scholarly journals Phylogenetic Analysis of Chrysanthemum morifolium Cultivars by rpoC Chloroplastic Gene Sequencing and Morphological Traits

2017 ◽  
Vol 4 (1) ◽  
pp. 89-103 ◽  
Author(s):  
Seyedeh Maryam Salehan ◽  
Farhad Nazarian Firozabadi
2021 ◽  
Vol 9 (4) ◽  
pp. 797
Author(s):  
Davide Mugetti ◽  
Mattia Tomasoni ◽  
Paolo Pastorino ◽  
Giuseppe Esposito ◽  
Vasco Menconi ◽  
...  

The Mycobacterium fortuitum group (MFG) consists of about 15 species of fast-growing nontuberculous mycobacteria (NTM). These globally distributed microorganisms can cause diseases in humans and animals, especially fish. The increase in the number of species belonging to MFG and the diagnostic techniques panel do not allow to clarify their real clinical significance. In this study, biomolecular techniques were adopted for species determination of 130 isolates derived from fish initially identified through biochemical tests as NTM belonging to MFG. Specifically, gene sequencing and phylogenetic analysis were used based on a fragment of the gene encoding the 65 KDa heat shock protein (hsp65). The analyzes made it possible to confirm that all the isolates belong to MFG, allowing to identify the strains at species level. Phylogenetic analysis substantially confirmed what was obtained by gene sequencing, except for six strains; this is probably due to the sequences present in NCBI database. Although the methodology used cannot represent a univocal identification system, this study has allowed us to evaluate its effectiveness as regards the species of MFG. Future studies will be necessary to apply these methods with other gene fragments and to clarify the real pathogenic significance of the individual species of this group of microorganisms.


2017 ◽  
Vol 91 (5) ◽  
pp. 919-932 ◽  
Author(s):  
Daniela S. Monti ◽  
Viviana A. Confalonieri

AbstractThe use of different methodological approaches together with an exhaustive qualitative study has helped to recognize important morphological traits to distinguish species in a systematic and phylogenetic framework.Parabolinella triarthroidesHarrington, 1938 was described based on two cranidia from the Quebrada de Coquena, Purmamarca, Jujuy province. The generic assignment ofP. triarthroideshas been questioned by a phylogenetic analysis, which resolves this species as the sister group ofBienvilliaClark, 1924. To explore the generic assignment of this species, a revision of the type material, plus a morphometric analysis including specimens ofParabolinellaBrøgger, 1882 andBienvilliawere performed. In addition, the original matrix used in the published phylogeny was reviewed and enlarged, including more species ofBienvillia. Continuous characters were coded in different ways in order to compare how they could affect the ordering of specimens and their phylogenetic relationships. Finally, both methodologies were compared, especially in regard to the behavior of the quantitative characters included in the analyses. From the combined analyses, it is shown that similarities between the cranidium ofP. triarthroidesand all otherParabolinellaspecies are true homologies instead of a by-product of evolutionary convergence. Therefore,P. triarthroidesshould be considered a member of this genus. Finally, this study demonstrates that the best strategy for solving systematic problems in groups where the morphological variation is the only source of information (i.e., fossil taxa without living representatives) is the implementation of an integrative approach, combining different methodological techniques and a good description of specimens.


Zootaxa ◽  
2019 ◽  
Vol 4648 (3) ◽  
pp. 473-493 ◽  
Author(s):  
MARCUS THADEU TEIXEIRA SANTOS ◽  
SÍLVIA HELENA DE OLIVEIRA ◽  
THIAGO RIBEIRO DE CARVALHO ◽  
BÁRBARA FERNANDES ZAIDAN ◽  
NELSON RODRIGUES DA SILVA ◽  
...  

A new species of Paratelmatobius is described from the Brazilian Atlantic Forest in the state of Paraná in southern Brazil. Adults, tadpoles, and vocalizations are described. Morphological traits and phylogenetic analysis place the new species within the P. cardosoi group. The new species can be readily distinguished from its congeners by its advertisement call being composed of two note types and comprised of a series of 2–4 notes. The new species is classified as an explosive breeder, having reproductive activity strongly associated with heavy rainfall. This discovery highlights the importance of intensifying survey efforts in the Atlantic Forest, a domain with high levels of species richness and endemism. 


Phytotaxa ◽  
2020 ◽  
Vol 432 (3) ◽  
pp. 274-282
Author(s):  
DENG-FENG XIE ◽  
FU-MIN XIE ◽  
SHENG-BIN JIA ◽  
HAO LI ◽  
XIN YANG ◽  
...  

Allium xinlongense from western Sichuan Province, China, is described as a new species. Its diagnostic morphological characters were confirmed to be valid by comparing them to those of related species, such as A. maowenense, A. chrysanthum, A. rude, A. xichuanense, A. chrysocephalum, and A. herderianum. Molecular phylogenetic analysis (combining ITS and rpL32-trnL markers) indicated that this new species is a member of Allium sect. Daghestanica. A comprehensive description of this new species is provided, including habitat environment and detailed morphological traits.


2007 ◽  
Vol 57 (7) ◽  
pp. 1673-1674 ◽  
Author(s):  
Masami Morotomi ◽  
Fumiko Nagai ◽  
Hiroshi Sakon

Megamonas hypermegale is the sole species of the genus Megamonas included in the List of Prokaryotic Names with Standing in Nomenclature and in the databases of DDBJ, EBI/EMBL and NCBI/GenBank it is placed in the lineage of Bacteroidetes; Bacteroidetes (class); ‘Bacteroidales’; Bacteroidaceae; Megamonas. Phylogenetic analysis based on comparative 16S rRNA gene sequencing showed that this species clustered with species of the family ‘Acidaminococcaceae’ but not with those of the Bacteroidaceae. The genus Megamonas should be placed in the lineage of Firmicutes; Clostridia; Clostridiales; ‘Acidaminococcaceae’; Megamonas.


2011 ◽  
Vol 26 (3) ◽  
pp. 305-315 ◽  
Author(s):  
Lenaïg Kermarrec ◽  
Luc Ector ◽  
Agnès Bouchez ◽  
Frédéric Rimet ◽  
Lucien Hoffmann

2018 ◽  
Vol 5 (1) ◽  
pp. 55-62
Author(s):  
Mitra Shahbazi ◽  
Farhad Nazarian-Firouzabadi ◽  
Omid Ali Akbarpour ◽  
◽  
◽  
...  

2015 ◽  
Vol 55 (1) ◽  
pp. 31-39
Author(s):  
Hyuk-Joon Kwon ◽  
Won-Jin Seong ◽  
Tae-Eun Kim ◽  
Yong-Jin Won ◽  
Jae-Hong Kim

Sign in / Sign up

Export Citation Format

Share Document