scholarly journals Evidencias moleculares de hibridación entre Serinus canaria domestica (L., 1758) y Spinus barbatus (Molina, 1782) (Aves: Fringillidae)

Author(s):  
Leila Díaz ◽  
Víctor Alejandro Correa ◽  
José J. Nuñez

Resumen En este estudio se muestran evidencias moleculares de éxito en la hibridación entre Serinus canaria domestica (linnaeus, 1758) y Spinus barbatus (molina, 1782). Como parte de una secuencia de retrocruzamiento, se logró reproducir híbridos F2 a partir de hembras híbridas fértiles viables F1 x S. c. domestica. La F1 fue la descendencia entre P0 = Serinus c. domestica x Spinus barbatus. Las secuencias de nucleótidos de dos segmentos de ADN, citocromo b mitocondrial (Cyt b) y el receptor de tirosina quinasa muscular (MuSK) del ADN nuclear se obtuvieron de tres especímenes híbridos F2. Tanto las secuencias de Cyt b como de MuSK señalaron fuerte soporte filogenético a la condición genética híbrida de los tres embriones F2. De esta manera la evidencia molecular refleja el éxito en el cruce interespecífico entre S. barbatus con S. c. domestica y que es posible obtener híbridos fértiles viables F1 (en este caso hembras) y F2 entre estos dos linajes en poblaciones naturales. Abstract In this study we show molecular evidences of success in hybridization between Serinus canaria domestica and Spinus barbatus. As part of a sequence of backcrossing we have achieved to reproduce F2 hybrids of fertile hybrid females F1 with parental S. c. domestica. F1 was the offspring between, P0 = S. c. domestica x S. barbatus. In this study the space where the observations and the breeding success are carried out between these species, they are described: is a room with the following measures; 4,45 m (lenghty) x 1,60 m (width) x 2,30 m (high), located in an urban building; specifically, glassed-balcony at a height of 10,60 m above ground level, facing some ornamental and exuberant canopy trees of Platanus orientalis (L., 1753) and with direct entrance of natural sunlight, in urban city of Santiago, Chile, where his perceptual world develops. We took care to keep the biotic and abiotic factors under control; specifically, incoming natural light, ambient vegetation and temperature. On the other hand, we fed the individuals appropriately and provided them with plenty of clean water to drink and get clean, where there were no predators. In sum, the individuals were kept in a healthy environment. The backcrossing between the male S. c. domestica (generation 0) bred with two viable hybrid F1 offspring females, it gave as resulted in a total of three independent generations of F2 hybrids (n = 12). All the individuals came out healthy, and none of them died, despite being inbred lineages. Three embryos representative of the F2 hybrids were sacrificed and deposited in 99% alcohol. Nucleotide sequences of two DNA segments, mitochondrial cytochrome b (Cyt b) and muscle-specific receptor tyrosine kinase (MuSK) gene of the nuclear DNA were obtained from three F2 hybrid specimens. The model of molecular evolution with the greatest adjustment to the data obtained by jModeltest was GTR + I + G (I = 0,1450, G = 0,0930), according to the phylogenetic analysis of mitochondrial DNA (Fig. 1a), the female progenitor P0 is S.c.domestica. This conclusion is based on the evi- dence that mitochondrial DNA in birds, as well as in most animal groups, is exclusively inherited through the maternal ways. The same analysis carried out with the nuclear MuSK gene shows that the parental male P0 of the embryos analyzed is very much related to S. barbatus (Fig. 1b). The Cyt b and MuSK region show strongly support to hybrids genetic condition of the three F2 embryos. Intergeneric hybrids are usually sterile, but it is worth noting that genera of Fringillidae are very closely related (the Family as a whole is only 12 million years old, and most genera in the terminal canary-siskin group are <5 million years old). This is simply a case of poor classification with oversplitting or maybe the nature of these lineages are fractals, since in most of the Passeriformes, family-level taxa are more than 20 million years old, and in other groups of Aves families and genera are even older. Then hybridization takes place more easily in captivity. Many authors considered that hybridization in birds is not important because hybrids are formed in proportion 1/50,000 specimens. Despite this, many bird hybrids have been created in captivity. In addition, hybrids produced ex situ under controlled conditions would play an important role for reproductive success and subsequent interspecific viability. The main conclusions derived from this study are as follows: 1) The present report strongly indicates that hybridizations have occurred among S. c. canary x S. barbatus. 2) In this way the molecular evidence reflects and justifies the success in interspecific reproduction between S. barbatus with S. c. domestica and that it is possible to obtain viable fertile hybrids F1 (in this case females) and F2 between these two lineages, 3) And consequently the close genetic affinity between these two genera and the formation of hybrids in natural populations should not discard.

The Condor ◽  
2004 ◽  
Vol 106 (3) ◽  
pp. 674-680 ◽  
Author(s):  
Beatrice Kondo ◽  
Jason M. Baker ◽  
Kevin E. Omland

Abstract A recent phylogenetic survey of the New World orioles (genus Icterus; Omland et al. 1999) suggested that the Baltimore Oriole (I. galbula) and the Black-backed Oriole (I. abeillei) are sister taxa. That survey examined mitochondrial DNA (mtDNA) from a single representative of each species in the genus. Here, we examine mtDNA sequences from 15 Black-backed and 20 Baltimore Orioles. The two species appear to be very recently diverged, with average sequence divergences for both cytochrome b (cyt b) and the control region indicating a probable late Pleistocene split. Despite this very recent divergence, there is one fixed base-pair difference between the species in cyt b and another in the control region, suggesting that one or both species have undergone a bottleneck during or since speciation. This molecular evidence of recent divergence suggests that male plumage differences between Black-backed and Baltimore Orioles evolved very rapidly. Especiación Reciente entre Icterus galbula y Icterus abeillei Resumen. Un estudio filogenético reciente de los orioles del Nuevo Mundo (género Icterus; Omland, et al. 1999) sugiere que Icterus galbula e I. abeillei son taxa hermanos. En aquel estudio se examinó el ADN mitocondrial de un sólo representante de cada especie del género. En este estudio examinamos secuencias de ADN mitocondrial de 15 individuos de I. abeillei y 20 de I. galbula. Las dos especies parecen haber divergido recientemente con una separación promedio de las secuencias nucleotídicas en citocromo b y la región de control que indica que la divergencia ocurrió probablemente a fines del Pleistoceno. A pesar de haber divergido tan recientemente, existe una diferencia fija de un par de bases en la secuencia nucleotídica entre las dos especies en citocromo b y otra diferencia fija en la secuencia nucleotídica de la región de control, lo cual sugiere que una o ambas especies han sufrido un efecto de cuello de botella desde o durante el proceso de especiación. Esta evidencia molecular de divergencia reciente sugiere que los elementos del plumaje en los machos evolucionaron muy rápidamente entre I. abeillei e I. galbula.


2020 ◽  
Vol 13 (1) ◽  
pp. 96-103
Author(s):  
Dorothea Vera Megarani ◽  
Herjuno Ari Nugroho ◽  
Zahrah Prawita Andarini ◽  
Yura Dwi Risa B. R. Surbakti ◽  
Rini Widayanti

Aim: This study aimed to determine the genetic characterization and phylogenetic structure of Indonesian indigenous catfish using cytochrome B (Cyt B) sequences. Materials and Methods: The genomes of 26 catfishes caught from nine rivers from nine different geographical locations around Indonesia were analyzed. The tissue isolation method was used to isolate the total genome of the fishes. Furthermore, polymerase chain reaction was done to amplify the mtDNA Cyt B using the CytBF and CytBR primers. Following sequencing, the analysis of genetic variation and the phylogenetic relationship was performed using MEGA version X software. Results: Cyt B gene sequencing attained a total of 1139 nucleotides encrypting 379 amino acids for all samples. The ClustalW alignment program using MEGA X software revealed 395 substituted nucleotides, which then translated into 63 amino acid variation sites among all 26 samples. No amino acids in catfish BB were different compared to catfish PM, MP, and KR2,3. Catfish MS had one modified amino acid; KR1 and KS had two different amino acids; BF had 38 different amino acids; EM had 31 different amino acids; and BSBJ had 26 different amino acids compared to catfish BB. The most significant alteration of amino acids was between catfish EM and BF (49 amino acids). Conclusion: Indonesian catfish were divided into five clades based on the Cyt B gene. Samples KR and MP (Sumatra); MS and BB (Kalimantan); and PM (Java) were clustered with Hemibagrus nemurus and Hemibagrus wyckioides (Bagridae family). Samples from Kalimantan (KS) and one sample of KR (KR1) from Sumatra were clustered with Sperata seenghala and Hemibagrus spilopterus (Bagridae family). Samples from Java (BSBJ) were clustered with Pseudolais pleurotaenia (Pangasiidae family). Samples EM (Java) were together with Mystus cavasius (Bagridae family). Samples from West Papua were clustered with Potamosilurus latirostris (Ariidae family).


2018 ◽  
Vol 10 (1) ◽  
pp. 6
Author(s):  
Roza Elvyra ◽  
Dedy Duryadi Solihin

The mitochondrial cytochrome b (cyt-b) gene as a phylogenetic marker of lais fish Kryptopterus schilbeides from Kampar River in Riau has been studied. This is a prelimininary research on the utility of cyt-b gene as a molecular marker to obtain species diversity and phylogenetic relationship among Kryptopterus fishes from Kampar River. The primers of L14841 and H15149 were used to amplify the cyt-b gene. The results showed that K. schilbeides has isoleusine at site-81 and metionine at site-114; K. schilbeides from Kampar River and K. schilbeides from GenBank form a phylogeny cluster at 45% value.


2017 ◽  
Vol 29 (4) ◽  
pp. 561-566 ◽  
Author(s):  
Pradeep Adhikari ◽  
Sang-Hyun Han ◽  
Yoo-Kyung Kim ◽  
Tae-Wook Kim ◽  
Tej Bahadur Thapa ◽  
...  

Zootaxa ◽  
2012 ◽  
Vol 3586 (1) ◽  
pp. 78 ◽  
Author(s):  
RUI MIN ◽  
XIAO-YONG CHEN ◽  
JUN-XING YANG ◽  
RICHARD WINTERBOTTOM ◽  
RICHARD L. MAYDEN

Species of the nemacheilid genus Homatula are endemic to the Yunnan-Guizhou Plateau of China. Herein we provide phy-logenetic inferences of species relationships based on complete sequences of the mitochondrial cytochrome b gene (cyt b)and partial sequences of the nuclear recombination activation gene (RAG 1). Both gene trees (and the concatenated dataset) support the recognition of five clades in the genus. These analyses also support the hypothesis that two of the lineagesresolved represent undescribed species awaiting formal description, and, further, that two previously recognized speciesare junior synonyms; both are genetically indistinguishable from other previously recognized species. Divergence timesof the major clades in Homatula are inferred to be Late Pliocene and the Early Pleistocene, and are correlated with themassive geological events associated with the uplift of the Qinghai-Tibetan Plateau occurring at these times. The recon-struction of drainage histories suggests that the fish faunas of the Nu and Lancang rivers are basal relative to other riverinefaunas in the region, and that the Nanpan and the Jinsha rivers share a more recent history than with any other river systems included in our study.


Author(s):  
RA Begum ◽  
MT Alam ◽  
H Jahan ◽  
MS Alam

Labeo calbasu (Family Cyprinidae) was studied at DNA level to know genetic diversity within and between species. The mitochondrial cytochrome b (cyt-b) gene of L. calbasu was sequenced and compared to the corresponding sequences of other Labeo species. DNA was isolated from the tissue sample of L. calbasu using phenol: chloroform extraction method. Forward and reverse primers were designed to amplify the target region of cytochrome b gene. A standard PCR protocol was used for the amplification of the desired region. Then, the forward and reverse sequences obtained were aligned and edited to finalize a length of 510 nucleotides which was submitted to NCBI genbank database. Nucleotide BLAST of this sequence at NCBI resulted 100% sequence similarity with L. calbasu sequence of the same region of cyt-b gene. Multiple sequence alignment of the sequence with seven more Labeo species sequences revealed 120 polymorphic sites, which have been mark of diversity among the species and might be used in molecular identification of the Labeo species. A constructed phylogenetic tree has shown relationship among the Labeo species. This research demonstrated the usefulness of mitochondrial DNA-based approach in species identification. Further, the data will provide appropriate background for studying genetic diversity within-species of the Labeo species in general and of L. calbasu in particular. J. Biodivers. Conserv. Bioresour. Manag. 2019, 5(1): 25-30


Author(s):  
Daria Sanna ◽  
Paolo Merella ◽  
Tiziana Lai ◽  
Sarra Farjallah ◽  
Paolo Francalacci ◽  
...  

The bluespotted cornetfish (Fistularia commersonii) is an Indo-Pacific species that in the last ten years colonized a large part of the Mediterranean basin. The aim of this study was to sequence some portions of the mitochondrial DNA (D-loop II, 16S, 12S and Cyt b) of this fish from different localities of the Mediterranean Sea, in order to evaluate the level of its genetic variability in this area. The genetic analysis performed on specimens from seven localities of Sardinia, Tunisia and Libya revealed the presence of at least five mitochondrial lineages. The results obtained, compared with previous studies, indicate that the use of a sufficient number of mitochondrial regions may allow a more accurate estimate of genetic variability in lessepsian invasions.


2017 ◽  
Vol 47 (3) ◽  
Author(s):  
Maria Fernanda Naegeli Gondim ◽  
◽  
Igor da Cunha Lima Acosta ◽  
Maria Cristina Valdetaro Rangel ◽  
Herbert Sousa Soares ◽  
...  

ABSTRACT: Lowland Tapir ( Tapirus terrestris ) is the second largest South American land mammal. It is strictly herbivorous and its exposure to Toxoplasma gondii should be indicative of environmental contamination by oocysts.In the present study antibodies to T. gondii in 47 Brazilian tapirs maintained ex situ in 10 Brazilian and in one Paraguayan institution were sought in serum samples by the modified agglutination test (MAT ≥25). None of the animals presented clinical signs during the study. From 47 animals 35 (74.5%) were positive with titers of 25 in 8, 50 in 6, 100 in 12, 200 in 5, 400 in 1 and 800 in 3. One animal had samples collected on twice, and 19 were born in captivity. There was no association between occurrence of T. gondii antibodies and gender, and positive animals were reported in all institutions. The high occurrence of seropositive tapirs born ininstitutions (54.3%) confirmed the high exposure of these mammals to T. gondii in captivity. Only two cases ofabortion were reported, but it was not possible to correlate these abortions to T. gondii infection.


2021 ◽  
Vol 3 (1) ◽  
pp. 197-203
Author(s):  
Jayaraj Vijaya Kumaran ◽  
Ahmad Sofiman Othman ◽  
Shahrul-Anuar Mohd Sah ◽  
Seri Intan Mokhtar

Recent morphometric analysis on T. glis in Peninsular Malaysia indicates that there were more than one morphotypes in this species. Thus this study attempts to examine this phenomenon using mitochondrial DNA sequences of Cyt b and CO1 genes. A total of 74 DNA sequences for both genes were generated using available universal primers. Samples from Southern Thailand were found to be misidentified as T. glis when in fact these samples clustered with T. belangeri while one T. tana from Borneo was miss-identified as T. minor. The phylogenetic trees showed that there are at least one confirmed morphotype of Tupaia (new Tupaia sp.) that have yet to be described. The results also showed that the separation of T. glis morphotype 1 and 11 were visible in the combined genes tree, congruent with the morphometric phylogeny but had poor phylogenetic support.


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