scholarly journals Degradation of Monochlorophenols by Pseudomonas putida CP1 in the Presence of Growth Supplements

1970 ◽  
Vol 24 (2) ◽  
pp. 115-118 ◽  
Author(s):  
ANM Fakhruddin ◽  
M Alamgir Hossain
Keyword(s):  
Pseudomonas Putida ◽  
Yeast Extract ◽  
C:N Ratio ◽  
Sole Source ◽  
Optimum Level ◽  
Carbon And Nitrogen ◽  
Low Concentrations ◽  
Growth Supplement ◽  
Level 3 ◽  
Enhanced Degradation

Influence of readily degradable additional sources of carbon and nitrogen on the degradation of monochlorophenols by Pseudomonas putida CP1 was investigated. The organism grew on all three isomers of monochlorophenols when supplied as the sole source of carbon and energy. Low concentrations (0.01 to 0.5%, w/v) of yeast extract enhanced degradation of monochlorophenols. The order in terms of rate of removal of monochlorophenols was 4-chlorophenol > 2-chlorophenol > 3-chlorophenol, both in the presence and absence of the growth supplements. The rate of removal of monochlorophenols was highest when carbon:nitrogen (C:N) ratio maintained at optimum level (3:1) with monochlorophenols and growth substrates. The organism clumped when grown in the presence of monochlorophenols alone. The degree of clumping decreased with the addition of growth supplements. Keywords: Biodegradation, Growth supplement, Monochlorophenol, Pseudomonas putida CP1DOI: http://dx.doi.org/10.3329/bjm.v24i2.1254  Bangladesh J Microbiol, Volume 24, Number 2, December 2007, pp 115-118   

scholarly journals Carbon-driven eco-agriculture without nitrogen deficiency

2013 ◽  
Author(s):  
Masato Oda ◽  
Kenji Tamura ◽  
Hiroko Nakatsuka ◽  
Miki Nakata ◽  
Yukimi Hayashi
Keyword(s):  
Organic Material ◽  
Soil Aggregates ◽  
C:N Ratio ◽  
Nitrogen Deficiency ◽  
Fertilizer Application ◽  
Carbon And Nitrogen ◽  
Large Numbers ◽  
Low Concentrations ◽  
Number Of Microorganisms ◽  
Order Of Magnitude

A farmer grew crops by adding only organic material with a high C:N ratio (40) to the soil for 30 years. He focused on the role of carbon in increasing the number of microorganisms. This idea was based on the concepts of 1) indirect crop management via microorganisms and 2) providing carbon to microorganisms for energy. Here, we name this practice “carbon -driven eco-agriculture” (CDEA). We determined the effect of CDEA on a laterite soil vegetable field in Sao Paulo for 4 years. The yield exceeded the national average. Soil aggregates formed to 29 cm thickness, and the microbial activity was one order of magnitude higher than that in a conventional control field. The output/input ratios of carbon and nitrogen were 1.88 –2.35 and 3.58–6.00, respectively, indicating a sustainable system for these elements. Incorporating high-C:N-ratio (>20) organic material results in nitrogen deficiency. However, our results indicate that large numbers of microorganisms provide crops with sufficient nitrogen at low concentrations. This method overcomes the yield limitation of chemical fertilizer application and reverses soil degradation.

PROTEINASE PRODUCTION IN RELATION TO GROWTH OF A MICROCOCCUS SPECIES

1961 ◽  
Vol 7 (2) ◽  
pp. 111-117 ◽  
Author(s):  
I. J. McDonald
Keyword(s):  
Sodium Chloride ◽  
Glutamic Acid ◽  
Yeast Extract ◽  
Synthetic Medium ◽  
Sole Source ◽  
Proteinase Production ◽  
Carbon And Nitrogen ◽  
Stimulation Of

Production of proteinase(s) by a Micrococcus sp. (A.T.C.C. No. 407) in general was related to the amount of growth. However, addition of 2% sodium chloride to tryptone yeast extract broth resulted in an apparent stimulation of proteinase production without an increase in growth. The salt apparently protected the enzyme since it was found that proteinase preparations were inactivated less rapidly in the presence than in the absence of salt. Although the organism did not require carbohydrate for growth, it utilized maltose but not glucose or other carbohydrates. In the presence of maltose, growth and proteinase production were stimulated. The organism produced proteinase on a minimal synthetic medium containing glutamic acid as the sole source of carbon and nitrogen.

scholarly journals Carbon-driven eco-agriculture without nitrogen deficiency

2013 ◽  
Author(s):  
Masato Oda ◽  
Kenji Tamura ◽  
Hiroko Nakatsuka ◽  
Miki Nakata ◽  
Yukimi Hayashi
Keyword(s):  
Organic Material ◽  
Soil Aggregates ◽  
C:N Ratio ◽  
Nitrogen Deficiency ◽  
Fertilizer Application ◽  
Carbon And Nitrogen ◽  
Large Numbers ◽  
Low Concentrations ◽  
Number Of Microorganisms ◽  
Order Of Magnitude

A farmer grew crops by adding only organic material with a high C:N ratio (40) to the soil for 30 years. He focused on the role of carbon in increasing the number of microorganisms. This idea was based on the concepts of 1) indirect crop management via microorganisms and 2) providing carbon to microorganisms for energy. Here, we name this practice “carbon -driven eco-agriculture” (CDEA). We determined the effect of CDEA on a laterite soil vegetable field in Sao Paulo for 4 years. The yield exceeded the national average. Soil aggregates formed to 29 cm thickness, and the microbial activity was one order of magnitude higher than that in a conventional control field. The output/input ratios of carbon and nitrogen were 1.88 –2.35 and 3.58–6.00, respectively, indicating a sustainable system for these elements. Incorporating high-C:N-ratio (>20) organic material results in nitrogen deficiency. However, our results indicate that large numbers of microorganisms provide crops with sufficient nitrogen at low concentrations. This method overcomes the yield limitation of chemical fertilizer application and reverses soil degradation.

scholarly journals Characterization of a broad-specificity non-haem iron N-demethylase from Pseudomonas putida CBB5 capable of utilizing several purine alkaloids as sole carbon and nitrogen source

Microbiology ◽  
2011 ◽  
Vol 157 (2) ◽  
pp. 583-592 ◽  
Author(s):  
Ryan M. Summers ◽  
Tai Man Louie ◽  
Chi Li Yu ◽  
Mani Subramanian
Keyword(s):  
Pseudomonas Putida ◽  
Reductase Activity ◽  
Hypothetical Protein ◽  
Sole Source ◽  
Carbon And Nitrogen ◽  
Native Molecular Mass ◽  
Purine Alkaloids ◽  
Naturally Occurring ◽  
Haem Iron

N-Demethylation of many xenobiotics and naturally occurring purine alkaloids such as caffeine and theobromine is primarily catalysed in higher organisms, ranging from fungi to mammals, by the well-studied membrane-associated cytochrome P450s. In contrast, there is no well-characterized enzyme for N-demethylation of purine alkaloids from bacteria, despite several reports on their utilization as sole source of carbon and nitrogen. Here, we provide what we believe to be the first detailed characterization of a purified N-demethylase from Pseudomonas putida CBB5. The soluble N-demethylase holoenzyme is composed of two components, a reductase component with cytochrome c reductase activity (Ccr) and a two-subunit N-demethylase component (Ndm). Ndm, with a native molecular mass of 240 kDa, is composed of NdmA (40 kDa) and NdmB (35 kDa). Ccr transfers reducing equivalents from NAD(P)H to Ndm, which catalyses an oxygen-dependent N-demethylation of methylxanthines to xanthine, formaldehyde and water. Paraxanthine and 7-methylxanthine were determined to be the best substrates, with apparent K m and kcat values of 50.4±6.8 μM and 16.2±0.6 min−1, and 63.8±7.5 μM and 94.8±3.0 min−1, respectively. Ndm also displayed activity towards caffeine, theobromine, theophylline and 3-methylxanthine, all of which are growth substrates for this organism. Ndm was deduced to be a Rieske [2Fe–2S]-domain-containing non-haem iron oxygenase based on (i) its distinct absorption spectrum and (ii) significant identity of the N-terminal sequences of NdmA and NdmB with the gene product of an uncharacterized caffeine demethylase in P. putida IF-3 and a hypothetical protein in Janthinobacterium sp. Marseille, both predicted to be Rieske non-haem iron oxygenases.

Carbon and nitrogen and their elemental and isotopic ratios in the bottom sediment of the Solina-Myczkowce complex of reservoirs

2008 ◽  
Vol 37 (3) ◽  
Author(s):  
Piotr Koszelnik ◽  
Janusz Tomaszek ◽  
Renata Gruca-Rokosz
Keyword(s):  
Bottom Sediment ◽  
C:N Ratio ◽  
Isotopic Ratios ◽  
Carbon And Nitrogen

Carbon and nitrogen and their elemental and isotopic ratios in the bottom sediment of the Solina-Myczkowce complex of reservoirsThe studies concerned the ecosystem of the Solina-Myczkowce cascade of reservoirs. While the elemental C:N ratio was higher in the Solina Reservoir branches and in the Myczkowce Reservoir (>10), the values for stations located near the Solina Dam were low (<10). Markedly, the lowest values for δ

scholarly journals Optimisation of pH, Temperature and Carbon Nitrogen Ratio for the Degradation of m-Chlorophenol by Pseudomonas putida CP1

1970 ◽  
Vol 23 (2) ◽  
pp. 159-161 ◽  
Author(s):  
ANM Fakhruddin ◽  
M Alamgir Hossain
Keyword(s):  
Chemical Oxygen Demand ◽  
Pseudomonas Putida ◽  
C:N Ratio ◽  
Oxygen Demand ◽  
Hydroxyl Group ◽  
Ph Optimum ◽  
Effective Removal ◽  
Carbon Nitrogen Ratio ◽  
Chlorine Substituent ◽  
Nitrogen Ratio

Aromatic pollutants like m-chlorophenol is toxic to the environment and chlorophenol containing a metachlorine are more persistent under aerobic conditions than compounds lacking a chlorine substituent in positions meta to hydroxyl group. Therefore, it should be removed effectively from the environment. In order to increase the degradative activity, the optimum conditions for m-chlorophenol degradation by Pseudomonas putida CP1, some physicochemical conditions like pH, temperature and carbon nitrogen ratio for the growth and degradation of most persistent monochlorophenol, m-chlorophenol by the organism was optimised. The pH optimum for m-chlorophenol degradation by the bacterium was between pH 6.5 and 7.0 and the temperature optimum was 30°C for removal activity. Carbon : nitrogen (C:N) ratio of 3:1 was found best for effective removal of chemical oxygen demand (COD) and m-chlorophenol by the bacterium. Keywords: m-Chlorophenol degradation, Pseudomonas putida CP1, Chemical oxygen demand (COD)DOI: http://dx.doi.org/10.3329/bjm.v23i2.884  Bangladesh J Microbiol, Volume 23, Number 2, December 2006, pp 159-161

The metabolism of cyclohexanecarboxylic acid and 3-cyclohexenecarboxylic acid by Pseudomonas putida

1982 ◽  
Vol 28 (12) ◽  
pp. 1324-1329 ◽  
Author(s):  
E. R. Blakley ◽  
B. Papish
Keyword(s):  
Benzoic Acid ◽  
Pseudomonas Putida ◽  
Sole Source ◽  
Oxidation Pathway ◽  
Cyclohexanecarboxylic Acid

A strain of Pseudomonas putida grew rapidly on cyclohexanecarboxylic acid as a sole source of carbon. A CoA-mediated β-oxidation pathway was induced for the metabolism of the compound. The organism could not utilize 3-cyclohexenecarboxylic acid as a sole source of carbon for growth, but cells grown on gluconate in the presence of 3-cyclohexenecarboxylic acid were induced to metabolize cyclohexanecarboxylic acid, benzoic acid, and catechol. Evidence is presented that 3-cyclohexenecarboxylic acid was slowly metabolized by a β-oxidation pathway and by a pathway involving benzoic acid as an intermediate. For this strain of Pseudomonas putida, 3-cyclohexenecarboxylic acid acts as an oxidizable, nongrowth substrate and induces the metabolism of cyclohexanecarboxylic acid and benzoic acid.

scholarly journals Amino Acid-Mediated Induction of the Basic Amino Acid-Specific Outer Membrane Porin OprD from Pseudomonas aeruginosa

1999 ◽  
Vol 181 (17) ◽  
pp. 5426-5432 ◽  
Author(s):  
Martina M. Ochs ◽  
Chung-Dar Lu ◽  
Robert E. W. Hancock ◽  
Ahmed T. Abdelal
Keyword(s):  
Amino Acids ◽  
Pseudomonas Aeruginosa ◽  
Amino Acid ◽  
Regulatory Protein ◽  
Basic Amino Acid ◽  
Sole Source ◽  
Activation Mechanism ◽  
Beta Lactam ◽  
Mobility Shift ◽  
Carbon And Nitrogen

ABSTRACT Pseudomonas aeruginosa can utilize arginine and other amino acids as both carbon and nitrogen sources. Earlier studies have shown that the specific porin OprD facilitates the diffusion of basic amino acids as well as the structurally analogous beta-lactam antibiotic imipenem. The studies reported here showed that the expression of OprD was strongly induced when arginine, histidine, glutamate, or alanine served as the sole source of carbon. The addition of succinate exerted a negative effect on induction ofoprD, likely due to catabolite repression. The arginine-mediated induction was dependent on the regulatory protein ArgR, and binding of purified ArgR to its operator upstream of theoprD gene was demonstrated by gel mobility shift and DNase assays. The expression of OprD induced by glutamate as the carbon source, however, was independent of ArgR, indicating the presence of more than a single activation mechanism. In addition, it was observed that the levels of OprD responded strongly to glutamate and alanine as the sole sources of nitrogen. Thus, that the expression ofoprD is linked to both carbon and nitrogen metabolism ofPseudomonas aeruginosa.

scholarly journals Formulation of a semi-defined medium for high cell density cultivation of Escherichia coli in shake flasks

2016 ◽  
Author(s):  
Wenfa Ng ◽  
Yen-Peng Ting
Keyword(s):  
Cell Density ◽  
Yeast Extract ◽  
High Cell Density ◽  
Nitrogen Sources ◽  
Buffer System ◽  
High Cell ◽  
Carbon And Nitrogen Sources ◽  
E Coli ◽  
Carbon And Nitrogen ◽  
Shake Flasks

Microbes for environmental research should be cultured in growth media with characteristics (e.g., pH, ionic strength, and organic and ionic composition) as close to their original habitat as possible. Additionally, the medium should also enable high cell density to be obtained - needed for providing sufficient cells in subsequent experiments. This in-progress report describes the formulation of a medium with an environmentally-relevant composition (lack of complex organics), and that allows aerobic high cell density cultivation of Escherichia coli DH5α in shake flasks. The formulated medium comprises four components: a buffer system (K2HPO4: 12.54 g/L and KH2PO4: 2.31 g/L), vitamins (yeast extract: 12.0 g/L), salts (NaCl: 5.0 g/L and MgSO4: 0.24 g/L), and carbon and nitrogen sources (D-Glucose: 6.0 g/L and NH4Cl: 1.5 g/L). Notable characteristics of this medium were: high capacity phosphate buffer system (89 mM phosphate); 1:1 molar ratio between D-Glucose and NH4Cl; and yeast extract providing trace elements and a secondary carbon and nitrogen source. Growth experiments revealed that an OD600nm of 9 was attained after 24 hours of cultivation at 37 oC. Glucose and NH4Cl serve as primary carbon and nitrogen sources for this phase of growth. After 48 hours, the OD600nm reached 11, where carbohydrates, lipids and proteins in yeast extract provided the nutrients for biomass formation. Broth’s pH varied between 5.5 and 7.8 during cultivation, which was in the range conducive for E. coli growth. In comparison, the OD600nm of E. coli reached 1.4, 3.2, and 9.2 in three commonly used complex media; Nutrient Broth, LB Lennox, and Tryptic Soy Broth, respectively, over 48 hours under identical culture conditions. In addition, the formulated medium was able to maintain a large viable cell population for a longer period of time (three days) compared to Tryptic Soy Broth. Thus, preliminary data suggested that the formulated medium holds potential for use as a high cell density aerobic growth medium for Gram-negative bacteria.

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