Brain Tumor Segmentation Based on Region of Interest-Aided Localization and Segmentation U-Net

2021 ◽  
Author(s):  
Shidong Li ◽  
Jianwei Liu ◽  
Zhanjie Song
Keyword(s):  
Image Processing ◽  
Deep Learning ◽  
Brain Tumor ◽  
Medical Image ◽  
Brain Mri ◽  
Medical Image Processing ◽  
Tumor Segmentation ◽  
Dice Similarity Coefficient ◽  
Brain Tumor Segmentation ◽  
The Impact

Abstract Since magnetic resonance imaging (MRI) has superior soft tissue contrast, contouring (brain) tumor accurately by MRI images is essential in medical image processing. Segmenting tumor accurately is immensely challenging, since tumor and normal tissues are often inextricably intertwined in the brain. It is also extremely time consuming manually. Late deep learning techniques start to show reasonable success in brain tumor segmentation automatically. The purpose of this study is to develop a new region-ofinterest-aided (ROI-aided) deep learning technique for automatic brain tumor MRI segmentation. The method consists of two major steps. Step one is to use a 2D network with U-Net architecture to localize the tumor ROI, which is to reduce the impact of normal tissue’s disturbance. Then a 3D U-Net is performed in step 2 for tumor segmentation within identified ROI. The proposed method is validated on MICCAI BraTS 2015 Challenge with 220 high Gliomas grade (HGG) and 54 low Gliomas grade (LGG) patients’ data. The Dice similarity coefficient and the Hausdorff distance between the manual tumor contour and that segmented by the proposed method are 0.876 ±0.068 and 3.594±1.347 mm, respectively. These numbers are indications that our proposed method is an effective ROI-aided deep learning strategy for brain MRI tumor segmentation, and a valid and useful tool in medical image processing.

scholarly journals Deep Learning for Brain Tumor Segmentation: A Survey of State-of-the-Art

2021 ◽  
Vol 7 (2) ◽  
pp. 19
Author(s):  
Tirivangani Magadza ◽  
Serestina Viriri
Keyword(s):  
Image Analysis ◽  
Deep Learning ◽  
Brain Tumor ◽  
Quantitative Analysis ◽  
Medical Image ◽  
State Of The Art ◽  
Medical Image Analysis ◽  
Building Blocks ◽  
Tumor Segmentation ◽  
Brain Tumor Segmentation

Quantitative analysis of the brain tumors provides valuable information for understanding the tumor characteristics and treatment planning better. The accurate segmentation of lesions requires more than one image modalities with varying contrasts. As a result, manual segmentation, which is arguably the most accurate segmentation method, would be impractical for more extensive studies. Deep learning has recently emerged as a solution for quantitative analysis due to its record-shattering performance. However, medical image analysis has its unique challenges. This paper presents a review of state-of-the-art deep learning methods for brain tumor segmentation, clearly highlighting their building blocks and various strategies. We end with a critical discussion of open challenges in medical image analysis.

scholarly journals Automatic MRI Brain Tumor Segmentation Techniques: A Survey

2021 ◽  
Vol 16 (2) ◽  
pp. 25
Author(s):  
Otman Basir ◽  
Kalifa Shantta
Keyword(s):  
Image Segmentation ◽  
Brain Tumor ◽  
Medical Image ◽  
Medical Image Analysis ◽  
Brain Mri ◽  
Medical Science ◽  
Tumor Segmentation ◽  
Brain Tumor Segmentation ◽  
Non Invasive ◽  
Science Community

Image segmentation plays a crucial role in recognizing image signification for checking and mining medical image records. Brain tumor segmentation is a complicated assignment in medical image analysis. It is challenging to identify precisely and extract that a portion of the image has abnormal tissues for further diagnosis and analysis. The method of segmenting a tumor from a brain MRI image is a highly concentrated medical science community field, as MRI is non-invasive. In this survey, brain MRI images' latest brain tumor segmentation techniques are addressed a thoroughgoing literature review. Besides, surveys the several approved techniques regularly applied for brain tumor MRI segmentation. Also, highlighting variances among them and reviews their abilities, pros, and weaknesses. Various approaches to image segmentation are described and explicated with the modern participation of several investigators.

scholarly journals K-means algorithm with level set for brain tumor segmentation

2019 ◽  
Vol 15 (2) ◽  
pp. 991
Author(s):  
Samah Abdelaziz ◽  
Songfeng Lu
Keyword(s):  
Brain Tumor ◽  
Brain Tumors ◽  
Level Set ◽  
Medical Image ◽  
Brain Mri ◽  
Tumor Segmentation ◽  
Accurate Information ◽  
Resonance Imaging ◽  
Brain Tumor Segmentation ◽  
Magnetic Resonance Imaging Mri

<p>Brain is a complicated structure consisting of millions of millions cells so that, it’s difficult to identify any diseases without using any computerized technology. Magnetic resonance imaging (mri) is one of the main assessments of brain tumors. One of the most important steps on medical image processing is segmentation. Segmenting brain mri images, which provide accurate information for the diagnosis and therapy decisions of brain tumors. We proposed to segment brain tumor mri images into three parts (wm (white matter), gm (gray matter), and background). The first algorithm is for applying median filtering on brain mri image for removing the noise from the image for achieving accurate results. The second algorithm is for applying k-means algorithm for accuracy in time consuming and for clustering into regions and  the third algorithm indicate the detecting the boundary of the image with the use of level set. By comparison, our proposed method, its efficiency to segment perfectly more than other previous used algorithms especially on time consuming.</p>

scholarly journals A Review of Brain Tumor Image Segmentation of MR Images Using Deep Learning Methods

2021 ◽  
Author(s):  
Amishi Vijay ◽  
Jasleen Saini ◽  
B.S. Saini
Keyword(s):  
Deep Learning ◽  
Brain Tumor ◽  
Automatic Segmentation ◽  
Learning Algorithms ◽  
Region Of Interest ◽  
Tumor Segmentation ◽  
Dice Similarity Coefficient ◽  
Brain Tumor Segmentation ◽  
Learning Techniques ◽  
Sensitivity Specificity

A significant analysis is routine for Brain Tumor patients and it depends on accurate segmentation of Region of Interest. In automatic segmentation, field deep learning algorithms are attaining interest after they have performed very well in various ImageNet competitions. This review focuses on state-of-the-art Deep Learning Algorithms which are applied to Brain Tumor Segmentation. First, we review the methods of brain tumor segmentation, next the different deep learning algorithms and their performance measures like sensitivity, specificity and Dice similarity Coefficient (DSC) are discussed and Finally, we discuss and summarize the current deep learning techniques and identify future scope and trends.

Recent advancements in Fuzzy C-means based techniques for brain MRI Segmentation

2021 ◽  
Vol 16 ◽  
Author(s):  
Ghazanfar Latif ◽  
Jaafar Alghazo ◽  
Fadi N. Sibai ◽  
D.N.F. Awang Iskandar ◽  
Adil H. Khan
Keyword(s):  
Brain Tumor ◽  
Brain Tumors ◽  
Brain Mri ◽  
Tumor Segmentation ◽  
Brain Anatomy ◽  
Mri Segmentation ◽  
Brain Tumor Segmentation ◽  
Brain Images ◽  
Low Contrast ◽  
Fuzzy C Means

Background: Variations of image segmentation techniques, particularly those used for Brain MRI segmentation, vary in complexity from basic standard Fuzzy C-means (FCM) to more complex and enhanced FCM techniques. Objective: In this paper, a comprehensive review is presented on all thirteen variations of FCM segmentation techniques. In the review process, the concentration is on the use of FCM segmentation techniques for brain tumors. Brain tumor segmentation is a vital step in the process of automatically diagnosing brain tumors. Unlike segmentation of other types of images, brain tumor segmentation is a very challenging task due to the variations in brain anatomy. The low contrast of brain images further complicates this process. Early diagnosis of brain tumors is indeed beneficial to patients, doctors, and medical providers. Results: FCM segmentation works on images obtained from magnetic resonance imaging (MRI) scanners, requiring minor modifications to hospital operations to early diagnose tumors as most, if not all, hospitals rely on MRI machines for brain imaging. In this paper, we critically review and summarize FCM based techniques for brain MRI segmentation.

scholarly journals Versatile Framework for Medical Image Processing and Analysis with Application to Automatic Bone Age Assessment

2018 ◽  
Vol 2018 ◽  
pp. 1-13 ◽  
Author(s):  
Chen Zhao ◽  
Jungang Han ◽  
Yang Jia ◽  
Lianghui Fan ◽  
Fan Gou
Keyword(s):  
Image Processing ◽  
Deep Learning ◽  
Medical Image ◽  
Deep Neural Networks ◽  
Medical Image Processing ◽  
Bone Age ◽  
Age Assessment ◽  
Image Processing And Analysis ◽  
Learning Technique ◽  
Bone Age Assessment

Deep learning technique has made a tremendous impact on medical image processing and analysis. Typically, the procedure of medical image processing and analysis via deep learning technique includes image segmentation, image enhancement, and classification or regression. A challenge for supervised deep learning frequently mentioned is the lack of annotated training data. In this paper, we aim to address the problems of training transferred deep neural networks with limited amount of annotated data. We proposed a versatile framework for medical image processing and analysis via deep active learning technique. The framework includes (1) applying deep active learning approach to segment specific regions of interest (RoIs) from raw medical image by using annotated data as few as possible; (2) generative adversarial Network is employed to enhance contrast, sharpness, and brightness of segmented RoIs; (3) Paced Transfer Learning (PTL) strategy which means fine-tuning layers in deep neural networks from top to bottom step by step to perform medical image classification or regression tasks. In addition, in order to understand the necessity of deep-learning-based medical image processing tasks and provide clues for clinical usage, class active map (CAM) is employed in our framework to visualize the feature maps. To illustrate the effectiveness of the proposed framework, we apply our framework to the bone age assessment (BAA) task using RSNA dataset and achieve the state-of-the-art performance. Experimental results indicate that the proposed framework can be effectively applied to medical image analysis task.

Sign in / Sign up

Export Citation Format

Share Document