scholarly journals Genetic Identification and Diversity of Stocks of The African Bonytongue, Heterotis Niloticus (Osteoglossiformes: Arapaiminae), in Nigeria, West Africa

2021 ◽  
Author(s):  
Tofunmi E. Oladimeji ◽  
Isabel C. Caballero ◽  
Mariana Mateos ◽  
Michael O. Awodiran ◽  
Kirk O. Winemiller ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
West Africa ◽  
Habitat Degradation ◽  
Natural Populations ◽  
Central Africa ◽  
Genetic Identification ◽  
Inland Fisheries ◽  
Genetic Patterns ◽  
Genetic Stocks ◽  
Kainji Lake

Abstract Inland fisheries are an important source of protein and income for people in Africa, and sustainable fisheries management requires knowledge of regional stocks. Presently, information regarding genetic diversity of African freshwater fishes is very limited. Here we present findings from a spatial analysis of genetic patterns in the African bonytongue, Heterotis niloticus, an important component of inland fisheries in West Africa. The species is common throughout Western and Central Africa and the Nile Basin; and has been introduced for aquaculture in locations across Africa. Nigeria has the largest fishery for African bonytongues, representing ~86% of the global total. Recent declines in yields at some Nigerian locations, however, suggest current levels of exploitation may be unsustainable. Habitat degradation also may be impacting some stocks. Despite its commercial and nutritional importance, the African bonytongue has been the subject of scant research to support management. We examined patterns of genetic diversity in natural populations of H. niloticus at four locations in Nigeria, including Kainji Lake, a reservoir on the Niger River in north-central Nigeria, and three southtern localities (Ethiope River, Igbokoda River, and Epe Lagoon), as well fish from the Ouémé River delta near Porto Novo, Benin. Eighty-five specimens were genotyped for nine microsatellite-loci. Genetic diversity estimates were highest at Kainji Lake, and substantially lower at southern localities. High levels of genetic differentiation were detected between samples from Kainji Lake and those from the southern localities. Low, yet significant FST values were observed among samples from southern Nigerian localities that were more differentiated from the sample from nearby coastal Benin. We thus recommend that African bonytongues from the five locations be considered distinct genetic stocks and managed accordingly.

scholarly journals Population genetics of the freshwater fish Prochilodus magdalenae (Characiformes: Prochilodontidae), using species-specific microsatellite loci

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e10327
Author(s):  
Ricardo M. Landínez-García ◽  
Juan Carlos Narváez ◽  
Edna J. Márquez
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Freshwater Fish ◽  
Microsatellite Loci ◽  
Natural Populations ◽  
Genetic Stock ◽  
High Genetic Diversity ◽  
Genetic Diversity And Structure ◽  
Genetic Stocks ◽  
Species Specific

Prochilodus magdalenae is a freshwater fish endemic to the Colombian Magdalena-Cauca and Caribbean hydrographic basins. The genetic structure patterns of populations of different members of Prochilodus and the historic restocking of its depleted natural populations suggest that P. magdalenae exhibits genetic stocks that coexist and co-migrate throughout the rivers Magdalena, Cauca, Cesar, Sinú and Atrato. To test this hypothesis and explore the levels of genetic diversity and population demography of 725 samples of P. magdalenae from the studied rivers, we developed a set of 11 species-specific microsatellite loci using next-generation sequencing, bioinformatics, and experimental tests of the levels of diversity of the microsatellite loci. The results evidenced that P. magdalenae exhibits high genetic diversity, significant inbreeding coefficient ranging from 0.162 to 0.202, and signs of erosion of the genetic pool. Additionally, the population genetic structure constitutes a mixture of genetic stocks heterogeneously distributed along the studied rivers, and moreover, a highly divergent genetic stock was detected in Chucurí, Puerto Berrío and Palagua that may result from restocking practices. This study provides molecular tools and a wide framework regarding the genetic diversity and structure of P. magdalenae, which is crucial to complement its baseline information, diagnosis and monitoring of populations, and to support the implementation of adequate regulation, management, and conservation policies.

scholarly journals In vitro conservation and genetic diversity of threatened species of Melocactus (Cactaceae)

2021 ◽  
Author(s):  
Gabriela Torres-Silva ◽  
Alessandra Selbach Schnadelbach ◽  
Hédina Basile Bezerra ◽  
Alone Lima-Brito ◽  
Sheila Votória Resende
Keyword(s):  
Genetic Diversity ◽  
Habitat Degradation ◽  
Natural Habitat ◽  
Natural Populations ◽  
Shannon Index ◽  
Survival Percentage ◽  
Expected Heterozygosity ◽  
Osmotic Agent ◽  
Slow Growth Storage

Abstract The high endemism, the natural habitat degradation, and the over-collection for ornamental purposes have led some species such as Melocactus paucispinus and M. glaucescens to be threatened with extinction. The use of in vitro conservation techniques, such as slow growth storage, promotes the preservation of genetic diversity with integrity. The goal of this study was to establish a strategy for in vitro conservation of apical segments of the cladode of M. paucispinus and M. glaucescens and evaluate the genetic diversity of individuals from in vitro germinated plants. For such purpose, different concentrations of the plant regulator ancymidol and the osmotic agent sucrose on the inhibition of the in vitro growth were tested, and the genetic diversity of M. paucispinus and M. glaucescens individuals stored in vitro was evaluated. Sucrose showed higher efficiency in the reduction of growth than ancymidol for both species. However, due to the reduction in survival percentage, the use of sucrose over 75 g L− 1 in the in vitro conservation of both species for 360 days is not recommended. In the genetic diversity analysis, 76.92% of polymorphic loci (P), expected heterozygosity (He) = 0.276 and Shannon index (S) = 0.414 were observed for M. paucispinus. For M. glaucescens, the observed values were P = 95.38%, He = 0.228 and S = 0.369. These values observed here were higher than those previously found for the natural populations of these species, which demonstrated that this in vitro collection showed genetic diversity and can be used in management and reintroduction programs of these species.

Introduction

2018 ◽  
Author(s):  
Marina Sharpe
Keyword(s):  
West Africa ◽  
Great Lakes ◽  
East Africa ◽  
North Africa ◽  
Southern Africa ◽  
Theoretical Approach ◽  
Central Africa ◽  
Horn Of Africa ◽  
Refugee Protection

This introductory chapter begins by presenting the book’s structure in section A. Section B then delineates the book’s contours, outlining four aspects of refugee protection in Africa that are not addressed. Section C provides context, with a contemporary overview of the state of refugee protection in Africa. It also looks at the major aspects of the refugee situations in each of Africa’s principal geographic sub-regions: East Africa (including the Horn of Africa), Central Africa and the Great Lakes, West Africa, Southern Africa, and North Africa. Section D then concludes with an outline of the theoretical approach to regime relationships employed throughout the book.

scholarly journals Influence of environmental factors on the genetic variation of the aquatic macrophyte Ranunculus subrigidus on the Qinghai-Tibetan Plateau

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Zhigang Wu ◽  
Xinwei Xu ◽  
Juan Zhang ◽  
Gerhard Wiegleb ◽  
Hongwei Hou
Keyword(s):  
Genetic Diversity ◽  
Tibetan Plateau ◽  
Environmental Factors ◽  
Local Adaptation ◽  
Aquatic Macrophyte ◽  
Spatial Genetic Structure ◽  
Long Distance ◽  
Elevation Gradients ◽  
Mantel Tests ◽  
Genetic Patterns

Abstract Background Due to the environmental heterogeneity along elevation gradients, alpine ecosystems are ideal study objects for investigating how ecological variables shape the genetic patterns of natural species. The highest region in the world, the Qinghai-Tibetan Plateau, is a hotspot for the studies of evolutionary processes in plants. Many large rivers spring from the plateau, providing abundant habitats for aquatic and amphibious organisms. In the present study, we examined the genetic diversity of 13 Ranunculus subrigidus populations distributed throughout the plateau in order to elucidate the relative contribution of geographic distance and environmental dissimilarity to the spatial genetic pattern. Results A relatively low level of genetic diversity within populations was found. No spatial genetic structure was suggested by the analyses of molecular variance, Bayesian clustering analysis and Mantel tests. Partial Mantel tests and multiple matrix regression analysis showed a significant influence of the environment on the genetic divergence of the species. Both climatic and water quality variables contribute to the habitat heterogeneity of R. subrigidus populations. Conclusions Our results suggest that historical processes involving long-distance dispersal and local adaptation may account for the genetic patterns of R. subrigidus and current environmental factors play an important role in the genetic differentiation and local adaptation of aquatic plants in alpine landscapes.

scholarly journals Small population size and low genomic diversity have no effect on fitness in experimental translocations of a wild fish

2019 ◽  
Vol 286 (1916) ◽  
pp. 20191989 ◽  
Author(s):  
M. C. Yates ◽  
E. Bowles ◽  
D. J. Fraser
Keyword(s):  
Genetic Diversity ◽  
Body Size ◽  
Population Size ◽  
Brook Trout ◽  
Habitat Degradation ◽  
Species Conservation ◽  
Empirical Work ◽  
Genomic Diversity ◽  
Effective Population ◽  
Isolated Populations

Little empirical work in nature has quantified how wild populations with varying effective population sizes and genetic diversity perform when exposed to a gradient of ecologically important environmental conditions. To achieve this, juvenile brook trout from 12 isolated populations or closed metapopulations that differ substantially in population size and genetic diversity were transplanted to previously fishless ponds spanning a wide gradient of ecologically important variables. We evaluated the effect of genome-wide variation, effective population size ( N e ), pond habitat, and initial body size on two fitness correlates (survival and growth). Genetic variables had no effect on either fitness correlate, which was determined primarily by habitat (pond temperature, depth, and pH) and initial body size. These results suggest that some vertebrate populations with low genomic diversity, low N e , and long-term isolation can represent important sources of variation and are capable of maintaining fitness in, and ultimately persisting and adapting to, changing environments. Our results also reinforce the paramount importance of improving available habitat and slowing habitat degradation for species conservation.

scholarly journals Genetic diversity of macauba from natural populations of Brazil

2015 ◽  
Vol 8 (1) ◽  
Author(s):  
Léo Duc Haa Carson Schwartzhaupt da Conceição ◽  
Rosemar Antoniassi ◽  
Nilton Tadeu Vilela Junqueira ◽  
Marcelo Fideles Braga ◽  
Adelia Ferreira de Faria-Machado ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Natural Populations

scholarly journals State and evolution of the African rainforests between 1990 and 2010

2013 ◽  
Vol 368 (1625) ◽  
pp. 20120300 ◽  
Author(s):  
Philippe Mayaux ◽  
Jean-François Pekel ◽  
Baudouin Desclée ◽  
François Donnay ◽  
Andrea Lupi ◽  
...  
Keyword(s):  
West Africa ◽  
Forest Cover ◽  
Central Africa ◽  
Congo Basin ◽  
Landsat Images ◽  
Deforestation Rate ◽  
Rural And Urban ◽  
Moderate Resolution ◽  
Underlying Causes ◽  
Moderate Resolution Imaging Spectroradiometer

This paper presents a map of Africa's rainforests for 2005. Derived from moderate resolution imaging spectroradiometer data at a spatial resolution of 250 m and with an overall accuracy of 84%, this map provides new levels of spatial and thematic detail. The map is accompanied by measurements of deforestation between 1990, 2000 and 2010 for West Africa, Central Africa and Madagascar derived from a systematic sample of Landsat images—imagery from equivalent platforms is used to fill gaps in the Landsat record. Net deforestation is estimated at 0.28% yr −1 for the period 1990–2000 and 0.14% yr −1 for the period 2000–2010. West Africa and Madagascar exhibit a much higher deforestation rate than the Congo Basin, for example, three times higher for West Africa and nine times higher for Madagascar. Analysis of variance over the Congo Basin is then used to show that expanding agriculture and increasing fuelwood demands are key drivers of deforestation in the region, whereas well-controlled timber exploitation programmes have little or no direct influence on forest-cover reduction at present. Rural and urban population concentrations and fluxes are also identified as strong underlying causes of deforestation in this study.

Genetic diversity of fringed brome (Bromus ciliatus) as determined by amplified fragment length polymorphism

2005 ◽  
Vol 83 (10) ◽  
pp. 1322-1328 ◽  
Author(s):  
Yong-Bi Fu ◽  
Bruce E. Coulman ◽  
Yasas S.N. Ferdinandez ◽  
Jacques Cayouette ◽  
Paul M. Peterson
Keyword(s):  
Genetic Diversity ◽  
Length Polymorphism ◽  
Fragment Length ◽  
Habitat Restoration ◽  
Fragment Length Polymorphism ◽  
Natural Populations ◽  
Germplasm Conservation ◽  
Amplified Fragment Length Polymorphism ◽  
Large Area ◽  
Geographic Origins

Fringed brome ( Bromus ciliatus L.) is found in native stands throughout a large area of North America. Little is known about the genetic diversity of this species. The amplified fragment length polymorphism (AFLP) technique was applied to assess the genetic diversity of 16 fringed brome populations sampled in Canada from the provinces of Alberta, British Columbia, Quebec, and Saskatchewan. Four AFLP primer pairs were employed to screen 82 samples with four to six samples per population and 83 polymorphic AFLP bands scored for each sample. The frequencies of the scored bands in all assayed samples ranged from 0.01 to 0.99 and averaged 0.53. Analysis of molecular variance revealed that 52.6% of the total AFLP variation resided among the 16 populations and 20.6% among the four provinces. The five Quebec populations appeared to be genetically the most diverse and distinct. The AFLP variability observed was significantly associated with the geographic origins of the fringed brome populations. These findings are useful for sampling fringed brome germplasm from natural populations for germplasm conservation and should facilitate the development of genetically diverse regional cultivars for habitat restoration and revegetation.

Systematic revision of the living African Slender-snouted Crocodiles (Mecistops Gray, 1844)

Zootaxa ◽  
2018 ◽  
Vol 4504 (2) ◽  
pp. 151 ◽  
Author(s):  
MATTHEW H. SHIRLEY ◽  
AMANDA N. CARR ◽  
JENNIFER H. NESTLER ◽  
KENT A. VLIET ◽  
CHRISTOPHER A. BROCHU
Keyword(s):  
West Africa ◽  
Central Africa ◽  
West African ◽  
Valid Species ◽  
Morphological Evidence ◽  
Systematic Revision ◽  
Current State ◽  
History Of ◽  
Living Species ◽  
African Form

Molecular and morphological evidence has shown that the African slender-snouted, or sharp-nosed, crocodile Mecistops cataphractus (Cuvier, 1824) is comprised of two superficially cryptic species: one endemic to West Africa and the other endemic to Central Africa. Our ability to characterize the two species is compromised by the complicated taxonomic history of the lineage and overlapping ranges of variation in distinguishing morphological features. The name M. cataphractus was evidently originally based on West African material, but the holotype is now lost. Although types exist for other names based on the West African form, the name M. cataphractus is sufficiently entrenched in the literature, and other names sufficiently obscure, to justify retypification. Here, we designate a neotype for M. cataphractus and restrict it to West Africa. We resurrect M. leptorhynchus as a valid species from Central Africa and identify exemplary referred specimens that, collectively, overcome the obscurity and diagnostic limits of the extant holotype. We additionally indicate suitable neotype material in the event the holotype is lost, destroyed, or otherwise needing replacement, and we rectify the previously erroneous type locality designation. We provide a revised diagnosis for crown Mecistops, and revise and update previous descriptions of the two living species, including providing both more complete descriptions and discussion of diagnostic characters. Finally, we provide considerable discussion of the current state of knowledge of these species’ ecology, natural history, and distribution. 

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