scholarly journals Advection Drives Nitrate Past the Microphytobenthos in Intertidal Sands, Fueling Deeper Denitrification

2021 ◽  
Vol 12 ◽  
Author(s):  
Charles A. Schutte ◽  
Paulina Huanca-Valenzuela ◽  
Gaute Lavik ◽  
Hannah K. Marchant ◽  
Dirk de Beer
Keyword(s):  
Water Column ◽  
Pore Space ◽  
Light Availability ◽  
Primary Source ◽  
Sediment Surface ◽  
Tidal Inundation ◽  
Advective Flow ◽  
Denitrification Potential ◽  
High Concentrations ◽  
Sand Flats

Nitrification rates are low in permeable intertidal sand flats such that the water column is the primary source of nitrate to the sediment. During tidal inundation, nitrate is supplied to the pore space by advection rather than diffusion, relieving the microorganisms that reside in the sand from nitrate limitation and supporting higher denitrification rates than those observed under diffusive transport. Sand flats are also home to an abundant community of benthic photosynthetic microorganisms, the microphytobenthos (MPB). Diatoms are an important component of the MPB that can take up and store high concentrations of nitrate within their cells, giving them the potential to alter nitrate availability in the surrounding porewater. We tested whether nitrate uptake by the MPB near the sediment surface decreases its availability to denitrifiers along deeper porewater flow paths. In laboratory experiments, we used NOx (nitrate + nitrite) microbiosensors to confirm that, in the spring, net NOx consumption in the zone of MPB photosynthetic activity was stimulated by light. The maximum potential denitrification rate, measured at high spatial resolution using microsensors with acetylene and nitrate added, occurred below 1.4 cm, much deeper than light-induced NOx uptake (0.13 cm). Therefore, the shallower MPB had the potential to decrease NOx supply to the deeper sediments and limit denitrification. However, when applying a realistic downward advective flow to sediment from our study site, NOx always reached the depths of maximum denitrification potential, regardless of light availability or season. We conclude that during tidal inundation porewater advection overwhelms any influence of shallow NOx uptake by the MPB and drives water column NOx to the depths of maximum denitrification potential.

Laboratory and field measurements of HONO emissions from agricultural soils in Guangdong of China 

2021 ◽  
Author(s):  
Baobin Han ◽  
Peng Cheng ◽  
Yihang Yu ◽  
Wenda Yang ◽  
Zhilin Tian ◽  
...  
Keyword(s):  
Emission Rate ◽  
Agricultural Soils ◽  
Pore Space ◽  
Primary Source ◽  
Field Measurements ◽  
Laboratory Studies ◽  
Release Rates ◽  
Laboratory Results ◽  
Flux Measurements ◽  
Soil Flux

<p>Laboratory studies indicated that soil could produce considerable nitrous acid (HONO) emissions, which is the main primary source of hydroxyl radical (OH) in the troposphere. However, very few field observations of HONO emission from soil were reported. In order to relate laboratory results and field measurements, we measured HONO emissions from 7 representative agricultural soils (rice, vegetables, orchards, peanuts, potatoes, sugarcane and maize) in Guangdong under controlled laboratory conditions, and took flux measurements on 2 of them (rice and vegetables) by dynamic chambers in the field. Generally, release rates of HONO from the seven soils increased with temperature and varied with soil moisture, and the optimum release rates can be reached under specific values of water-filled pore space (WFPS), which is considered to be beneficial to nitrification. The seven soils' optimum release rates ranged from 1.24 to 43.19 ng kg<sup>-1</sup> s<sup>-1</sup>, and the Q<sub>10</sub> (It is defined as the multiple of the increase of soil gas emission rate when the temperature increases by 10℃) ranged from 1.03 to 2.25. Formulas were deduced from the lab results to express HONO emissions for every soil. Flux measurements on two soils varied around -1 to 4 ng N m<sup>-2</sup> s<sup>-1</sup>, and both showed similar diurnal variations with peaks around noontime and very low even negative values during nighttime. There were good correlations between HONO fluxes and soil temperature (R<sup>2</sup>=0.5). Furthermore, irrigation enhanced the HONO emission substantially. However, a large discrepancy existed between soil HONO emissions measured in lab and low HONO fluxes in field. More investigations are needed to explain the paradox.</p>

Hydrochemistry and carbonate sediment characterisation of Bacalar Lagoon, Mexican Caribbean

2019 ◽  
Vol 70 (3) ◽  
pp. 382 ◽  
Author(s):  
Nidia I. Tobón Velázquez ◽  
Mario Rebolledo Vieyra ◽  
Adina Paytan ◽  
Kyle H. Broach ◽  
Laura M. Hernández Terrones
Keyword(s):  
Trace Elements ◽  
Water Column ◽  
Saturation Index ◽  
Major Elements ◽  
Anthropogenic Sources ◽  
Pollution Indices ◽  
Mexican Caribbean ◽  
High Concentrations ◽  
Geochemical Analyses ◽  
Changes Over Time

The aim of the study is to determine the distribution of trace and major elements in the water and in the sediments of the south part of the Bacalar Lagoon and to identify the sources of the trace elements and their changes over time. The western part of the lagoon water column is characterised by high concentrations of Ca2+, HCO3– and Sr2+, derived from groundwater input. In contrast, the eastern part of the lagoon is characterised by high concentrations of Mg2+, Na+ and Cl–. The lagoon is not affected by present-day seawater intrusion. Water column and sediment geochemical analyses performed in Bacalar Lagoon show clear spatial distribution of different parameters. The saturation index of the water column indicates three main groups: (1) a zone oversaturated with regard to aragonite, calcite and dolomite; (2) an undersaturated area where all three minerals are dissolving; and (3) an area with calcite equilibrium and undersaturation with regard to the other minerals. Herein we present the first measurements of trace element (Ba2+, Mn2+, K+, Ni2+, Zn2+) concentrations in carbonates obtained from sediments in Bacalar Lagoon. In order to evaluate whether the trace elements are derived from natural or anthropogenic sources, four pollution indices were calculated. The results confirmed that Bacalar Lagoon sediments are not contaminated with Ni2+, K+, Mn2+ and Ba2+, and that the Zn2+ seems to have a predominantly anthropogenic origin.

scholarly journals Occurrence and distribution of ladderane oxidation products in different oceanic regimes

2012 ◽  
Vol 9 (7) ◽  
pp. 2407-2418 ◽  
Author(s):  
D. Rush ◽  
E. C. Hopmans ◽  
S. G. Wakeham ◽  
S. Schouten ◽  
J. S. Sinninghe Damsté
Keyword(s):  
Fatty Acids ◽  
Water Column ◽  
Arabian Sea ◽  
Degradation Products ◽  
Oxidation Products ◽  
Short Chain ◽  
Sediment Surface ◽  
Ammonium Oxidation ◽  
Anammox Activity ◽  
Sediment Matrix

Abstract. Ladderane fatty acids are commonly used as biomarkers for bacteria involved in anaerobic ammonium oxidation (anammox). These lipids have been experimentally shown to undergo aerobic microbial degradation to form short chain ladderane fatty acids. However, nothing is known of the production or the distribution of these oxic biodegradation products in the natural environment. In this study, we analysed marine water column particulate matter and sediment from three different oceanic regimes for the presence of ladderane oxidation products (C14 ladderane fatty acids) and of original ladderane fatty acids (C18 and C20 ladderane fatty acids). We found that ladderane oxidation products, i.e. C14 ladderane fatty acids, are already produced within the water column of the Arabian Sea oxygen minimum zone (OMZ) and thus only low amounts of oxygen (< 3 μM) are needed for the β-oxidation of original ladderane fatty acids to proceed. However, no short chain ladderane fatty acids were detected in the Cariaco Basin water column, where oxygen concentrations were below detection limit, suggesting that the β-oxidation pathway is inhibited by the absence of molecular oxygen, or that the microbes performing the degradation are not proliferating under these conditions. Comparison of distributions of ladderane fatty acids indicates that short chain ladderane fatty acids are mostly produced in the water column and at the sediment surface, before being preserved deeper in the sediments. Short chain ladderane fatty acids were abundant in Arabian Sea and Peru Margin sediments (ODP Leg 201), often in higher concentrations than the original ladderane fatty acids. In a sediment core taken from within the Arabian Sea OMZ, short chain ladderanes made up more than 90% of the total ladderanes at depths greater than 5 cm below sea floor. We also found short chain ladderanes in higher concentrations in hydrolysed sediment residues compared to those freely occurring in lipid extracts, suggesting that they had become bound to the sediment matrix. Furthermore, these matrix-bound short chain ladderanes were found at greater sediment depths than short chain ladderanes in the lipid extract, suggesting that binding to the sediment matrix aids the preservation of these lipids. Though sedimentary degradation of short chain ladderane fatty acids did occur, it appeared to be at a slower rate than that of the original ladderane fatty acids, and short chain ladderane fatty acids were found in sediments from the Late Pleistocene (~ 100 kyr). Together these results suggest that the oxic degradation products of ladderane fatty acids may be suitable biomarkers for past anammox activity in OMZs.

scholarly journals Artificially induced migration of redox layers in a coastal sediment from the Northern Adriatic

2014 ◽  
Vol 11 (8) ◽  
pp. 2211-2224 ◽  
Author(s):  
E. Metzger ◽  
D. Langlet ◽  
E. Viollier ◽  
N. Koron ◽  
B. Riedel ◽  
...  
Keyword(s):  
Water Column ◽  
Experimental Studies ◽  
Geochemical Evolution ◽  
Sediment Surface ◽  
Pore Waters ◽  
In Situ Experiment ◽  
Solid Oxides ◽  
Northern Adriatic ◽  
Entire Height ◽  
Benthic Chambers

Abstract. Long-term experimental studies suggest that, under transient anoxic conditions, redox fronts within the sediment shift upwards, causing sequential rise and fall of benthic fluxes of reduced species (Mn(II), Fe(II) and S(-II)). Infaunal benthic organisms are associated with different redox fronts as micro-habitats and must be affected by such changes during natural hypoxia events. In order to document the geochemical evolution of the sediment during prolonged anoxia in the framework of an in situ experiment designed to mimic natural conditions, benthic chambers were deployed on the seafloor of the Northern Adriatic and sampled after 9, 30 and 315 days of incubation. Oxygen and sulfide were measured continuously in the early stages (9 days) of the experiment. High-resolution pore water profiles were sampled by DET probes and redox-sensitive species (S(VI), Mn(II) and Fe(II)) and alkalinity were measured. Starting oxygen saturation was about 80% within the chamber. After 7 days, anoxia was established in the bottom waters within the chambers. Mn(II) and Fe(II) started diffusing towards the anoxic water column until they reached the surficial sediment. Being reoxidized there, Mn and Fe reprecipitated, giving a rusty coloration to the seafloor. Infaunal species appeared at the sediment surface. After 20 days, all macro-organisms were dead. Decomposition of macro-organisms at the sediment–water interface generated S(-II) within the entire height of the chamber, leading to a downward flux of sulfides into the sediment, where they were quickly oxidized by metallic oxides or precipitated as FeS. S(-II) was below detection in the water column and pore waters at the end of the experiment. Our results suggest that S(-II) enrichment in the water column of coastal systems, which are episodically anoxic, is strongly controlled by the biomass of benthic macrofauna and its decay during anoxia, whereas its residence time in the water column is controlled by iron availability (as solid oxides or as dissolved reduced cations) within the sediment, even without water circulation.

Protozoa abundance, growth, and bacterivory in the water column, on sedimenting particles, and in the sediment of Halifax Harbor

1990 ◽  
Vol 36 (12) ◽  
pp. 859-863 ◽  
Author(s):  
James A. Novitsky
Keyword(s):  
Bacterial Community ◽  
Water Column ◽  
Sediment Surface ◽  
Metabolic Inhibitor ◽  
Optimum Conditions ◽  
Bacterial Populations ◽  
Protozoan Grazing ◽  
Large Numbers ◽  
Doubling Times

The role of protozoan grazing in controlling bacterial populations was examined in four microbial habitats in Halifax Harbor, Canada: the water column, setting particles, the sediment–water interface, and the sediment. Large numbers of protozoans were found in all habitats although most (>56%) were small (<5 μm) flagellates. Protozoans larger than 10 μm were rarely observed; protozoans >20 μm were never observed. Protozoans were also observed to a depth of 9 cm below the sediment surface although efforts to culture viable protozoa failed except for the top 1 cm. The use of the metabolic inhibitor cycloheximide with and without colchicine to selectively inhibit eucaryotic metabolism was shown to severely affect procaryotic metabolism in sediment (and presumably particle and water) samples. Using fluorescently labelled bacteria as food, and under optimum conditions, up to 42% of the Protozoa population exhibited active grazing within 7 h. Using protozoan and bacterial community sizes and doubling times, it was calculated that each protozoan in Halifax Harbor would have to consume 13–118 bacteria per hour for the enumerated nanoplanktonic (<20 μm) Protozoa to be the sole control of the size of the bacterial community. Key words: marine, Protozoa, bacterivory, particles, bacteria.

scholarly journals Short-term variability in the sedimentary BIT index of Lake Challa, East Africa over the past 2200 years: validating the precipitation proxy

2015 ◽  
Vol 11 (2) ◽  
pp. 1177-1218 ◽  
Author(s):  
L. K. Buckles ◽  
J. W. H. Weijers ◽  
D. Verschuren ◽  
C. Cocquyt ◽  
J. S. Sinninghe Damsté
Keyword(s):  
Soil Erosion ◽  
Water Column ◽  
Surface Sediments ◽  
Austral Summer ◽  
Primary Source ◽  
Monsoon Precipitation ◽  
The Past ◽  
Rain Season ◽  
Index Variation ◽  
Large Diatom

Abstract. The branched vs. isoprenoid index of tetraethers (BIT index) in Lake Challa sediments has been applied as a monsoon precipitation proxy on the assumption that the primary source of branched tetraether lipids (brGDGTs) was soil washed in from the lake's catchment. However, water column production has since been identified as the primary source of brGDGTs in Lake Challa, meaning that there is no longer a clear mechanism linking BIT index variation and precipitation. Here we investigate BIT index variation and GDGT concentrations at a decadal resolution over the past 2200 years, in combination with GDGT data from profundal surface sediments and 45 months of sediment-trap deployment. The 2200 year record reveals high-frequency variability in GDGT concentrations, and therefore the BIT index. Also surface sediments collected in January 2010 show a distinct shift in GDGT composition relative to those collected in August 2007. Increased bulk flux of settling particles with high Ti / Al ratios during March–April 2008 reflect an event of high detrital input to Lake Challa, concurrent with intense precipitation at the onset of the principal rain season that year. Although brGDGT distributions in the settling material are initially unaffected, this soil erosion event is succeeded by a large diatom bloom in July–August 2008 and a concurrent increase in GDGT-0 fluxes. Near-zero crenarchaeol fluxes indicate that no thaumarchaeotal bloom developed during the subsequent austral summer season; instead a peak in brGDGT fluxes is observed in December 2008. We suggest that increased nutrient availability, derived from eroded soil washed into the lake, stimulated both diatom productivity and the GDGT-0 producing archaea which help decompose dead diatoms passing through the suboxic zone of the water column. This disadvantaged the Thaumarchaeota that normally prosper during the following austral summer. Instead, a bloom of supposedly heterotrophic brGDGT-producing bacteria occurred. Episodic recurrence of such high soil-erosion events, integrated over multi-decadal and longer timescales and possibly enhanced by other mechanisms generating low BIT index values in dry years, can explain the positive relationship between the sedimentary BIT index and monsoon precipitation at Lake Challa. However, application elsewhere requires ascertaining the local situation of lacustrine brGDGT production and of variables affecting the productivity of Thaumarchaeota.

scholarly journals Water Column Optical Properties of Pacific Coral Reefs Across Geomorphic Zones and in Comparison to Offshore Waters

2019 ◽  
Vol 11 (15) ◽  
pp. 1757 ◽  
Author(s):  
Russell ◽  
Dierssen ◽  
Hochberg
Keyword(s):  
Optical Properties ◽  
Coral Reefs ◽  
Water Column ◽  
Light Availability ◽  
Optical Measurements ◽  
Fringing Reefs ◽  
Tropical Conditions ◽  
Local Measurements ◽  
High Degree ◽  
Significant Underestimation

Despite the traditional view of coral reefs occurring in oligotrophic tropical conditions, water optical properties over coral reefs differ substantially from nearby clear oceanic waters. Through an extensive set of optical measurements across the tropical Pacific, our results suggest that coral reefs themselves exert a high degree of influence over water column optics, primarily through release of colored dissolved organic matter (CDOM). The relative contributions of phytoplankton, non-algal particles, and CDOM were estimated from measurements of absorption and scattering across different geomorphic shallow-water reef zones (<10 m) in Hawaii, the Great Barrier Reef, Guam, and Palau (n = 172). Absorption was dominated at the majority of stations by CDOM, with mixtures of phytoplankton and CDOM more prevalent at the protected back reef and lagoon zones. Absorption could be dominated by sediments and phytoplankton at fringing reefs and terrestrially impacted sites where particulate backscattering was significantly higher than in the other zones. Scattering at three angles in the backward direction followed recent measurements of the particulate phase function. Optical properties derived from satellite imagery indicate that offshore waters are consistently lower in absorption and backscattering than reef waters. Therefore, the use of satellite-derived offshore parameters in modeling reef optics could lead to significant underestimation of absorption and scattering, and overestimation of benthic light availability. If local measurements are not available, average optical properties based on the general reef zone could provide a more accurate means of assessing light conditions on coral reefs than using offshore water as a proxy.

scholarly journals Concentrations and Loads of Dissolved and Particulate Organic Carbon in Urban Stormwater Runoff

Water ◽  
2020 ◽  
Vol 12 (4) ◽  
pp. 1031 ◽  
Author(s):  
Stefan Kalev ◽  
Gurpal S. Toor
Keyword(s):  
Organic Carbon ◽  
Stormwater Runoff ◽  
Light Availability ◽  
Rain Gauge ◽  
Urban Landscapes ◽  
Storm Events ◽  
Wet Season ◽  
The Difference ◽  
Urban Stormwater Runoff ◽  
High Concentrations

Urban landscapes are significant contributors of organic carbon (OC) in receiving waters, where elevated levels of OC limit the light availability, increase the transport of pollutants, and result in high costs of potable water treatment. Our objective in this study was to investigate the concentrations, fractions (dissolved and particulate), and loads of OC in a residential catchment (3.89 ha drainage area) located in Florida, United States. The outlet of the stormwater pipe draining the residential catchment was instrumented with an automated sampler, a flowmeter, and a rain gauge. The rainfall and runoff samples collected over 25 storm events during the 2016 wet season (June to September) were analyzed for dissolved organic carbon (DOC) and total organic carbon (TOC), with particulate OC (POC) calculated as the difference between TOC and DOC. Mean concentration of DOC was 2.3 ± 1.7 mg L−1 and POC was 0.3 ± 0.3 mg L−1 in the rainfall, whereas DOC was 10.5 ± 6.20 mg L−1 and POC was 2.00 ± 4.05 mg L−1 in the stormwater runoff. Concentrations of DOC were higher during the rising limb of the hydrograph in 15 out of 25 storm events, suggesting flushing of DOC, with an increase in the amount of runoff, from the landscape sources in the residential catchment. The estimated total export of OC during the 2016 wet season was 66.0 kg ha−1, of which DOC was 56.9 kg ha−1 (86.2% of TOC), and POC was 9.1 kg ha−1 (13.8% of TOC). High concentrations and loads of OC, especially DOC, in the stormwater runoff imply that residential catchments in urban watersheds are hot-spots of DOC influx to water bodies. Reducing DOC transport in the urban landscapes is complex and require identifying the origin of DOC and then using site-specific targeted approaches to mitigate DOC loss.

Summer–winter transitions in Antarctic ponds: III. Chemical changes

2011 ◽  
Vol 24 (2) ◽  
pp. 121-130 ◽  
Author(s):  
Jenny Webster-Brown ◽  
Ian Hawes ◽  
Karl Safi ◽  
Brian Sorrell ◽  
Nathaniel Wilson
Keyword(s):  
Trace Elements ◽  
Water Column ◽  
Ice Shelf ◽  
Toxic Trace Elements ◽  
Mineral Phases ◽  
Show Evidence ◽  
Speciation Modelling ◽  
Geochemical Speciation ◽  
Inorganic Solutes ◽  
High Concentrations

AbstractObservations were made of water column chemistry in four Na-Cl dominated ponds on the McMurdo Ice Shelf from the end of January to early April in 2008. During that time the ponds went from ice-free to predominantly frozen, with only a small volume of residual hypoxic, saline liquid trapped at the base of each pond. Changes in the concentrations of inorganic solutes with time distinguished Na, Cl, Mg, K, SO4, As, U and Mn as ions and trace elements that behave mainly conservatively during freezing, from those which are affected by biological processes (removing HCO3) and the precipitation of mineral phases such as calcite (removing Ca and more HCO3). Dissolved Fe, Mo, Cu and Zn also show evidence of precipitation from the water column during freezing; geochemical speciation modelling predicts the formation of stable insoluble mineral phases such as Fe oxides and oxyhydroxides while conditions are oxic, and Fe-, Cu-, Mo- and Zn-sulphide minerals in the presence of H2S. Consequently, under winter conditions, residual liquid beneath the ice in such ponds is anticipated to be an anoxic Na-Cl brine with the capacity to develop high concentrations of toxic trace elements such as As and U.

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