scholarly journals Botryoidal and Spherulitic Aragonite in Carbonates Associated with Microbial Mats: Precipitation or Diagenetic Replacement Product?

2021 ◽  
Vol 9 ◽  
Author(s):  
Yuzhu Ge ◽  
Giovanna Della Porta ◽  
Chelsea L. Pederson ◽  
Stephen W. Lokier ◽  
René Hoffmann ◽  
...  

Similar carbonate fabrics may result from different pathways of precipitation and diagenetic replacement. Distinguishing the underlying mechanisms leading to a given carbonate fabric is relevant, both in terms of an environmental and diagenetic interpretation. Prominent among carbonate fabrics are aragonite botryoids and spherulites, typically interpreted as direct seawater precipitates and used as proxies for fluid properties and depositional environments. This study investigated μm to mm-scale Holocene botryoidal and spherulitic aragonite from marine and non-marine carbonate settings associated with microbial mats, and reports two distinct formation mechanisms: 1) early diagenetic replacement, and 2) primary precipitation via nanocrystal aggregation. In the intertidal microbial mats of Khawr Qantur (Abu Dhabi), botryoidal and spherulitic aragonite are replacement products of heavily micritized bioclasts. To form the botryoidal and spherulitic aragonite, skeletal rods and needles, resulting from disintegration of micritized bioclasts, recrystallize into nanocrystals during early marine diagenesis. These nanocrystals then grow into fibrous crystals, forming botryoidal and spherulitic aragonite. In the lacustrine microbial bioherms of the hypersaline Great Salt Lake (United States) and in the hydrothermal travertines of Bagni San Filippo (Italy), botryoidal and spherulitic aragonite evolve from nanocrystals via precipitation. The nanocrystals are closely associated with extracellular polymeric substances in microbial biofilms and aggregate to form fibrous crystals of botryoidal and spherulitic aragonite. The studied fabrics form a portion of the bulk sediment and show differences in terms of their formation processes and petrological features compared to the often larger (few mm to over 1 m) botryoidal and spherulitic aragonite described from open-marine reefal cavities. Features shown here may represent modern analogues for ancient examples of carbonate depositional environments associated with microbialites. The implication of this research is that botryoidal and spherulitic aragonite associated with microbial mats are relevant in paleoenvironmental interpretations, but must be combined with a detailed evaluation of their formation process. Care must be taken as the term “botryoidal and spherulitic aragonite” may in fact include, from the viewpoint of their nucleation and formation mechanism, similar fabrics originated from different pathways. At present, it seems unclear to which degree the μm to mm-scale botryoids and spherulites described here are comparable to their cm-to dm-size counterparts precipitated as cements in the open pore space of reefal environments. However, it is clear that the investigation of ancient botryoidal and spherulitic aragonite must consider the possibility of an early diagenetic replacement origin of these precipitates.

2020 ◽  
Vol 90 (11) ◽  
pp. 1601-1613
Author(s):  
Hannah P. Boelts ◽  
Yadira Ibarra ◽  
Clive Hayzelden

ABSTRACT Diatoms are common in terrestrial freshwater carbonate environments, but their influence on the resulting carbonate texture and porosity remains unquantified. This study investigates the effect of diatoms on the textural variability and syndepositional porosity of spring-associated carbonate coated grains from a freshwater spring in Henry Cowell State Park, northern California, USA. Carbonate coated grains (n = 60) were collected from the distal-most pool of the spring (∼ 300 m from the spring source) and the porosity of the 1 cm diameter fraction (n = 20) was determined using the ImageJ software by adjusting the threshold size for pores > 1000 μm2. Results reveal a strong positive correlation between the number of pores and the number of diatoms examined in each coated grain (r = 0.77). There is a moderate positive relationship between the length of the largest diatom and the minor-axis diameter of a best-fit ellipse of its corresponding pore (r = 0.60). The total pore area for pores associated with at least one diatom was significantly greater than the total pore area of pores that did not enclose diatom frustules (t = 1.80, p < 0.05). Textural observations show that fine-grained laminated textures contain fewer diatoms than the porous textures, suggesting that diatoms disrupt lamination continuity by introducing pore space. These findings have implications for the influence of diatoms on the syndepositional porosity of carbonate rocks from the Cretaceous to Recent and may help explain textural differences between modern marine carbonate microbialites and their Precambrian counterparts.


Minerals ◽  
2019 ◽  
Vol 9 (10) ◽  
pp. 632 ◽  
Author(s):  
Pan ◽  
Zhao ◽  
Tucker ◽  
Zhou ◽  
Jiang ◽  
...  

The halophilic bacterium Halomonas smyrnensis from a modern salt lake used in experiments to induce biomineralization has resulted in the precipitation of monohydrocalcite and other carbonate minerals. In this study, a Halomonas smyrnensis WMS‐3 (GenBank:MH425323) strain was identified based on 16S rDNA homology comparison, and then cultured in mediums with 3% NaCl concentration to induce monohydrocalcite at different Mg/Ca molar ratios of 0, 2, 5, 7, and 9. The growth curve of WMS‐3 bacteria, pH values, NH4+ concentration, HCO3− and CO32− concentration, carbonic anhydrase (CA) activity, and the changes in Ca2+ and Mg2+ ion concentration were determined to further explore the extracellular biomineralization mechanism. Moreover, the nucleation mechanism of monohydrocalcite on extracellular polymeric substances (EPS) was analyzed through studying ultrathin slices of the WMS‐3 strain by High resolution transmission electron microscopy (HRTEM), Selected area election diffraction (SAED), Scanning transmission electron microscopy (STEM), and elemental mapping, besides this, amino acids in the EPS were also analyzed. The results show that pH increased to about 9.0 under the influence of ammonia and CA activity. The precipitation ratio (%, the ratio of the mass/volume concentration) of the Ca2+ ion was 64.32%, 62.20%, 60.22%, 59.57%, and 54.42% at Mg/Ca molar ratios of 0, 2, 5, 7, and 9, respectively, on the 21st day of the experiments, and 6.69%, 7.10%, 7.74%, 8.09% for the Mg2+ ion concentration at Mg/Ca molar ratios 2, 5, 7, and 9, respectively. The obtained minerals were calcite, Mg‐rich calcite, aragonite, and hydromagnesite, in addition to the monohydrocalcite, as identified by X-ray diffraction (XRD) analyses. Monohydrocalcite had higher crystallinity when the Mg/Ca ratio increased from 7 to 9; thus, the stability of monohydrocalcite increased, also proven by the thermogravimetry (TG), derivative thermogravimetry (DTG) and differential scanning calorimetry (DSC) analyses. The C=O and C–O–C organic functional groups present in/on the minerals analyzed by Fourier transform infrared spectroscopy (FTIR), the various morphologies and the existence of P and S determined by scanning electron microscope-energy dispersive spectrometer (SEM‐EDS), the relatively more negative stable carbon isotope values (−16.91‰ to −17.91‰) analyzed by a carbon isotope laser spectrometer, plus the typical surface chemistry by XPS, all support the biogenesis of these mineral precipitates. Moreover, Ca2+ ions were able to enter the bacterial cell to induce intracellular biomineralization. This study is useful to understand the mechanism of biomineralization further and may provide theoretical reference concerning the formation of monohydrocalcite in nature.


2017 ◽  
Vol 188 (1-2) ◽  
pp. 5 ◽  
Author(s):  
Anton V. Kolesnikov ◽  
Taniel Danelian ◽  
Maxime Gommeaux ◽  
Andrey V. Maslov ◽  
Dmitriy V. Grazhdankin

In the course of studying modern halotolerant microbial mats in salterns near the village of Kervalet, western France, we observed fanning-out and curved series of macroscopic ridges on the surface of a newly formed biofilm. The structure resembles the late Ediacaran fossil Arumberia which is globally distributed in Australia, Avalonia, Baltica, Siberia and India, always confined to intertidal and delta-plain settings subject to periodic desiccation or fluctuating salinity. Although the origin of the structure observed in modern microbial mats remains enigmatic, wrinkled and rugose variants of microbial biofilms in general exhibit increased levels of resistance to several environmental stresses. By analogy, the fossil Arumberia could be interpreted as a microbial mat morphotype (the “Arumberia” morph) developed in response to environmental perturbations in terminal Ediacaran shallow marine basins. If environmental conditions are likely to be responsible for the formation of Arumberia, it is not that a specific biological community has survived since the Ediacaran – it is that the biological response of microbial communities that manifested itself quite commonly in certain terminal Ediacaran and early Cambrian environments can still be found (seemingly in much more restricted settings) today.


1999 ◽  
Vol 136 (2) ◽  
pp. 189-204 ◽  
Author(s):  
K. T. RATCLIFFE ◽  
A. T. THOMAS

Based on outcrop studies and borehole data, six bedded lithofacies and two reef types are recognized within the Much Wenlock Limestone Formation of the English Midlands and Welsh Borderland. The lithofacies are interpreted to represent a series of carbonate shelf environments extending from below storm wave-base to well above fair weather wave-base. In common with many other shallow marine carbonate depositional systems, the principal controls on lithofacies development were hydrodynamic energy, the supply of fine clastic sediment, and patterns of colonization of the sea floor by organisms. Reef distribution was probably controlled by the nature of the substrate, water circulation, and rate of siliciclastic sedimentation. A depositional model is proposed which incorporates biostratigraphical evidence suggesting that the formation youngs to the west on the northern part of the shelf. Deposition of the Much Wenlock Limestone Formation there began in the West Midlands, where 12 m of microbial limestone were lain down in a mid-shelf setting during a local regression. The remainder of the shelf was dominated by low energy siliciclastic deposition at that time. The West Midlands then returned to somewhat deeper water, lower energy deposition, the resulting impure calcareous muds becoming diagenetically changed into the nodular limestone lithofacies. That lithofacies is commonly overlain successively by the interbedded limestone and silty mudstone lithofacies, and then the crinoidal grainstone lithofacies. This vertical lithofacies sequence is uniform over the entire northern part of the shelf, reflecting a gradual decrease in water depth. The crinoidal grainstone lithofacies was deposited as a wave-influenced carbonate sandbody which prograded from east to west. Lithofacies sequences on the southern shelf are laterally impersistent, probably due to greater tectonic instability and topographical variablity.


2007 ◽  
Vol 44 (6) ◽  
pp. 835-856 ◽  
Author(s):  
Sandy M Bonny ◽  
Brian Jones

The Flybye Springs, Northwest Territories, consist of 10 active vents and numerous small seeps that discharge sulphide- and barium-rich spring waters at an average temperature 8.5 °C. Oxidation of sulphide to sulphate drives precipitation of stellate and platy barite microcrystals in the proximal flow paths. Downstream, and in vent- and tributary-fed ponds, barite is precipitated among streamer and mat forming colonies of sulphur-tolerant microbes, including Thiothrix, Beggiatoa, Thioploca, Chromatium, Oscillatoria, fungi (dominantly Penicillium), and unicellular sulphate reducing bacteria. These microbes mediate barite saturation by adjusting redox gradients and via passive adsorption of barium ions to cell surfaces and extracellular polymeric substances. Passive biomineralization produces barite laminae in floating microbial mats, nanometric coatings, and micrometric encrustations around microbial cells and filaments, and local permineralization of Thiothrix, Beggiatoa, and Oscillatoria outer cell walls. Intracellular barium enrichment and (or) metabolic sulphur oxidation may be important to "active biomineralization" that produces nanometric barite globules on the tips of fungal hyphae, barite-filled cell cavities in Beggiatoa and Thiothrix, and baritized sulphur globules. Degradation of biomineralized cells generates detrital "microfossils," including barite tunnels, layered cylinders, solid cylindrical grains and chains of barite beads. The diversity of inorganic and biomineralized barite in the Flybye Springs flow path highlights the influence of ambient chemistry, microbial metabolism, and cellular structure on barite solubility and on the taphonomy of microfossils preserved in barite.


2020 ◽  
Author(s):  
Giovanna Della Porta ◽  
Joachim Reitner

ABSTRACTThe study of hydrothermal travertines contributes to the understanding of the interaction between physico-chemical processes and the role played by microbial mats and biofilms in influencing carbonate precipitation. Three active travertine sites were investigated in Central Italy to identify the types of carbonate precipitates and the associated microbial mats at varying physico-chemical parameters. Carbonate precipitated fabrics at the decimetre- to millimetre-scale and microbial mats vary with decreasing water temperature: a) at high temperature (55-44°C) calcite or aragonite crystals precipitate on microbial mats of sulphide oxidizing, sulphate reducing and anoxygenic phototrophic bacteria forming filamentous streamer fabrics, b) at intermediate temperature (44-40°C), rafts, coated gas bubbles and dendrites are associated with Spirulina cyanobacteria and other filamentous and rod-shaped cyanobacteria, c) low temperature (34-33°C) laminated crusts and oncoids in a terraced slope system are associated with diverse Oscillatoriales and Nostocales filamentous cyanobacteria, sparse Spirulina and diatoms. At the microscale, carbonate precipitates are similar in the three sites consisting of prismatic calcite (40-100 μm long, 20-40 μm wide) or acicular aragonite crystals organized in radial spherulites, overlying or embedded within biofilm EPS (Extracellular Polymeric Substances). Microsparite and sparite crystal size decreases with decreasing temperature and clotted peloidal micrite dominates at temperatures < 40°C, also encrusting filamentous microbes. Carbonates are associated with gypsum and Ca-phosphate crystals; EPS elemental composition is enriched in Si, Al, Mg, Ca, P, S and authigenic aluminium-silicates form aggregates on EPS.This study confirms that microbial communities in hydrothermal travertine settings vary as a function of temperature. Carbonate precipitate types at the microscale do not vary considerably, despite different microbial communities suggesting that travertine precipitation, driven by CO2 degassing, is influenced by biofilm EPS acting as template for crystal nucleation (EPS-mediated mineralization) and affecting the fabric types, independently from specific microbial metabolism.


Minerals ◽  
2020 ◽  
Vol 10 (3) ◽  
pp. 276
Author(s):  
Raphaël Bourillot ◽  
Emmanuelle Vennin ◽  
Christophe Dupraz ◽  
Aurélie Pace ◽  
Anneleen Foubert ◽  
...  

The Messinian microbialites of the Terminal Carbonate Complex (TCC) from the Neogene basins of southeastern Spain show both diversified morphologies and an excellent preservation of primary microbial microstructures. Their stratigraphic architecture, fabric (micro-, meso-, and macro-fabric), and mineralogical composition were investigated in eight localities from three sedimentary basins of southeastern Spain: The Sorbas and Bajo Segura basins and the Agua Amarga depression. Two recurrent microbialite associations were distinguished. Laterally linked low relief stromatolites predominated in Microbialite Association 1 (MA1), which probably formed in low energy lagoons or lakes with fluctuating normal marine to hypersaline water. The microfabrics of MA1 reflected the predominance of microbially induced/influenced precipitation of carbonates and locally (Ca)-Mg-Al silicates. Microbialite Association 2 (MA2) developed in high energy wave and tidal influenced foreshore to shoreface, in normal marine to hypersaline water. High-relief buildups surrounded by mobile sediment (e.g., ooids or pellets) dominated in this environment. MA2 microbialites showed a significant proportion of thrombolitic mesofabric. Grain-rich microfabrics indicated that trapping and binding played a significant role in their accretion, together with microbially induced/influenced carbonate precipitation. The stratigraphic distribution of MA1 and MA2 was strongly influenced by water level changes, the morphology and nature of the substratum, and exposure to waves. MA1 favorably developed in protected areas during third to fourth order early transgression and regression phases. MA2 mostly formed during the late transgressions and early regressions in high energy coastal areas, often corresponding to fossil coral reefs. Platform scale syn-sedimentary gypsum deformation and dissolution enhanced microbial carbonate production, microbialites being thicker and more extended in zones of maximum deformation/dissolution. Microbial microstructures (e.g., microbial peloids) and microfossils were preserved in the microbialites. Dolomite microspheres and filaments showed many morphological similarities with some of the cyanobacteria observed in modern open marine and hypersaline microbialites. Dolomite potentially replaced a metastable carbonate phase during early diagenesis, possibly in close relationship with extracellular polymeric substances (EPS) degradation. Double-layered microspheres locally showed an inner coating made of (Ca)-Mg-Al silicates and carbonates. This mineral coating could have formed around coccoid cyanobacteria and indicated an elevated pH in the upper part of the microbial mats and a potential dissolution of diatoms as a source of silica. Massive primary dolomite production in TCC microbialites may have resulted from enhanced sulfate reduction possibly linked to the dissolving gypsum that would have provided large amounts of sulfate-rich brines to microbial mats. Our results open new perspectives for the interpretation of ancient microbialites associated with major evaporite deposits, from microbe to carbonate platform scales.


2012 ◽  
Vol 77 (1) ◽  
pp. 104-109 ◽  
Author(s):  
P. Sargent Bray ◽  
Claudia M. Jones ◽  
Stewart J. Fallon ◽  
Jochen J. Brocks ◽  
Simon C. George

Assigning accurate dates to hypersaline sediments opens important terrestrial records of local and regional paleoecologies and paleoclimatology. However, as of yet no conventional method of dating hypersaline systems has been widely adopted. Biomarker, mineralogical, and radiocarbon analyses of sediments and organic extracts from a shallow (13 cm) core from a hypersaline playa, Lake Tyrrell, southeastern Australia, produce a coherent age-depth curve beginning with modern microbial mats and extending to ~ 7500 cal yr BP. These analyses are furthermore used to identify and constrain the timing of the most recent change in hydrological regime at Lake Tyrrell, a shift from a clay deposit to the precipitation of evaporitic sands occurring at some time between ~ 4500 and 7000 yr. These analyses show the potential for widespread dating of hypersaline systems integrating the biomarker approach, reinforce the value of the radiocarbon content of biomarkers in understanding the flow of carbon in modern ecologies, and validate the temporal dimension of data provided by biomarkers when dating late Quaternary sediments.


2020 ◽  
Author(s):  
Tomaso Bontognali ◽  
Franziska Blattmann ◽  
Zulfa Al Disi ◽  
Hamad Al Saad Al Kuwari ◽  
Zach DiLoreto ◽  
...  

&lt;p&gt;The study of early life on Earth and the search for life on Mars often includes investigations of modern analogues: natural environments that share similarities to what we hypothesize may have existed on the early Earth and early Mars. The study of modern analogues provides key information on how biosignatures are formed and preserved, which is essential for interpreting the geological record. Research conducted in recent years in various modern sabkhas located along the coast of Qatar have demonstrated that these extreme evaporitic environments represent an inspirational gold mine for the field of geobiology and astrobiology.&lt;/p&gt;&lt;p&gt;The intertidal zones of the Qatari sabkhas are typically colonized by microbial mats. Their presence leads to the formation of Microbially Influenced Sedimentary Structures (MISS). Examples of studied MISS include polygonal, domical, blistered, tufted and crinkled microbial mats. We discuss biological vs. physiochemical factors responsible for their formation, as well as their fossilization potential. These MISS often occur in a precise sequence along a transect from the lower to the upper intertidal zone. We propose that a MISS sequence represents a stronger morphological biosignature than a single MISS. The community composition of some of the studied mats revealed an uppermost layer dominated by anoxygenic phototrophs. We propose that such mats represent a particularly good analogue for studying life in the Early Archean, a time when the cyanobacteria that usually dominate the uppermost photo-oxic layer of most modern mats probably did not exist.&lt;/p&gt;&lt;p&gt;Besides influencing sediment morphology, the extracellular polymeric substances (EPS) constituting the mats serve as nucleation sites for the precipitation of authigenic minerals. Among these possible precipitates, our research focused on microbially influenced Mg-rich carbonates and Mg-rich silicates. Linking these minerals to a microbial process is of particular interest in view of the forthcoming rover missions to Mars (i.e., ExoMars and Mars 2020). Indeed, orbital spectral analyses revealed the presence of Mg-rich clays and Mg-rich carbonates in the surroundings of the proposed landing sites. It will be exciting to test the hypothesis that, on Mars, some of these minerals may have formed at low temperatures from liquid water and may, therefore, represent a target phase for the investigation of biosignatures.&lt;/p&gt;


Minerals ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 989
Author(s):  
Cédric Bougeault ◽  
Christophe Durlet ◽  
Emmanuelle Vennin ◽  
Elodie Muller ◽  
Magali Ader ◽  
...  

Laguna Pastos Grandes (Bolivia), nesting in a volcanic caldera, is a large, palustrine-to-lacustrine system fed by meteoric and hydrothermal calco–carbonic fluids. These different fluid inputs favor a complex mosaic of depositional environments, including hydrothermal springs, pools, and an ephemeral lake, producing abundant present-day carbonates developing over a Holocene carbonate crust dated by U–Th. Present-day carbonates (muds, concretions, and microbialites) recorded a large range of isotope variations, reaching 13.9‰ in δ13C and 11.1‰ in δ18O. Sedimentological and geochemical data indicated that the main processes influencing the isotope record were: (i) rapid CO2 degassing and temperature decreases along hydrothermal discharges; (ii) strong evaporation favored by the arid high-altitude Andean climate, locally enhanced by capillary water rise within microbial mats or by wind-induced spray falling on vadose concretions. Unlike past or present perennial lake systems in Central Andes, the short residence time of brine waters in the ephemeral central lake prevents enrichment of lacustrine carbonates in 13C and 18O. The very low fraction modern F14C in these present-day carbonates demonstrates that incorporation of fossil magmatic carbon related to the volcanic context also prevents any radiocarbon dating. The use of isotopes for the interpretation of ancient continental series should always be accompanied by a thorough characterization of the environmental setting.


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