scholarly journals Heterologous expression of a novel β-1, 4-glucosidase originated from Aspergillus fresenii and its enzymatic characters

2019 ◽  
Author(s):  
Yongzhi Yang ◽  
Jian Wang ◽  
Henan Guo ◽  
Yunhe Cao

Abstract Background: β-1, 4-glucosidases play important roles in the degradation of lignocellulosic biomass. It helps generate glucose from cellobiose and oligosaccharides, which could enhance the productivity in biorefinery and bioconversion process for energy and chemicals. Discovering novel β-1, 4-glucosidases can provide broader possibilities and understanding. The purpose of this study was to find a new β-1, 4-glucosidase in Aspergillus fresenii by an efficient method based on the high throughput sequencing technique. Results: With the high throughput sequencing technique, a novel β-1, 4-glucosidase, named bgl T2, was cloned from Aspergillus fresenii , which was 2586 bp encoding 862 amino acid residues based on the sequencing analysis. Its amino acid sequence shared 91%, 80%, 80%, and 78% identity with the β-glucosidases of Aspergillus steynii IBT 23096 (XP_024702113.1), Aspergillus oryzae (5FJJ_A), Aspergillus aculeatus (P48825.1), and Aspergillus fumigatus A1163 (B0XPE1.1), respectively. The β-glucosidase bgl T2 gene was optimized according to the codon bias of Komagataella phaffii (≡ Pichia pastoris (nom. illeg.)) and synthetized. The optimized bgl T2 gene was inserted into plasmid pPICZαA, and transformed into K.phaffii X33 for its heterologous expression and enzymatic characters determination. The heterologous expressed β-glucosidase bgl T2 presented the highest activity at 55 °C and pH 5.5. When bgl T2 treated in citric acid- disodium hydrogen phosphate buffer (from pH 2.5 to pH 8.0) for one hour, the enzymatic activity was stable for pH 3.0 to pH 8.0 treatment, while the enzymatic activity dropped down to 22% with the pH 2.5 treatment. The thermostability half-life of bgl T2 was 9 min 36 s, 4 min 22 s, 117 s, and 68 s under 50 °C, 55 °C, 60 °C, 65 °C incubation, respectively. The Michaelis constant ( K m ) of bgl T2 was 0.0007 mol/L. The maximum rate of bgl T2 theoretical enzymatic reaction ( V max ) was 9×10 -8 mol/L/s. In a 5 L fermentation vessel, the recombinant K.phaffii X33 could yield a β-1, 4-glucosidase activity of 4.45 U/mL after 96 h methanol inducement. Conclusions: As the important enzyme to release glucose in the hydrolysis processes of cellulose, the novel bgl T2 provide a possibility to apply in bioenergy engineering, food processing, feed industry, and nutritional study, etc. This study also developed a path to obtain new enzymes depending on high throughput sequencing technique.

2021 ◽  
Vol 22 (11) ◽  
pp. 5513
Author(s):  
Sander Plessers ◽  
Vincent Van Deuren ◽  
Rob Lavigne ◽  
Johan Robben

The combination of phage display technology with high-throughput sequencing enables in-depth analysis of library diversity and selection-driven dynamics. We applied short-read sequencing of the mutagenized region on focused display libraries of two homologous nucleic acid modification eraser proteins—AlkB and FTO—biopanned against methylated DNA. This revealed enriched genotypes with small indels and concomitant doubtful amino acid motifs within the FTO library. Nanopore sequencing of the entire display vector showed additional enrichment of large deletions overlooked by region-specific sequencing, and further impacted the interpretation of the obtained amino acid motifs. We could attribute enrichment of these corrupted clones to amplification bias due to arduous FTO display slowing down host cell growth as well as phage production. This amplification bias appeared to be stronger than affinity-based target selection. Recommendations are provided for proper sequence analysis of phage display data, which can improve motive discovery in libraries of proteins that are difficult to display.


Antibiotics ◽  
2018 ◽  
Vol 7 (2) ◽  
pp. 27 ◽  
Author(s):  
Marta Maciejewska ◽  
Magdalena Całusińska ◽  
Luc Cornet ◽  
Delphine Adam ◽  
Igor Pessi ◽  
...  

GYNECOLOGY ◽  
2021 ◽  
Vol 23 (5) ◽  
pp. 441-444
Author(s):  
Zhanna I. Glinkina ◽  
Elena V. Kulakova ◽  
Elena G. Lebedeva ◽  
Varvara S. Kuzmicheva ◽  
Nataliya P. Makarova

The frequency of structural chromosomal transpositions can range from 1.8 to 8% among patients with reproductive disorders. There are several types of the rarest chromosomal abnormalities: insertion (insertion of a chromosomal region) and inversion (rotation of a chromosome region). This article describes a clinical case of the infertility treatment using assisted reproductive technologies in a woman with a rare chromosomal abnormality: simultaneous insertion and inversion of chromosomes 46, XX, ins (13;4)(q34;p14p15.3), inv(4)(p14q12). The structure and frequency of chromosomal aberrations were determined by high-throughput sequencing in preimplantation embryos. The result of the sequencing analysis showed that unbalanced variants for a known pathology were detected in 9 (56.3%) out of 16 observations, while in 6 (37%) only for a pathology known in the karyotype and in 3 (19%) they were presented simultaneously with the pathology of other chromosomes or with mosaicism. According to the results of the study, in preimplantation embryos, where one of the parents had chromosomal abnormalities, in addition to unbalanced variants, there is aneuploidy of other chromosomes not involved in the known pathology. They are described in 3 (21%) out of 14 observations of all identified pathology. In this regard, patients with aberrations in the karyotype are recommended, whenever possible, to carry out preimplantation genetic testing of structural rearrangements by methods allowed to analyze all chromosomes simultaneously. For example, high-throughput sequencing on the Illumina platform may become an alternative for prenatal diagnostics, which is performed in fertile couples with high risk of having a child with hereditary or congenital disorders. In the case of detection of chromosomal changes in the fetus, patients are faced with a number of ethical issues related to the necessity for medical abortion, which may contradict their religious and moral convictions.


2020 ◽  
Vol 134 ◽  
pp. 349-358
Author(s):  
W.-H. Chen ◽  
S.-J. Wu ◽  
X.-L. Sun ◽  
K.-M. Feng ◽  
K. Rahman ◽  
...  

2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Jianguang Hu ◽  
Xiaoshi Zhong ◽  
Jing Yan ◽  
Daoyuan Zhou ◽  
Danping Qin ◽  
...  

PLoS ONE ◽  
2020 ◽  
Vol 15 (4) ◽  
pp. e0230924
Author(s):  
Ao-Nan Xia ◽  
Jun Liu ◽  
Da-Cheng Kang ◽  
Hai-Guang Zhang ◽  
Ru-Hua Zhang ◽  
...  

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