scholarly journals Influence of environmental factors on the genetic variation of the aquatic macrophyte Ranunculus subrigidus on the Qinghai-Tibetan Plateau

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Zhigang Wu ◽  
Xinwei Xu ◽  
Juan Zhang ◽  
Gerhard Wiegleb ◽  
Hongwei Hou
Keyword(s):  
Genetic Diversity ◽  
Tibetan Plateau ◽  
Environmental Factors ◽  
Local Adaptation ◽  
Aquatic Macrophyte ◽  
Spatial Genetic Structure ◽  
Long Distance ◽  
Elevation Gradients ◽  
Mantel Tests ◽  
Genetic Patterns

Abstract Background Due to the environmental heterogeneity along elevation gradients, alpine ecosystems are ideal study objects for investigating how ecological variables shape the genetic patterns of natural species. The highest region in the world, the Qinghai-Tibetan Plateau, is a hotspot for the studies of evolutionary processes in plants. Many large rivers spring from the plateau, providing abundant habitats for aquatic and amphibious organisms. In the present study, we examined the genetic diversity of 13 Ranunculus subrigidus populations distributed throughout the plateau in order to elucidate the relative contribution of geographic distance and environmental dissimilarity to the spatial genetic pattern. Results A relatively low level of genetic diversity within populations was found. No spatial genetic structure was suggested by the analyses of molecular variance, Bayesian clustering analysis and Mantel tests. Partial Mantel tests and multiple matrix regression analysis showed a significant influence of the environment on the genetic divergence of the species. Both climatic and water quality variables contribute to the habitat heterogeneity of R. subrigidus populations. Conclusions Our results suggest that historical processes involving long-distance dispersal and local adaptation may account for the genetic patterns of R. subrigidus and current environmental factors play an important role in the genetic differentiation and local adaptation of aquatic plants in alpine landscapes.

scholarly journals Global gene flow releases invasive plants from environmental constraints on genetic diversity

2020 ◽  
Vol 117 (8) ◽  
pp. 4218-4227 ◽  
Author(s):  
Annabel L. Smith ◽  
Trevor R. Hodkinson ◽  
Jesus Villellas ◽  
Jane A. Catford ◽  
Anna Mária Csergő ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Invasive Plants ◽  
Spatial Genetic Structure ◽  
Plantago Lanceolata ◽  
Research Network ◽  
Environmental Constraints ◽  
Long Distance ◽  
Precipitation Seasonality ◽  
The Impact

When plants establish outside their native range, their ability to adapt to the new environment is influenced by both demography and dispersal. However, the relative importance of these two factors is poorly understood. To quantify the influence of demography and dispersal on patterns of genetic diversity underlying adaptation, we used data from a globally distributed demographic research network comprising 35 native and 18 nonnative populations of Plantago lanceolata. Species-specific simulation experiments showed that dispersal would dilute demographic influences on genetic diversity at local scales. Populations in the native European range had strong spatial genetic structure associated with geographic distance and precipitation seasonality. In contrast, nonnative populations had weaker spatial genetic structure that was not associated with environmental gradients but with higher within-population genetic diversity. Our findings show that dispersal caused by repeated, long-distance, human-mediated introductions has allowed invasive plant populations to overcome environmental constraints on genetic diversity, even without strong demographic changes. The impact of invasive plants may, therefore, increase with repeated introductions, highlighting the need to constrain future introductions of species even if they already exist in an area.

scholarly journals Patterns of Fine-Scale Spatial Genetic Structure and Pollen Dispersal in Giant Sequoia (Sequoiadendron giganteum)

Forests ◽  
2021 ◽  
Vol 12 (1) ◽  
pp. 61
Author(s):  
Rainbow DeSilva ◽  
Richard S. Dodd
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Spatial Genetic Structure ◽  
Spatial Scales ◽  
Pollen Dispersal ◽  
Detailed Examination ◽  
Background Information ◽  
Long Distance ◽  
Giant Sequoia ◽  
Sequoiadendron Giganteum

Research Highlights: Patterns of dispersal shape the distribution and temporal development of genetic diversity both within and among populations. In an era of unprecedented environmental change, the maintenance of extant genetic diversity is crucial to population persistence. Background and Objectives: We investigate patterns of pollen dispersal and spatial genetic structure within populations of giant sequoia (Sequoiadendron giganteum). Materials and Methods: The leaf genotypes of established trees from twelve populations were used to estimate the extent of spatial genetic structure within populations, as measured by the Sp statistic. We utilized progeny arrays from five populations to estimate mating parameters, the diversity of the pollen pool, and characteristics of pollen dispersal. Results: Our research indicates that giant sequoia is predominantly outcrossing, but exhibits moderate levels of bi-parental inbreeding (0.155). The diversity of the pollen pool is low, with an average of 7.5 pollen donors per mother tree. As revealed by the Sp-statistic, we find significant genetic structure in ten of twelve populations examined, which indicates the clustering of related individuals at fine spatial scales. Estimates of pollen and gene dispersal indicate predominantly local dispersal, with the majority of pollen dispersal <253 m, and with some populations showing fat-tailed dispersal curves, suggesting potential for long-distance dispersal. Conclusions: The research presented here represent the first detailed examination of the reproductive ecology of giant sequoia, which will provide necessary background information for the conservation of genetic resources in this species. We suggest that restoration planting can mitigate potential diversity loss from many giant sequoia populations.

scholarly journals Diversity And Distribution Of CO2-Fixing Microbial Community Along Elevation Gradients In Meadow Soils On The Tibetan Plateau

2021 ◽  
Author(s):  
Haiyan Feng ◽  
Zhe Wang ◽  
Pengli Jia ◽  
Jingping Gai ◽  
Baodong Chen ◽  
...  
Keyword(s):  
Microbial Community ◽  
Tibetan Plateau ◽  
Environmental Factors ◽  
Carbon Cycling ◽  
Elevation Gradient ◽  
Microbial Community Composition ◽  
Vegetation Coverage ◽  
The Tibetan Plateau ◽  
Elevation Gradients ◽  
Bisphosphate Carboxylase

Abstract Soil CO2-fixing microbes play a significant role in CO2-fixation in the terrestrial ecosystems, particularly in the Tibetan Plateau. To understand carbon sequestration by soil CO2-fixing microbes and the carbon cycling in alpine meadow soils, microbial diversity and their driving environmental factors were explored along an elevation gradient from 3900m to 5100m, on both east and west slopes of Mila Mountain region on the Tibetan Plateau. The CO2-fixing microbial communities were characterized by high-throughput sequencing targeting the cbbL gene，encoding the large subunit for the CO2-fixing protein ribulose 1, 5-bisphosphate carboxylase/oxygenase. The overall OTU abundance is concentrated at an altitude between 4300m~4900m. The species richness and distribution uniformity on the east slope is better than those on the west slope. In terms of microbial community composition, Proteobacteria is dominant, and the most abundant genera are Cupriavidus, Rhodobacter, Sulfurifustis and Thiobacillus. The CO2-fixing microbial community structure dramatically shifted along the elevation. It was jointly driven by vegetation coverage, soil moisture content, and soil organic carbon and soil particle size, and most environmental factors are positively correlated. Our results are helpful to understand the variation in soil microbial community and its role in soil carbon cycling along elevation gradients.

Genetic impacts of habitat loss on the rare Banded Ironstone Formation endemic Ricinocarpos brevis (Euphorbiaceae)

2019 ◽  
Vol 67 (3) ◽  
pp. 183 ◽  
Author(s):  
Siegfried L. Krauss ◽  
Janet Anthony
Keyword(s):  
Genetic Diversity ◽  
Genetic Differentiation ◽  
Isolation By Distance ◽  
Spatial Genetic Structure ◽  
Geographic Distance ◽  
Mining Operations ◽  
Analysis Of Molecular Variance ◽  
Mantel Tests ◽  
Tests Of Association ◽  
Potential Impact

Ricinocarpos brevis (Euphorbiaceae) is a declared rare species currently known from only three Banded Ironstone Formation (BIF) ranges (Perrinvale, Johnston and Windarling Ranges) in the Yilgarn region of Western Australia. The present study assessed the potential impact of proposed mining on genetic diversity within R. brevis. Approximately 30 plants were sampled from each of 14 sites across the known distribution of R. brevis. Genetic variation and its spatial structure was assessed with 144 polymorphic AFLP markers that were generated by two independent primer pairs: M-CTG/P-AC (81 markers) and M-CTA/P-AC (63 markers). Hierarchical spatial genetic structure was assessed by an analysis of molecular variance (AMOVA), Mantel tests of association between genetic- and geographic-distance and ordination. Specific attention was given to the extent of genetic differentiation of the three populations on the Windarling Range W4 deposit, which was proposed for mining operations. Strong genetic differentiation (ΦPT=0.186–0.298) among the three ranges was found. Genetic differentiation of the Johnston Range populations from Windarling and Perrinvale was greater than expected under isolation by distance predictions, suggesting adaptive genetic differentiation driven by site environmental differences, reflected by differences in plant community, substrate and landscape features. In contrast, genetic differentiation among the three Windarling Range regions (W2, W3, W4) was weaker (ΦPT=0.055–0.096). Mean pairwise ΦPT=0.078 for the 10 Windarling sites, which was unchanged with the removal of the W4 populations. In addition, none of the markers scored were unique to the W4 populations. Thus, for this set of markers, the removal of plants on the Windarling Range W4 deposit had little impact on genetic diversity within R. brevis. Strong concordance in results from the independent datasets generated by the two AFLP primer pairs provides overall support for the conclusions drawn.

scholarly journals Ancient events and climate adaptive capacity shaped distinct chloroplast genetic structure in the oak lineages

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Mengxiao Yan ◽  
Ruibin Liu ◽  
Ying Li ◽  
Andrew L. Hipp ◽  
Min Deng ◽  
...  
Keyword(s):  
Climate Change ◽  
Genetic Diversity ◽  
Genetic Structure ◽  
Environmental Changes ◽  
Spatial Genetic Structure ◽  
Future Climate ◽  
Future Climate Change ◽  
Wide Range ◽  
Genetic Patterns ◽  
Genetic Structures

Abstract Background Understanding the origin of genetic variation is the key to predict how species will respond to future climate change. The genus Quercus is a species-rich and ecologically diverse woody genus that dominates a wide range of forests and woodland communities of the Northern Hemisphere. Quercus thus offers a unique opportunity to investigate how adaptation to environmental changes has shaped the spatial genetic structure of closely related lineages. Furthermore, Quercus provides a deep insight into how tree species will respond to future climate change. This study investigated whether closely related Quercus lineages have similar spatial genetic structures and moreover, what roles have their geographic distribution, ecological tolerance, and historical environmental changes played in the similar or distinct genetic structures. Results Despite their close relationships, the three main oak lineages (Quercus sections Cyclobalanopsis, Ilex, and Quercus) have different spatial genetic patterns and occupy different climatic niches. The lowest level and most homogeneous pattern of genetic diversity was found in section Cyclobalanopsis, which is restricted to warm and humid climates. The highest genetic diversity and strongest geographic genetic structure were found in section Ilex, which is due to their long-term isolation and strong local adaptation. The widespread section Quercus is distributed across the most heterogeneous range of environments; however, it exhibited moderate haplotype diversity. This is likely due to regional extinction during Quaternary climatic fluctuation in Europe and North America. Conclusions Genetic variations of sections Ilex and Quercus were significantly predicted by geographic and climate variations, while those of section Cyclobalanopsis were poorly predictable by geographic or climatic diversity. Apart from the different historical environmental changes experienced by different sections, variation of their ecological or climatic tolerances and physiological traits induced varying responses to similar environment changes, resulting in distinct spatial genetic patterns.

scholarly journals Genetic melting pot and importance of long-distance dispersal indicated in the Gladiolus imbricatus L. populations in the Polish Carpathians

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Agnieszka Sutkowska ◽  
Józef Mitka ◽  
Tomasz Warzecha ◽  
Jakub Bunk ◽  
Julia Rutkowska ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Diversity Indices ◽  
Western Carpathians ◽  
Genetic Structuring ◽  
Long Distance ◽  
Plant Populations ◽  
Genetic Stock ◽  
Melting Pot ◽  
Mountain Ranges ◽  
Eastern Carpathians

AbstractThe genetic diversity in 11 populations of Gladiolus imbricatus in five mountain ranges, including the Tatra, Pieniny, Gorce, Beskid Niski (Western Carpathians) and Bieszczady Mts (Eastern Carpathians), was studied with inter-simple sequence repeat (ISSR) markers. The species is a perennial plant occurring in open and semi-open sites of anthropogenic origin (meadows and forest margins). We checked a hypothesis on the microrefugial character of the plant populations in the Pieniny Mts, a small calcareous Carpathian range of complicated relief that has never been glaciated. Plant populations in the Tatra and Pieniny Mts had the highest genetic diversity indices, pointing to their long-term persistence. The refugial vs. the non-refugial mountain ranges accounted for a relatively high value of total genetic variation [analysis of molecular variance (AMOVA), 14.12%, p = 0.003]. One of the Pieniny populations was of hybridogenous origin and shared genetic stock with the Tatra population, indicating there is a local genetic melting pot. A weak genetic structuring of populations among particular regions was found (AMOVA, 4.5%, p > 0.05). This could be an effect of the frequent short-distance and sporadic long-distance gene flow. The dispersal of diaspores between the remote populations in the Western Carpathians and Eastern Carpathians could be affected by the historical transportation of flocks of sheep from the Tatra to Bieszczady Mts.

scholarly journals Genetic and Epigenetic Changes during the Upward Expansion of Deyeuxia angustifolia Kom. in the Alpine Tundra of the Changbai Mountains, China

Plants ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 291
Author(s):  
Biao Ni ◽  
Jian You ◽  
Jiangnan Li ◽  
Yingda Du ◽  
Wei Zhao ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Dna Methylation ◽  
Genetic Variation ◽  
Soil Properties ◽  
Changbai Mountains ◽  
Epigenetic Variation ◽  
Geographical Distance ◽  
Mantel Tests ◽  
Epigenetic Diversity ◽  
Different Populations

Ecological adaptation plays an important role in the process of plant expansion, and genetics and epigenetics are important in the process of plant adaptation. In this study, genetic and epigenetic analyses and soil properties were performed on D. angustifolia of 17 populations, which were selected in the tundra zone on the western slope of the Changbai Mountains. Our results showed that the levels of genetic and epigenetic diversity of D. angustifolia were relatively low, and the main variation occurred among different populations (amplified fragment length polymorphism (AFLP): 95%, methylation sensitive amplification polymorphism (MSAP): 87%). In addition, DNA methylation levels varied from 23.36% to 35.70%. Principal component analysis (PCA) results showed that soil properties of different populations were heterogeneous. Correlation analyses showed that soil moisture, pH and total nitrogen were significantly correlated with genetic diversity of D. angustifolia, and soil temperature and pH were closely related to epigenetic diversity. Simple Mantel tests and partial Mantel tests showed that genetic variation significantly correlated with habitat or geographical distance. However, the correlation between epigenetic variation and habitat or geographical distance was not significant. Our results showed that, in the case of low genetic variation and genetic diversity, epigenetic variation and DNA methylation may provide a basis for the adaptation of D. angustifolia.

scholarly journals Multi-Year NDVI Values as Indicator of the Relationship between Spatiotemporal Vegetation Dynamics and Environmental Factors in the Qaidam Basin, China

2021 ◽  
Vol 13 (7) ◽  
pp. 1240
Author(s):  
Junpeng Lou ◽  
Guoyin Xu ◽  
Zhongjing Wang ◽  
Zhigang Yang ◽  
Sanchuan Ni
Keyword(s):  
Environmental Factors ◽  
Vegetation Dynamics ◽  
Vegetation Index ◽  
Qaidam Basin ◽  
Elevation Gradient ◽  
Practical Significance ◽  
Elevation Gradients ◽  
Relative Contribution ◽  
Significant Difference ◽  
Different Altitudes

The Qaidam Basin is a unique and complex ecosystem, wherein elevation gradients lead to high spatial heterogeneity in vegetation dynamics and responses to environmental factors. Based on the remote sensing data of Moderate Resolution Imaging Spectroradiometer (MODIS), Tropical Rainfall Measuring Mission (TRMM) and Global Land Data Assimilation System (GLDAS), we analyzed the spatiotemporal variations of vegetation dynamics and responses to precipitation, accumulative temperature (AT) and soil moisture (SM) in the Qaidam Basin from 2001 to 2016. Moreover, the contribution of those factors to vegetation dynamics at different altitudes was analyzed via an artificial neural network (ANN) model. The results indicated that the Normalized Difference Vegetation Index (NDVI) values in the growing season showed an overall upward trend, with an increased rate of 0.001/year. The values of NDVI in low-altitude areas were higher than that in high-altitude areas, and the peak values of NDVI appeared along the elevation gradient at 4400–4600 m. Thanks to the use of ANN, we were able to detect the relative contribution of various environmental factors; the relative contribution rate of AT to the NDVI dynamic was the most significant (35.17%) in the low-elevation region (< 2900 m). In the mid-elevation area (2900–3900 m), precipitation contributed 44.76% of the NDVI dynamics. When the altitude was higher than 3900 m, the relative contribution rates of AT (39.50%) and SM (38.53%) had no significant difference but were significantly higher than that of precipitation (21.97%). The results highlight that the different environmental factors have various contributions to vegetation dynamics at different altitudes, which has important theoretical and practical significance for regulating ecological processes.

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