scholarly journals Enzymatic Bioprospecting of Fungi Isolated from a Tropical Rainforest in Mexico

2021 ◽  
Vol 8 (1) ◽  
pp. 22
Author(s):  
Karla Peraza-Jiménez ◽  
Susana De la Rosa-García ◽  
José Javier Huijara-Vasconselos ◽  
Manuela Reyes-Estebanez ◽  
Sergio Gómez-Cornelio
Keyword(s):  
Organic Matter ◽  
Leaf Litter ◽  
Tropical Rainforest ◽  
Laccase Activity ◽  
Tropical Environment ◽  
Tropical Rainforests ◽  
Biotechnological Applications ◽  
Fusarium Spp ◽  
Daedalea Flavida ◽  
High Diversity

The humid tropical environment provides an ideal place for developing a high diversity of plants; this is why it is an interesting site for the enzymatic bioprospecting of fungi that are responsible for the recycling of organic matter in an efficient and accelerated way and whose enzymes could have multiple biotechnological applications. For this study, 1250 isolates of macroscopic and microscopic fungal morphotypes were collected from soil, leaf litter, and wood. One hundred and fifty strains (50 from each source) were selected for the enzymatic screening. From the first phase, 51 strains with positive activity for laccase, protease, amylase, xylanase, and lipase enzymes were evaluated, of which 20 were isolated from leaf litter, 18 from the soil, and 13 from wood. The 10 best strains were selected for the enzymatic quantification, considering the potency index and the production of at least two enzymes. High laccase activity was detected for Trametes villosa FE35 and Marasmius sp. CE25 (1179 and 710.66 U/mg, respectively), while Daedalea flavida PE47 showed laccase (521.85 U/mg) and protease activities (80.66 U/mg). Fusarium spp. PH79 and FS400 strains had amylase (14.0 U/mg, 49.23 U/mg) and xylanase activities (40.05 U/mg, 36.03 U/mg) respectively. These results confirm the enzymatic potential of fungi that inhabit little-explored tropical rainforests with applications in industry.

scholarly journals Biodiversity hanging by a thread: the importance of fungal litter-trapping systems in tropical rainforests

2011 ◽  
Vol 8 (3) ◽  
pp. 397-400 ◽  
Author(s):  
Jake L. Snaddon ◽  
Edgar C. Turner ◽  
Tom M. Fayle ◽  
Chey V. Khen ◽  
Paul Eggleton ◽  
...  
Keyword(s):  
Species Richness ◽  
Leaf Litter ◽  
Plant Diversity ◽  
Habitat Complexity ◽  
Tropical Rainforests ◽  
Dramatic Reduction ◽  
Experimental Removal ◽  
Crucial Component ◽  
High Species Richness ◽  
Vital Resource

The exceptionally high species richness of arthropods in tropical rainforests hinges on the complexity of the forest itself: that is, on features such as the high plant diversity, the layered nature of the canopy and the abundance and the diversity of epiphytes and litter. We here report on one important, but almost completely neglected, piece of this complex jigsaw—the intricate network of rhizomorph-forming fungi that ramify through the vegetation of the lower canopy and intercept falling leaf litter. We show that this litter-trapping network is abundant and intercepts substantial amounts of litter (257.3 kg ha −1 ): this exceeds the amount of material recorded in any other rainforest litter-trapping system. Experimental removal of this fungal network resulted in a dramatic reduction in both the abundance (decreased by 70.2 ± 4.1%) and morphospecies richness (decreased by 57.4 ± 5.1%) of arthropods. Since the lower canopy levels can contain the highest densities of arthropods, the proportion of the rainforest fauna dependent on the fungal networks is likely to be substantial. Fungal litter-trapping systems are therefore a crucial component of habitat complexity, providing a vital resource that contributes significantly to rainforest biodiversity.

scholarly journals Isolation, identification and functional characterization of cultivable bacteria from Arabian Sea and Bay of Bengal water samples reveals high diversity

2020 ◽  
Author(s):  
Shriram N. Rajpathak ◽  
Yugandhara M. Patil ◽  
Roumik Banerjee ◽  
Asmita M. Khedkar ◽  
Pawan G. Mishra ◽  
...  
Keyword(s):  
Organic Matter ◽  
Bay Of Bengal ◽  
Arabian Sea ◽  
Functional Characterization ◽  
Culturable Bacteria ◽  
Carbohydrate Utilization ◽  
Cultivable Bacteria ◽  
High Diversity ◽  
Oxygen Minimum

AbstractThe oxygen minimum zone of the Arabian Sea (AS) and Bay of Bengal (BOB) is rich in organic matter and is an unusual niche. Bacteria present in the oceanic water play an important role in ecology since they are responsible for decomposing, mineralizing of organic matter and in elemental cycling like nitrogen, sulfur, phosphate. This study focuses on culturing bacteria from oxygen minimum zones (OMZ) and non-OMZ regions and their phylogenetic as well as the functional characterization. Genotypic characterization of the isolates using amplified rDNA based 16SrRNA sequencing grouped them into various phylogenetic groups such as alpha-proteobacteria, gamma-proteobacteria and unaffiliated bacteria. The cultivable bacterial assemblages encountered belonged to the genus Halomonas, Marinobacter, Idiomarina, Pshyctobacter and Pseudoalteromonas. Among the enzymatic activities, carbohydrate utilization activity was most predominant (100%) and microorganisms possessed amylase, cellulase, xylanase and chitinase. A large proportion of these bacteria (60%) were observed to be hydrocarbon consuming and many were resistant to ampicillin, chloramphenicol, kanamycin and streptomycin. The high diversity and high percentage of extracellular hydrolytic enzyme activities along with hydrocarbon degradation activity of the culturable bacteria reflects their important ecological role in oceanic biogeochemical cycling. Further assessment confirmed the presence of nitrogen reduction capability in these cultivable bacteria which highlights their importance in oceanic geochemical cycling.

scholarly journals Reactivation of nutrient cycling in an urban tropical dry forest after abandonment of agricultural activities

2021 ◽  
Vol 27 (3) ◽  
pp. 355-365
Author(s):  
Juan D. León-Peláez ◽  
◽  
William Caicedo-Ruiz ◽  
Jeiner Castellanos-Barliza ◽  
◽  
...  
Keyword(s):  
Organic Matter ◽  
Leaf Litter ◽  
Residence Time ◽  
Mean Residence Time ◽  
Dry Forest ◽  
Agricultural Activities ◽  
Forest Fragment ◽  
Leaf Litterfall ◽  
Passive Restoration ◽  
Standing Litter

Introduction: Standing leaf litter represent an essential source of organic matter and nutrients to dynamize biogeochemical processes at the ecosystem level. Objectives: To characterize the accumulation and decomposition of organic materials and flow of nutrients from standing litter in an urban dry tropical forest in a successional stage, after 10 years of abandonment of agricultural activities, and to determine the potential use of three species in future active restoration activities. Materials and methods: Standing litter samples were collected from a forest fragment in Santa Marta, Colombia, separating leaves, reproductive material, woody material and other residues. Additionally, leaves of three species of interest for ecological restoration (Albizia niopoides Spruce ex Benth., Cordia alba [Jacq.] Roem. & Schult. and Machaerium milleflorum Dugand G. A.) were separated and Ca, Mg, K, N and P concentrations were determined. Results and discussion: Total standing litter was 8.3 Mg∙ha-1 with a mean residence time of two years. The leaves represented 20% of the standing litter, with a mean residence time of 1.4 years. Based on the decomposition constant (kj = 0.73) and the rate of leaf litterfall, organic matter returns accounted for 3.4 Mg∙ha-1∙year-1. Leaf decomposition rate decreased in the following order C. alba > M. milleflorum > A. niopoides. P represented the greatest limitation with low release rates (0.1 to 1.2 kg∙ha-1∙year-1). Conclusions: The passive restoration strategy allowed reactivation of biogeochemical cycle via fine leaf litter. Cordia alba showed potential for inclusion in restoration activities, with lower values for leaf N/P ratio, and higher rates for leaf litterfall, litter decomposition and nutrient release.

scholarly journals Contributions of organic matter and nutrients via leaf litter in an urban tropical dry forest fragment

2018 ◽  
Vol 66 (2) ◽  
pp. 571 ◽  
Author(s):  
Jeiner Castellanos-Barliza ◽  
Juan Diego León-Peláez ◽  
Rosalba Armenta-Martínez ◽  
Willinton Barranco-Pérez ◽  
William Caicedo-Ruíz
Keyword(s):  
Organic Matter ◽  
Leaf Litter ◽  
Tropical Dry Forest ◽  
Soil Surface ◽  
Dry Forest ◽  
Litter Production ◽  
Forest Fragment ◽  
Litter Bags ◽  
One Year ◽  
Degraded Ecosystems

The litterfall and decomposition represent the main transfer of organic matter and nutrients from the vegetation to the soil surface and determine positive trajectories in the process of rehabilitating and restoring degraded ecosystems. The aim of this study was to evaluate the contributions of organic materials and nutrients through the characterization of fine litter in an urban dry forest fragment. Litter production was monitored for one year by collecting 29 traps (0.5 m2). To evaluate leaf nutrient resorption, green leaves were collected from 5-10 individuals that represented the dominant tree species. Litter-bags (20 x 20 cm, 2 mm pore) were used for six months to evaluate the decomposition of leaf litter. Annual fine litter production was found to be 8 574 kg ha-1, with the Cordia alba species contributing the most leaf litter (1 134 kg ha-1) and nutrients (N: 6.16; P: 0.21; Ca: 4.72; Mg: 0.47; K: 1.27 kg ha-1). Decomposition rates (k constant) followed the decreasing order: C. alba (k: 4.6) > Machaerium milleflorum (k: 3.5). M. milleflorum and Albizia niopoides presented a pattern of rapid N and P release in the first 30 days, with more than 80 % and 60 % released from M. milleflorum and C. alba, respectively, by the end of the experiment. The litterfall monitoring carried out in this urban dry forest fragment revealed some important aspects of the functioning of an ecosystem as seriously threatened as the tropical dry forest. Rev. Biol. Trop. 66(2): 571-585. Epub 2018 June 01. 

Stabilisation of soil organic matter in invertebrate faecal pellets through leaf litter grazing

2007 ◽  
Vol 39 (5) ◽  
pp. 1202-1205 ◽  
Author(s):  
Andrew J. Rawlins ◽  
Ian D. Bull ◽  
Philip Ineson ◽  
Richard P. Evershed
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Leaf Litter ◽  
Faecal Pellets

scholarly journals In situ measurements of isoprene and monoterpenes within a south-east Asian tropical rainforest

2011 ◽  
Vol 11 (14) ◽  
pp. 6971-6984 ◽  
Author(s):  
C. E. Jones ◽  
J. R. Hopkins ◽  
A. C. Lewis
Keyword(s):  
Tropical Rainforest ◽  
East Asian ◽  
Ground Level ◽  
Ambient Air ◽  
Tropical Rainforests ◽  
Light Conditions ◽  
Mixing Ratios ◽  
Volatile Carbon ◽  
Malaysian Borneo

Abstract. Biogenic volatile organic compounds (BVOCs) emitted from tropical rainforests comprise a substantial fraction of global atmospheric VOC emissions, however there are only relatively limited measurements of these species in tropical rainforest regions. We present observations of isoprene, α-pinene, camphene, Δ-3-carene, γ-terpinene and limonene, as well as oxygenated VOCs (OVOCs) of biogenic origin such as methacrolein, in ambient air above a tropical rainforest in Malaysian Borneo during the Oxidant and Particle Photochemical Processes above a south-east Asian tropical rainforest (OP3) project in 2008. Daytime composition was dominated by isoprene, with an average mixing ratio of the order of ~1 ppb. γ-terpinene, limonene and camphene were the most abundant monoterpenes, with average daytime mixing ratios of 102, 71 and 66 ppt respectively, and with an average monoterpene toisoprene ratio of 0.3 during sunlit hours, compared to 2.0 at night. Limonene and camphene abundances were seen to be related to both temperature and light conditions. In contrast, γ-terpinene emission continued into the late afternoon/evening, under relatively low temperature and light conditions. The contributions of isoprene, monoterpenes and other classes of VOC to the volatile carbon budget and OH reactivity have been summarised for this rainforest location. We observe good agreement between surface and aircraft measurements of boundary layer isoprene and methacrolein above the natural rainforest, suggesting that the ground-level observations are broadly representative of isoprene emissions from this region.

Influence of Habitat Fragmentation on the Genetic Variability in Leaf Litter Ant Populations in Tropical Rainforests of Sabah, Borneo

2006 ◽  
Vol 15 (1) ◽  
pp. 157-175 ◽  
Author(s):  
Tobias O. Bickel ◽  
Carsten A. Brühl ◽  
Jürgen R. Gadau ◽  
Bert Hölldobler ◽  
K. Eduard Linsenmair
Keyword(s):  
Habitat Fragmentation ◽  
Genetic Variability ◽  
Leaf Litter ◽  
Tropical Rainforests

Soil organic matter as affected by the conversion of natural tropical rainforest to monoculture rubber plantations under acric ferralsols

CATENA ◽  
2020 ◽  
Vol 195 ◽  
pp. 104753
Author(s):  
D. Balasubramanian ◽  
Yi-Ping Zhang ◽  
John Grace ◽  
Li-Qing Sha ◽  
Yanqiang Jin ◽  
...  
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Tropical Rainforest ◽  
Rubber Plantations

scholarly journals Detrital Subsidies in the Diet of Mytilus edulis; Macroalgal Detritus Likely Supplements Essential Fatty Acids

2020 ◽  
Vol 7 ◽  
Author(s):  
Adrianus Both ◽  
Carrie J. Byron ◽  
Barry Costa-Pierce ◽  
Christopher C. Parrish ◽  
Damian C. Brady
Keyword(s):  
Organic Matter ◽  
Mytilus Edulis ◽  
Leaf Litter ◽  
Spartina Alterniflora ◽  
Essential Fatty Acids ◽  
Vascular Plant ◽  
Saccharina Latissima ◽  
Detrital Material ◽  
Abundant Phytoplankton ◽  
Pennate Diatoms

Detritus is a frequent, poorly defined, component of bivalve growth and carrying capacity models. The purpose of this study was to determine the proportional contributions of detrital material derived from primary producers (phytoplankton, macroalgae, Spartina alterniflora, and terrestrial leaf litter) to particulate organic matter (POM) and blue mussel’s (Mytilus edulis) diet within a temperate bay (Saco Bay, ME, United States). We assessed which detrital sources, if any, warranted incorporation into modeling efforts. Stable isotopes (δ13C and δ15N) and fatty acid biomarkers (FA) of mussels, size fractionated (<100 μm) POM, and primary producer endmembers (phytoplankton, Saccharina latissima, Ascophyllum nodosum, Chondrus crispus, Spartina alterniflora and leaf litter) collected between 2016 and 2017 were used to estimate endmember contributions to POM and mussel diets. Based on FAs dinoflagellates were the most abundant phytoplankton in Saco Bay, even during the fall diatom bloom. Diatoms within the bay were primarily centric, but pennate diatoms were at times present in the water column (e.g., in September). Following abundances of dinoflagellates, and centric and pennate diatoms, 22:6ω3 (DHA) was the most abundant essential FA (8.6 ± 0.1% total FAs), followed by 20:5ω3 (EPA: 7.0 ± 0.1%) and 20:4ω6 (ARA: 0.3 ± 0.1%). On average, phytoplankton derived organic matter contributed 22.1 ± 0.3% of the total POM in the bay. The concentration of non-fresh phytoplankton organic matter, or remaining organic matter (REMORG), was positively correlated with all endmember biomarkers. However, the proportion (%) of vascular plant, macroalgal, and detrital FAs was negatively correlated with the concentration of REMORG. This finding suggests in periods of low productivity, vascular plant and macroalgal detritus are proportionally more important contributors to POM. Mussels were broad spectrum omnivores, consuming phytoplankton, zooplankton, and detrital material. Detrital contributions to mussel diets were important (minimum of 16% of diet). Although small, macroalgae’s dietary contribution (8%) to M. edulis may be important. Macroalgal detritus contained essential FAs (20:5ω3 and 20:4ω6) that could supplement mussel diets, as M. edulis in Saco Bay were likely limited by 20:5ω3. Consideration of how macroalgal detritus affects the availability of essential FAs in POM may be useful to incorporate into aquaculture site selection.

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