scholarly journals Isolation and molecular identification of fungi that cause stem rot disease in Bali's local legumes

2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Ni Made Susun Parwanayoni ◽  
Dewa Ngurah Suprapta ◽  
Nyoman Darsini ◽  
Sang Ketut Sudirga

Efforts to improve food security in Indonesia, especially in Bali, need to be supported by improvements in cultivation techniques, including the management of pests and diseases. Legume crops are often attacked by stem rot diseases which can cause decreased production and economic losses. This disease is generally caused by the soil-borne pathogenic fungus Sclerotium rolfsii or Athelia rolfsii. The macroscopic and microscopic morphologies of the two species of the fungus Sclerotium rolfsii and Athelia rolfsii are the same and difficult to distinguish, so molecular identification is needed to determine the species. The research aims to isolate and molecularly identify fungi that cause stem rot disease in local legume plants in Bali. Research methods include isolation of pathogenic fungi from legumes showing symptoms of stem rot disease in Bali, pathogenicity test, identification of the highest levels of virulent isolates, DNA extraction, DNA amplification by PCR, and electrophoresis, ITS region sequencing, and computer analysis sequences DNA. The results of isolation pathogens that cause stem rot disease in Bali's local legume plants obtained six fungal isolates coded SKT, SKB1, SKB2 SKB3, SKL and SKN isolates. SKT isolates had the highest virulence rate after the pathogenicity test of peanut plants. Molecular identification results show that SKT  isolate is Athelia rolfsii, because it's in a clade with Athelia rolfsii fungi sequences in GenBank with 100% Bootstrap support.

2021 ◽  
Vol 21 (no 1) ◽  
Author(s):  
A. Praveen ◽  
C. Kannan

Groundnut or peanut (Arachis hypogea L.) is an important oilseed and edible crops of the world. It is affected by many diseases, among which stem rot disease caused by Sclerotium rolfsii is major fungal disease that cause severe yield losses up to 80%. An experiment wasconducted in Tamil Nadu during 2019-2020, to study the cultural, morphological and pathogenicity of different isolates of S. rolfsii infecting groundnut in major cultivating areas of Tamil Nadu. The overall disease severity ranges from 9.82 to 36.83 percent. The highest disease incidence 36.83 per cent was noticed in the Kalpadai village and the least incidence 9.82 per cent was recorded in Pattukotttai village. All the isolates varied their ability to produce abundant mycelium and sclerotial production. The pathogenicity test was conducted to all the twenty isolates and the isolate Sr6 exhibited the maximum disease incidence and proved to be more virulent.


2021 ◽  
Vol 17 (1) ◽  
pp. 35
Author(s):  
Wartono Wartono

<p>Chili (Capsicum annuum L.) is a vegetable commodity with high economic value which is widely cultivated by farmers in Indonesia. One of the obstacles faced in chili cultivation is stem rot disease. This study aimed to identify the pathogens that caused stem rot in chili plants obtained from one location in Sindangjaya Village, Cipanas District, Cianjur Regency, West Java Province based on morphological and molecular analyses. Pathogen identification was performed with morphological and molecular approaches. The morphological characters observed included colony shape, sporangium diameter, and mating type. The pathogenicity of the isolates was assayed by inoculating chili stems aged 40 days. Molecular identification was carried out using two pairs of primers for ITS regions and TEF-1 gene. Based on the results of morphological and molecular identification, as well as pathogenicity tests, it was confirmed that Phytophthora capsici pathogen was the causal agent of stem rot in chili plants collected from Sindangjaya Village. Further study is needed to determine the spread of the disease, damage, and yield loss caused by stem rot disease, as well as how to prevent and control the disease.</p>


2016 ◽  
Vol 82 (2) ◽  
pp. 96-104 ◽  
Author(s):  
Simi Jacob ◽  
Ramgopal Rao Sajjalaguddam ◽  
K. Vijay Krishna Kumar ◽  
Rajeev Varshney ◽  
Hari Kishan Sudini

2021 ◽  
pp. 174-196
Author(s):  
Shou-Hua Wang

Abstract This chapter provides information on diagnosis of stem diseases, including disease symptoms, visual and microscopic examination, isolation and colony observation, DNA-based identification, and pathogenicity test. Stem disease management are also discussed. Hemp diseases including hemp southern blight (Athelia rolfsii), hemp charcoal rot (Macrophomina phaseolina), hemp stem canker, stem rot and crown rot (Fusarium), hemp crown rot (Pythium) among others were used as models.


Plant Disease ◽  
2002 ◽  
Vol 86 (11) ◽  
pp. 1211-1218 ◽  
Author(s):  
G. T. Browne ◽  
W. R. DeTar ◽  
B. L. Sanden ◽  
C. J. Phene

Drip and sprinkler systems were compared for effectiveness as preplant metam sodium chemigation systems and conduciveness to late-season development of stem rot disease on potato. Sclerotia of Sclerotium rolfsii were used in a bioassay to test efficacy of metam sodium treatments. Drip application of metam sodium (532 liters/ha, 32.8% a.i.) through lines at 7 cm of depth in preformed beds (depths from bed top unless stated otherwise) killed all test sclerotia at 15-, 30-, or 46-cm depths. Drip application of the metam sodium through drip lines at 41 or 46 cm of depth resulted in 0 to 17 or 68 to 80% survival, respectively, of test sclerotia at 15 cm of depth; but all the sclerotia at 30 or 46 cm of depth were killed. Compared with the drip applications, sprinkler chemigation with metam sodium generally treated beds less effectively (8 to 100% of sclerotia survived at 15 cm, 62 to 100% at 30 or 46 cm). On flat ground, drip and sprinkler chemigation (metam sodium, 560 liters/ha) performed equally (4, 37, and 77% survival at 15-, 45-, and 75-cm depths, respectively). After potato planting and artificial soil infestation with S. rolfsii (5 to 6 weeks before harvest), subsurface drip-irrigated plots (line depth of 41 or 46 cm) had lower incidence of stem rot disease at harvest (13 to 23% on tubers) than that in sprinkler plots (56 to 62%). The low incidence of disease was associated with relatively dry surface soil. Subsurface drip chemigation with metam sodium in preformed plant beds does not consistently eradicate S. rolfsii sclerotia near the upper bed surface but, in an arid climate, it is less conducive than sprinkler irrigation to development of stem rot disease of potato.


2019 ◽  
Vol 15 (2) ◽  
pp. 53-58
Author(s):  
Antok Wahyu Sektiono ◽  
Syamsuddin Djauhari ◽  
Putri Devinta Pertiwi

Sclerotium rolfsii, a the Causal Agent of Stem Rot Disease on Hippeastrum sp.Symptoms of stem rot that cause Hippeastrum sp. or red lily wither, leaves turn yellow, and eventually die found at Mangliawan Village, District of Pakis, Malang - East Java. The purpose of this study was to identify the pathogens that cause root rot disease on lily plants and find out their host range. Sclerotium from the symptomatic base of the plant was isolated on potato dextrose agar medium. Fungus was identified based on the morphological characteristics of the colonies and mycelium. Host range test of pathogen was carried out by manual inoculation on Rain lily (Zephyranthes) St. Bernard's lily (Chlorophytum) and Beach Spider lily (Hymenocallis). The results of the identification showed that the fungus had white mycelium and formed sclerotium. Sclerotium is irregularly rounded, white when young, and dark brown when ripe, and forms 10 days after incubation. In hyphae, there are branching, septa, and clam connections. Based on the morphological characteristics of the disease the fungus was identified as Sclerotium rolfsii. In the host range test, the fungus was able to infect rain lilies and paris lilies, but not in spider lilies. This is the first report of S. rolfsii infection in lily in Indonesia.


Plant Disease ◽  
2011 ◽  
Vol 95 (12) ◽  
pp. 1585-1585
Author(s):  
J.-H. Kwon ◽  
Y. H. Lee ◽  
H.-S. Shim ◽  
J. Kim

Carrot (Daucus carota var. sativa DC.), an important root vegetable, is cultivated widely because of its dietary fiber and beta carotene. In June 2009 and June 2010, a disease suspected as root rot of carrot caused by Sclerotium rolfsii occurred in a 5-ha field in Jinju, Korea. Early symptoms consisted of water-soaked lesions on root and lower stem tissue near the soil line. Infected plants gradually withered and white mycelial mats appeared on the surface of roots. Numerous sclerotia were often produced on stem and root surfaces in contact with the soil. The heavily infected carrots became rotted and blighted and the whole plant eventually died. The freshly isolated pathogenic fungus was grown on potato dextrose agar (PDA) and examined microscopically. Optimum temperature for mycelia growth or sclerotia formation was 25 to 30°C. Numerous globoid sclerotia formed on the PDA after 18 days of mycelial growth. The sclerotia (1 to 3 mm in diameter) were white at first and then gradually turned dark brown. Aerial mycelia usually formed, consisting of many narrow hyphal strands 3 to 9 μm wide. The white mycelium formed a typical clamp connection after 5 days of growth at optimum temperature. To fulfill Koch's postulates, 10 carrot seedlings were inoculated with colonized agar discs (6 mm in diameter) of the causal fungus directly on the root and incubated in a humid chamber at 25°C for 24 h. Ten carrot seedlings were inoculated similarly with agar discs as the control treatment. After this period, the inoculated and noninoculated plants were maintained in a greenhouse. Eight days after inoculation, the disease symptoms seen in the field were reproduced and the fungus was reisolated from the artificially inoculated plants. To confirm identity of the causal fungus, the complete internal transcribed spacer (ITS) rDNA region of the causal fungus was amplified using the primers ITS1 and ITS4 (2) and sequenced. The resulting sequence of 684 bp was deposited in GenBank (Accession No. JF342557). The sequence was 99% similar to sequences of Athelia rolfsii (Sclerotium rolfsii) in GenBank. Cultures of S. rolfsii have been deposited with the Korean Agricultural Culture Collection (KACC 45154), National Academy of Agricultural Science, Korea. On the basis of symptoms, fungal colonies, the ITS sequence, and the pathogenicity test on the host plant, this fungus was identified as S. rolfsii Saccardo (1). To our knowledge, this is the first report of root rot of carrot caused by S. rolfsii in Korea. This disease is highly dependent upon environmental conditions, including warm weather and high humidity. Recent occurrence of the disease suggests that S. rolfsii could spread widely. References: (1) J. E. M. Mordue. CMI Descriptions of Pathogenic Fungi and Bacteria. No. 410, 1974. (2) T. J. White et al. Page 315 in: PCR Protocols: A Guide to Methods and Applications. M. A. Innis et al., eds. Academic Press, Inc., New York, 1990.


Plant Disease ◽  
2021 ◽  
Author(s):  
Jiang Ni ◽  
B. R. Lin ◽  
Lisha Song ◽  
Guiyu Tan ◽  
Jiang zhan Zhang ◽  
...  

Sarcandra glabra is an important Chinese medicinal plant, which was widely cultivated under forest in south China. Guangxi province is the main producing areas of this herb. In June 2019, a serious leaf disease was found causing severe defoliation in the S. glabra plantation under bamboo forest in Rongan country, Guangxi province (109°13′N′′E). About 70% of the plants in the plantation (300 ha) showed the similar symptoms. Initially, circular lesions appeared on young leaves as black spots (about 1 to 2 mm). Then, the spots gradually enlarged usually with an obvious yellowish margin (6 to 8 mm). Finally, the lesions coalesced and formed irregular, black, and large necrotic areas, resulting in the leaf abscission. For pathogen isolation, small pieces of tissue (5×5 mm) taken from 25 diseased leaves were sterilized with 75% ethanol for 30 s, subsequently, soaked in 0.1% HgCl2 for 2 min, rinsed three times in sterile distilled water, dried, and then placed aseptically onto the potato dextrose agar (PDA) plates, and incubated at 28 °C (12 h/12 h light/dark). Three days later, the isolates were placed on a new PDA plate for subsequent purification and sporulation. 20 pure fungal isolates were obtained from single spores. Of which, 15 isolates showed similar morphological characteristics.The colonies on PDA were round, dense, gray edge and dark gray in center area. Conidia in culture were appeared light brown, cylindrical in shape, with 0 to 8 septa, and 55 to 165 μm × 5.2 to 13.5 μm in size (mean = 106.2 μm × 8.6 μm, n = 30). These morphological characteristics resemble those of Corynespora sp. (Berk. & M.A. Curtis) C.T. Wei (Ellis et al. 1971). A single-spore isolate (ZD5) was selected from the 15 fungal isolates for a subsequent molecular identification. The genes of internal transcribed spacer (ITS) of ribosomal DNA, β-tublin, and actin were amplified with the primer pairs ITS-1/ITS-4 (White et al. 1990), β-tubulin 2-Bt2a/Bt2b (Glass and Donaldson 1995), ACT-512F/ACT-783R (Carbone and Kohn 1999), respectively. And the ITS, β-tublin, and actin sequences were deposited in the GenBank database with the accession numbers MW362446, MW367029, and MW533122. Blast analysis and neighbor-joining analysis based on ITS, β-tublin, and actin sequences using MEGA 6 revealed that the isolate was placed in the same clade as C. cassicola with 100% bootstrap support. Pathogenicity test was performed on the two-year-old potted S. glabra. Six-mm-diameter mycelial plugs were attached to the healthy leaves of S. glabra for co-culture, while the control group was attached with PDA. All plants were covered with plastic bags for 2 days in order to maintain high humidity and cultured in a greenhouse at 28 °C with a 12-h/12-h light/dark cycle. The symptoms appeared 2 days after co-culture were identical to those observed in the field. The same fungus was re-isolated from the lesions, and further morphological characterization and molecular assays, as described above.The control leaves remained symptomless during the pathogenicity tests. According to the previous literatures, C. cassicola is a plant pathogenic fungus with a broad host range, which can damage diverse tropical plants including Salvia miltiorrhiza (Lu et al. 2019), Solanum americanum (Wagner and Louise 2019), Vitex rotundifolia (Yeh and Kirschner 2017), Cucumis sativus, Lycopersicon esculentum (Hsu et al. 2002), Carica papaya (Tsai et al. 2015),and so on. To our knowledge, this is the first report of C. cassicola causing leaf spot on S. glabra in China.


Sign in / Sign up

Export Citation Format

Share Document