scholarly journals Isolation and identification of Aspergilli causing Banana fruit rot

2021 ◽  
Vol 4 (1) ◽  
pp. 8-18
Author(s):  
Fatima Ali ◽  
◽  
Naureen Akhtar ◽  
Shazia Shafique ◽  
Sobiya Shafique ◽  
...  

Banana is a commercially and nutritionally important food crop worldwide and is affected by several fungal diseases. The most important post-harvest disease is fruit rotting. Fruit rot is responsible for significant losses in banana. The present study was therefore, designed to isolate and explore the mycoflora associated with banana fruit rot. For this, infected samples were grown on different media to obtain pure cultures of isolated fungal pathogens. Identifications were made initially on morphological basis and then confirmed by genetic analysis. A comprehensive study of micro and macroscopic features revealed four Aspergillus species with two of <i> Aspergillus fumigatus</i>, one of <i> Aspergillus flavus</i> and one of <i> Aspergillus niger</i>. Genetic analysis by Nucleotide sequence analysis of ITS region of rDNA was performed. The sequence alignment of two different isolates of <i> Aspergillus fumigatus</i> showed \(99\%\) homology to different strains deposited in Genbank i.e., \(004(\text{KU}321562.1)\), \(\text{SK}1(\text{KM}207771.1)\), and \(98\%\) homology to \(\text{AHBR}16(\text{KF}305755.1), \ \ \text{SF}8(\text{KX}011021.1).\)

Plant Disease ◽  
2011 ◽  
Vol 95 (10) ◽  
pp. 1318-1318 ◽  
Author(s):  
C. A. Inácio ◽  
R. C. Pereira-Carvalho ◽  
F. G. A. Morgado ◽  
M. E. N. Fonseca ◽  
L. S. Boiteux

Fruit rots caused by distinct fungal pathogens are commonly observed on tomatoes (Solanum lycopersicum L.) throughout all major production areas in Brazil. Samples of fruits displaying white mycelial growth associated with a profuse salmon-color sporulation were collected in greenhouse-grown tomatoes in Brasília-DF in February 2011. The isolated fungus displayed pink-to-white colonies containing several conidiophores with conidia. Mycelia displayed hyaline hyphae as much as 4 μm in diameter; conidiophores were simple or branched, 112 to 300 (360) μm long, and 2 to 4 μm wide. Conidia were produced in basipetal chains (frequently clustered), were ellipsoidal to pyriform with oblique and prominent truncate basal scars, two-celled, hyaline, and (14-) 16 to 26 (-28) × (6-) 7 to 10 (-12) μm. These characteristics allocated the specimen to Trichothecium roseum (Pers.). Koch's postulates were fulfilled for one fungal isolate by either spraying 10 intact fruits or by placing a drop of a spore suspension (adjusted to 105 conidia/ml) into three to five wounds created on 10 mature fruits of each of two tomato cultivars (Santa Clara and Dominador) by puncturing each fruit with a sterile needle. Five fruits of each cultivar were treated with sterile water as the mock-inoculated control treatment. Identical symptoms to those of the original fruit were observed only in the T. roseum-inoculated samples 5 to 7 days after using both inoculation procedures. Total DNA was extracted from a pure colony of the fungus growing on potato dextrose agar medium and used as template in PCR assays with the internal transcribed spacer (ITS)-4 (5′-TCCTCCGCTTATTGATATGC-3′) and ITS-5 (5′-GGAAGTAAAAGTCGTAACAAGG-3′) primer pair (2). A single amplicon of approximately 630 bp was observed and directly sequenced. Sequence analysis of the Brazilian isolate (GenBank No. JN081877) indicated identity levels of 99% with T. roseum isolates reported on Leucadendron xanthoconus in South Africa (GenBank No. EU552162) and isolates from strawberry fruits in South Korea (GenBank No. HM355750). However, phylogenetic analysis was unable to discriminate isolates of T. roseum from Passalora (GenBank No. EF432764) and Fusarium (GenBank No. GU183369) isolates, confirming the low genetic variability of the ITS region in Hypocreales (3). T. roseum has been reported to be infecting greenhouse tomatoes in the United States (4) and causing postharvest disease of tomatoes in Argentina (1). To our knowledge, this is the first report of T. roseum infecting greenhouse tomatoes in Brazil. References: (1) G. Dal Bello. Australas. Plant Dis. Notes 3:103, 2008. (2) N. L. Glass and G. C. Donaldson. Appl. Environ. Microbiol. 61:1323, 1995. (3) L. Lombard et al. Stud. Mycol. 66:31, 2010. (4) A. W. Welch, Jr. et al. Plant Dis. Rep. 59:255, 1975.


2021 ◽  
Vol 22 (2) ◽  
Author(s):  
SEHRISH IFTIKHAR ◽  
WAHEED ANWAR ◽  
Adnan Akhter ◽  
SAJID ALI ◽  
HAFIZ AZHAR ALI KHAN ◽  
...  

Abstract. Iftikhar S, Anwar W, Akhter A, Ali S, Khan HAA, Khurshid M, Haider MS. 2021. Genetic analysis and pathogenic characterization of Alternaria tenuissima induced fruit rot of bitter gourd. Biodiversitas 22: 617-625. Bitter gourd (Momordica charantia Linn.), belongs to Cucurbitaceae family, is widely cultivated in areas with warm climate. In 2017, fruits of bitter gourd-bearing rot symptoms were observed in the Punjab province of Pakistan. The disease-causing fungal isolate was collected from the diseased fruits on potato dextrose agar (PDA). Microscopic examination revealed short conidiophores arose singly, measuring 79.8- 158.5 μm long and 3.94-7.89 μm thick. The size of conidia varied from 25.7 to 46.45 μm and 8.55-14.39 μm in length and width respectively, which were characteristics of Alternaria spp. To confirm the identity and molecular characterization of the isolate, the internal transcribed spacer (ITS) region, translation elongation factor 1 alpha (TEF1-α), glyceraldehyde 3-phosphate dehydrogenase (GAPDH) and RNA polymerase II large subunit 2 (RPB2) genes were amplified. The sequence analysis of amplicons and phylogenetic studies specified the homology of isolated Alternaria spp. with the previously reported A. tenuissima in GeneBank. The pathogenicity tests conducted on the fruits of bitter gourd confirmed the disease development with typical Alternaria induced rot symptoms, thus satisfied Koch's postulate. To our knowledge, this is the first record of A. tenuissima causing fruit rot of bitter gourd in Pakistan.


Author(s):  
Vu Xuan Tao ◽  
Tran Van Tuan

Agricultural production is greatly influenced by diseases caused by fungi. Penicillium digitatum is a common fungus that causes blue mold in citrus fruits. In addition, Fusarium and Phytophthora species are also recognized as citrus pathogens, involving in root rot and fruit rot. Currently, the use of microbial bioproducts to control fungal pathogens is always prioritized for an organic and sustainable agriculture. Trichoderma species are considered as safe filamentous fungi that antagonize against many fungal plant pathogens. In this study, 10 strains of Trichoderma were isolated and monitored for their antagonistic capacity towards the citrus pathogen P. digitatum. The strains Trichoderma Tr.6, Tr.7 and Tr.8 exhibited inhibitory efficacy of 95-100% against P. digitatum. Additionally, these three strains also strongly suppressed the growth of two other common plant pathogens Fusarium oxysporum and Phytophthora capsici. Based on the morphological characteristics and the sequence analysis of the internal transcribed spacer (ITS) region of rDNA, all three strains Tr.6, Tr.7 and Tr.8 were identified as Trichoderma asperellum. These Trichoderma strains represent promising potentials for applications in the production of bioproducts for the control of pathogenic fungi infecting citrus and other crops.


Plant Disease ◽  
2012 ◽  
Vol 96 (4) ◽  
pp. 590-590 ◽  
Author(s):  
F. T. Arroyo ◽  
M. Camacho ◽  
A. Daza

Monilinia fructicola, causal agent of brown rot, is one of the most important fungal pathogens of stone fruit. In the summer of 2011, Japanese plum fruit of ‘Larry Ann’ (Prunus salicina Lindl) showing symptoms of fruit rot disease were detected and collected from trees in an experimental field at Alcalá del Río (Seville), southwestern Spain. Fruit rot lesions were brown, sunken, and covered with grayish brown tufts or pustules. The majority of infected fruit became dry and mummified on the trees after 30 days. Symptoms were similar to those caused by three Monilinia species, M. laxa, M. fructigena, and M. fructicola (2). Pieces of infected tissue, previously disinfested in 0.6% NaOCl, were placed on potato dextrose agar (PDA) amended with 50 μg of streptomycin per liter and incubated at 22°C with a 12-h photoperiod for 15 days. The isolates produced abundant, grayish white mycelium, which after sporulation became hazel in color, and colonies displayed concentric rings. Colonies produced scarce conidia, which were arranged in branched, monilioid chains. Conidia were one celled, hyaline, ellipsoid to lemon shaped, and measured 15.42 ± 1.91 × 8.02 ± 0.9 μm. The morphological data and growth rates match the description of M. fructicola (Winter) Honey (2–4). Fungal identification was confirmed by PCR using genomic DNA extracted from the mycelia of pure cultures. The DNA was amplified with a common reverse primer and three specific forward primers obtained from a sequence-characterized, amplified region that distinguishes between M. fructicola, M. fructigena, and M. laxa. The size of the amplified fragment (a product of 535 bp) fit with the one described for M. fructicola (2). To confirm the pathogenicity of the isolate, mature ‘Larry Ann’ and ‘Sungold’ plum fruits (six fruits per cultivar) were inoculated by placing an agar plug from the edge of an actively growing colony on PDA directly on the fruit surface. After 5 days of incubation, typical brown rot symptoms developed on inoculated fruit and the fungus was successfully reisolated, thus fulfilling Koch's postulates. No symptoms appeared on control fruit. To our knowledge, this is the first report of M. fructicola on plums in southwestern Spain. M. fructicola is a quarantined pathogen in Europe and has been reported on imported apricot and nectarine (1) and peach in several European countries (3,4). References: (1) E. Bosshard et al. Plant Dis. 90:1554, 2006. (2) M. J. Côté. Plant Dis. 88:1219, 2004. (3) A. De Cal and I. Gell. Plant Dis. 93:763, 2009. (4). C. Pellegrino et al. Plant Dis. 93:668, 2009.


Author(s):  
N. G. Ogbuji ◽  
A. E. Ataga ◽  
P. M. Tari-Ukuta ◽  
C. J. Olisedeme

Aims: A study was conducted to identify fungal species isolated from dumpsite soil in University of Port Harcourt using molecular techniques. Methodology: Molecular methods for determining the species of a fungus based on the amplification and sequencing of the internal subscribed spacer (ITS) region of the fungal rRNA operon using molecular markers was applied. Soil sample was collected from a dumpsite in the University of Port Harcourt, Rivers State, Nigeria. Isolation of fungi associated with the dumpsite soil was carried out using spread plate method. Fungal genomic DNA was extracted using Quick-DNA Fungal/Bacterial Miniprep kit. The ITS1-2 gene of the isolates was amplified by Polymerase Chain Reaction (PCR) using the primer pair; ITS4 and ITS5. Results: The sequences of the amplified ITS region were blasted against known sequences on the National Centre for Biotechnology Information (NCBI) database. Nucleotide sequence analysis revealed the species identity of the fungal isolates to be: Aspergillus fumigatus, Trichoderma harzianum, Aspergillus felis, Aspergillus templicola, Aspergillus flavipes, Aspergillus fumigatus and Cunninghamella binariae. Phylogenetic analysis was carried out to ascertain the relationship between the isolates and other closely-related isolates on GenBank. Isolates 2 (Trichoderma harzianum) and 7 (Cunninghamella binariae), 3 (Aspergillus felis) and 6 (Aspergillus fumigatus), and 4 (Aspergillus templicola) and 5 (Aspergillus flavipes) were found to be more closely related to each other. Conclusion: The molecular techniques employed successfully identified the organisms to the species level as these techniques are based on the genetic constitution of organisms. The result obtained from this study will complement the information on the fungal organisms associated with dumpsite soil.


Viruses ◽  
2021 ◽  
Vol 13 (4) ◽  
pp. 686
Author(s):  
Hasan Nazik ◽  
Ioly Kotta-Loizou ◽  
Gabriele Sass ◽  
Robert H. A. Coutts ◽  
David A. Stevens

Aspergillus and Pseudomonas compete in nature, and are the commonest bacterial and fungal pathogens in some clinical settings, such as the cystic fibrosis lung. Virus infections of fungi occur naturally. Effects on fungal physiology need delineation. A common reference Aspergillus fumigatus strain, long studied in two (of many) laboratories, was found infected with the AfuPmV-1 virus. One isolate was cured of virus, producing a virus-free strain. Virus from the infected strain was purified and used to re-infect three subcultures of the virus-free fungus, producing six fungal strains, otherwise isogenic. They were studied in intermicrobial competition with Pseudomonasaeruginosa. Pseudomonas culture filtrates inhibited forming or preformed Aspergillus biofilm from infected strains to a greater extent, also seen when Pseudomonas volatiles were assayed on Aspergillus. Purified iron-chelating Pseudomonas molecules, known inhibitors of Aspergillus biofilm, reproduced these differences. Iron, a stimulus of Aspergillus, enhanced the virus-free fungus, compared to infected. All infected fungal strains behaved similarly in assays. We show an important consequence of virus infection, a weakening in intermicrobial competition. Viral infection may affect the outcome of bacterial–fungal competition in nature and patients. We suggest that this occurs via alteration in fungal stress responses, the mechanism best delineated here is a result of virus-induced altered Aspergillus iron metabolism.


2010 ◽  
Vol 125 (2) ◽  
pp. AB15
Author(s):  
M.A. Buchheim ◽  
N. Abel ◽  
E. Levetin

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Abdelazeem M. Algammal ◽  
Mahmoud E. Elsayed ◽  
Hany R. Hashem ◽  
Hazem Ramadan ◽  
Norhan S. Sheraba ◽  
...  

Abstract Background Meat-products are considered an enriched media for mycotoxins. This study aimed to investigate the prevalence of toxigenic Aspergillus species in processed meat samples, HPLC-quantitative measurement of aflatoxin B1 and ochratoxin A residues, and molecular sequencing of aflR1 and pks genes. One hundred and twenty processed beef meat specimens (basterma, sausage, and minced meat; n = 40 for each) were collected from Ismailia Province, Egypt. Samples were prepared for total mold count, isolation, and identification of Aspergillus species. All samples were analyzed for the production of both Aflatoxin B1 and Ochratoxin A mycotoxins by HPLC. Molecular identification of Aspergillus flavus and Aspergillus ochraceus was performed using PCR amplification of the internal transcribed spacer (ITS) region; furthermore, the aflR1 and pks genes were sequenced. Results The total mold count obtained from sausage samples was the highest one, followed by minced meat samples. The prevalence of A. flavus was (15%), (7.5%), and (10%), while the prevalence of A. ochraceus was (2.5%), (10%), and (0%) in the examined basterma, sausage, and minced meat samples, respectively. Using PCR, the ITS region was successfully amplified in all the tested A. flavus and A. ochraceus strains. Aflatoxin B1 was detected in six basterma samples (15%). Moreover, the ochratoxin A was detected only in four sausage samples (10%). The aflR1 and pks genes were amplified and sequenced successfully and deposited in the GenBank with accession numbers MF694264 and MF694264, respectively. Conclusions To the best of our knowledge, this is the first report concerning the HPLC-Molecular-based approaches for the detection of aflatoxin B1 and ochratoxin A in processed beef meat in Egypt. The production of aflatoxin B1 and ochratoxin A in processed meat constitutes a public health threat. Aflatoxin B1 is commonly associated with basterma samples. Moreover, ochratoxin A was detected frequently in sausage samples. The routine inspection of mycotoxins in processed meat products is essential to protect human consumers.


Toxins ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 397
Author(s):  
Laura Settier-Ramírez ◽  
Gracia López-Carballo ◽  
Pilar Hernández-Muñoz ◽  
Angélique Fontana ◽  
Caroline Strub ◽  
...  

Wild yeasts isolated from the surface of apples were screened for antagonistic activity against Penicillium expansum, the main producer of the mycotoxin patulin. Three antagonistic yeasts (Y33, Y29 and Y24) from a total of 90 were found to inhibit P. expansum growth. Identification by ITS region sequence and characterization showed that three selected isolates of yeast should be different strains of Metschnikowia pulcherrima. Several concentrations of the selected yeasts were used to study their in vitro antifungal effectivity against P. expansum on Petri dishes (plates with 63.6 cm2 surface) whereas their potential activity on patulin reduction was studied in liquid medium. Finally, the BCA that had the best in vitro antifungal capacity against P. and the best patulin degradation capacity was selected to be assessed directly on apples. All the selected strains demonstrated antifungal activity in vitro but the most efficient was the strain Y29. Isolated strains were able to reduce patulin content in liquid medium, Y29 being the only strain that completely reduced patulin levels within 120 h. The application of Y29 as biocontrol agent on the surface of apples inoculated with P. expansum, inhibited fungal growth and patulin production during storage. Therefore, the results shown that this yeast strain could be used for the reduction of P. expansum and its mycotoxin in apples or apple-based products by adapting the procedure application.


1969 ◽  
Vol 15 (12) ◽  
pp. 1365-1371 ◽  
Author(s):  
K. -J. Cheng ◽  
G. A. Jones ◽  
F. J. Simpson ◽  
M. P. Bryant

Fifteen strains of bacteria capable of degrading rutin anaerobically were isolated from bovine rumen contents and identified by morphological and biochemical evidence as strains of Butyrivibrio sp. Three cultures from a laboratory collection of 53 strains of rumen bacteria also used rutin anaerobically. Two, Butyrivibrio fibrisolvens D1 and Selenomonas ruminantium GA192, cleaved the glycosidic bond of rutin and fermented the sugar but did not degrade the insoluble aglycone produced; the third strain, Peptostreptococcus sp. B178, degraded the substrate to soluble products. Butyrivibrio sp. C3 degraded rutin, quercitrin, and naringin to water-soluble products, showing that the organism cleaved the heterocyclic ring of these compounds. Butyrivibrio sp. C3 fermented the sugar moiety of hesperidin but did not cleave the heterocyclic ring. It did not attack quercetin, taxifolin, protocatechuic acid, or phloroglucinol. In a medium containing rumen fluid, Butyrivibrio sp. C3 degraded rutin more than twice as fast as it did in a medium containing enzymatic casein hydrolyzate, volatile fatty acids, yeast extract, and hemin in place of rumen fluid.The observations reported in this paper are believed to represent the first recorded demonstration of degradation of the heterocyclic ring structure of rutin and other bioflavonoids in pure cultures of anaerobic bacteria.


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