch wires. The predominant bacteria that isolated were Bacillus spp. No growth was recovered from 75 of the samples and from controls. The bacteria were isolated by BHI reagent and no growth was observed by tris-EDTA reagent with statistically significant difference (P<0.05). The Bacillus spp. found only in the G&H and Jiscop companies, however, no statistically significant difference was found among them (P>0.05). With regard to the presence and distribution of bacteria according to the types of wires, the present results clarified that cases of contamination with Bacillus spp. were found in the nitinol arch wires with statistically significant difference (P<0.05). Conclusions: The results of the current study revealed low count of bacterial contamination in the two types of companies (G&H and Jiscop). Not all materials that received from the manufactures are free from contamination and an effective sterilization regimen is needed to avoid cross-contamination.

Оrganic Meat Production of Broiler Chickens Hubbard Redbro Cross

2020 ◽  
Keyword(s):  
Broiler Chickens ◽  
Raw Materials ◽  
Animal Health ◽  
Meat Products ◽  
Poultry Meat ◽  
Meat Production ◽  
Significant Difference ◽  
Environmentally Safe ◽  
The Impact

This article presents the results of studying the impact of housing and feeding conditions on broiler chickens of Hubbard RedBro cross, as well as the quality of products obtained when using floor and cage content, in a farm. It established that when receiving a mixed feed of own production using feed raw materials grown on a farm without the use of pesticides, a statistically significant decrease in potentially dangerous substances for animal health is recorded. Compared with factory feed, it has reduced the content of pesticides by 14 times, and mercury and arsenic by 24 times, cadmium by five times, and lead by ten times. The results of the study of economic indicators of growing Hubbard RedBro cross broiler chickens, as well as the chemical composition and quality of carcasses, indicated that there was no significant difference between the floor and cell conditions of keeping. Still, the use of a diet based on eco-feeds contributed to a statistically significant decrease in the concentration of toxic metals in the muscles of the poultry of the experimental groups. As a result, it found that the use of the studied compound feed in the diets of broiler chickens increased the indicators of Biosafety and ensured the production of environmentally safe ("organic") poultry meat products.

scholarly journals Improvement of Soil Microbial Diversity through Sustainable Agricultural Practices and Its Evaluation by -Omics Approaches: A Perspective for the Environment, Food Quality and Human Safety

2021 ◽  
Vol 9 (7) ◽  
pp. 1400
Author(s):  
Marta Bertola ◽  
Andrea Ferrarini ◽  
Giovanna Visioli
Keyword(s):  
Microbial Diversity ◽  
Food Quality ◽  
Plant Biomass ◽  
Soil Microbial Communities ◽  
Well Being ◽  
Plant Health ◽  
Soil Microbiome ◽  
Soil Microbial Diversity ◽  
Soil Biodiversity ◽  
Soil Microbial

Soil is one of the key elements for supporting life on Earth. It delivers multiple ecosystem services, which are provided by soil processes and functions performed by soil biodiversity. In particular, soil microbiome is one of the fundamental components in the sustainment of plant biomass production and plant health. Both targeted and untargeted management of soil microbial communities appear to be promising in the sustainable improvement of food crop yield, its nutritional quality and safety. –Omics approaches, which allow the assessment of microbial phylogenetic diversity and functional information, have increasingly been used in recent years to study changes in soil microbial diversity caused by agronomic practices and environmental factors. The application of these high-throughput technologies to the study of soil microbial diversity, plant health and the quality of derived raw materials will help strengthen the link between soil well-being, food quality, food safety and human health.

The impact of fibropapillomatosis on clinical characteristics, blood gas, plasma biochemistry, and hematological profiles in juvenile green turtles ( Chelonia mydas)

2020 ◽  
Vol 96 (4) ◽  
pp. 723-734
Author(s):  
Tsung-Hsien Li ◽  
Chao-Chin Chang
Keyword(s):  
White Blood Cells ◽  
Extracellular Fluid ◽  
Chelonia Mydas ◽  
Sea Turtle ◽  
Total Carbon ◽  
Blood Gas ◽  
Green Turtles ◽  
Cell Counts ◽  
Significant Difference ◽  
The Impact

Fibropapillomatosis (FP) is a tumor- forming disease that afflicts all marine turtles and is the most common in green turtles (Chelonia mydas). In this study, the morphometric characteristics, blood gas, biochemistry, and hematological profiles of 28 (6 FP-positive and 22 FP-negative) green turtles from the coast of Taiwan were investigated. The results indicated that body weight ( P < 0.001) and curved carapace length (CCL; P < 0.001) in green turtles with FP were significantly higher than in turtles without FP. Furthermore, green turtles with FP had a significantly lower value of hemoglobin (HB; P = 0.010) and packed cell volume (PCV; P = 0.005) than turtles without FP. Blood cell counts of white blood cells (WBC; P = 0.008) and lymphocytes ( P = 0.022) were observed with significant difference; green turtles with FP had lower counts than turtles without FP. In addition, turtles with FP had significantly higher pH ( P = 0.036), base excess in extracellular fluid (BEecf; P = 0.012), bicarbonate (HCO3– ; P = 0.008), and total carbon dioxide (TCO2 ; P = 0.025) values than turtles without FP. The findings of this study provide valuable clinical parameters for the medical care of the species in sea turtle rehabilitation centers and help us to understand the physiological response of green turtles to different tumor-forming conditions.

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