scholarly journals Parallel One-Step Control of Parametrised Boolean Networks

Mathematics ◽  
2021 ◽  
Vol 9 (5) ◽  
pp. 560 ◽  
Author(s):  
Luboš Brim ◽  
Samuel Pastva ◽  
David Šafránek ◽  
Eva Šmijáková
Keyword(s):  
Control Problem ◽  
Boolean Networks ◽  
Actual State ◽  
Worst Case ◽  
Symbolic Data ◽  
One Step ◽  
The One ◽  
Step Control ◽  
Symbolic Algorithm ◽  
Naive Approach

Boolean network (BN) is a simple model widely used to study complex dynamic behaviour of biological systems. Nonetheless, it might be difficult to gather enough data to precisely capture the behavior of a biological system into a set of Boolean functions. These issues can be dealt with to some extent using parametrised Boolean networks (ParBNs), as this model allows leaving some update functions unspecified. In our work, we attack the control problem for ParBNs with asynchronous semantics. While there is an extensive work on controlling BNs without parameters, the problem of control for ParBNs has not been in fact addressed yet. The goal of control is to ensure the stabilisation of a system in a given state using as few interventions as possible. There are many ways to control BN dynamics. Here, we consider the one-step approach in which the system is instantaneously perturbed out of its actual state. A naïve approach to handle control of ParBNs is using parameter scan and solve the control problem for each parameter valuation separately using known techniques for non-parametrised BNs. This approach is however highly inefficient as the parameter space of ParBNs grows doubly exponentially in the worst case. We propose a novel semi-symbolic algorithm for the one-step control problem of ParBNs, that builds on symbolic data structures to avoid scanning individual parameters. We evaluate the performance of our approach on real biological models.

A Study on the Rearrangement of Dialkyl 1-Aryl-1-hydroxymethylphosphonates to Benzyl Phosphates

2020 ◽  
Vol 24 (4) ◽  
pp. 465-471 ◽  
Author(s):  
Zita Rádai ◽  
Réka Szabó ◽  
Áron Szigetvári ◽  
Nóra Zsuzsa Kiss ◽  
Zoltán Mucsi ◽  
...  
Keyword(s):  
Quantum Chemical ◽  
Room Temperature ◽  
Phase Transfer ◽  
One Pot ◽  
Substrate Dependence ◽  
Triethylbenzylammonium Chloride ◽  
One Step ◽  
The Pudovik Reaction ◽  
The One ◽  
Solid Liquid

The phospha-Brook rearrangement of dialkyl 1-aryl-1-hydroxymethylphosphonates (HPs) to the corresponding benzyl phosphates (BPs) has been elaborated under solid-liquid phase transfer catalytic conditions. The best procedure involved the use of triethylbenzylammonium chloride as the catalyst and Cs2CO3 as the base in acetonitrile as the solvent at room temperature. The substrate dependence of the rearrangement has been studied, and the mechanism of the transformation under discussion was explored by quantum chemical calculations. The key intermediate is an oxaphosphirane. The one-pot version starting with the Pudovik reaction has also been developed. The conditions of this tandem transformation were the same, as those for the one-step HP→BP conversion.

scholarly journals One-Year Clinical Evaluation of the Bonding Effectiveness of a One-Step, Self-Etch Adhesive in Noncarious Cervical Lesion Therapy

2015 ◽  
Vol 2015 ◽  
pp. 1-5 ◽  
Author(s):  
Babacar Faye ◽  
Mouhamed Sarr ◽  
Khaly Bane ◽  
Adjaratou Wakha Aidara ◽  
Seydina Ousmane Niang ◽  
...  
Keyword(s):  
Clinical Performance ◽  
Retention Rate ◽  
Recall Rate ◽  
Acid Etching ◽  
Significant Difference ◽  
Usphs Criteria ◽  
One Step ◽  
One Year ◽  
The One ◽  
Self Etch

This study evaluated the one-year clinical performance of a one-step, self-etch adhesive (Optibond All-in-One, Kerr, CA, USA) combined with a composite (Herculite XRV Ultra, Kerr Hawe, CA, USA) to restore NCCLs with or without prior acid etching. Restorations performed by the same practitioner were evaluated at baseline and after 3, 6, and 12 months using modified USPHS criteria. At 6 months, the recall rate was 100%. The retention rate was 84.2% for restorations with prior acid etching, but statistically significant differences were observed between baseline and 6 months. Without acid etching, the retention rate was 77%, and no statistically significant difference was noted between 3 and 6 months. Marginal integrity (93.7% with and 87.7% without acid etching) and discoloration (95.3% with and 92.9% without acid etching) were scored as Alpha or Bravo, with better results after acid etching. After one year, the recall rate was 58.06%. Loss of pulp vitality, postoperative sensitivity, or secondary caries were not observed. After one year retention rate was of 90.6% and 76.9% with and without acid conditioning. Optibond All-in-One performs at a satisfactory clinical performance level for restoration of NCCLs after 12 months especially after acid etching.

scholarly journals Building up cyclodextrins from scratch – templated enzymatic synthesis of cyclodextrins directly from maltose

2021 ◽  
Author(s):  
Dennis Larsen ◽  
Sophie R. Beeren
Keyword(s):  
Enzymatic Synthesis ◽  
Combinatorial Libraries ◽  
One Step ◽  
The One ◽  
Kinetic Trapping

Template-induced kinetic trapping of specific cyclodextrins in enzyme-mediated dynamic combinatorial libraries of linear and cyclic α-glucans enables the one-step synthesis of cyclodextrins from maltose in water.

scholarly journals Efficient Cryopreservation of Populus tremula by In Vitro-Grown Axillary Buds and Genetic Stability of Recovered Plants

Plants ◽  
2021 ◽  
Vol 10 (1) ◽  
pp. 77
Author(s):  
Elena O. Vidyagina ◽  
Nikolay N. Kharchenko ◽  
Konstantin A. Shestibratov
Keyword(s):  
Survival Rate ◽  
Axillary Buds ◽  
Long Term Storage ◽  
Average Survival ◽  
Transgenic Lines ◽  
Ssr Loci ◽  
One Step ◽  
The One

Axillary buds of in vitro microshoots were successfully frozen at –196 °C by the one-step freezing method using the protective vitrification solution 2 (PVS2). Microshoots were taken from 11 transgenic lines and three wild type lines. Influence of different explant pretreatments were analyzed from the point of their influence towards recovery after cryopreservation. It was found out that the use of axillary buds as explants after removal of the apical one increases recovery on average by 8%. The cultivation on growth medium of higher density insignificantly raises the regenerants survival rate. Pretreatment of the osmotic fluid (OF) shows the greatest influence on the survival rate. It leads to the increase in survival rate by 20%. The cryopreservation technology providing regenerants average survival rate of 83% was developed. It was based on the experimental results obtained with explant pretreatment. Incubation time in liquid nitrogen did not affect the explants survival rate after thawing. After six months cryostorage of samples their genetic variability was analyzed. Six variable simple sequence repeat (SSR) loci were used to analyze genotype variability after the freezing-thawing procedure. The microsatellite analysis showed the genetic status identity of plants after cryopreservation and of the original genotypes. The presence of the recombinant gene in the transgenic lines after cryostorage were confirmed so as the interclonal variation in the growth rate under greenhouse conditions. The developed technique is recommended for long-term storage of various breeding and genetically modified lines of aspen plants, as it provides a high percentage of explants survival with no changes in genotype.

scholarly journals Understanding mathematics of Grover’s algorithm

2021 ◽  
Vol 20 (5) ◽  
Author(s):  
Paweł J. Szabłowski
Keyword(s):  
Phase Change ◽  
Unitary Operator ◽  
Mathematical Structure ◽  
Complex Numbers ◽  
Unitary Operators ◽  
Grover’S Algorithm ◽  
Great Probability ◽  
Grover's Algorithm ◽  
One Step ◽  
The One

AbstractWe analyze the mathematical structure of the classical Grover’s algorithm and put it within the framework of linear algebra over the complex numbers. We also generalize it in the sense, that we are seeking not the one ‘chosen’ element (sometimes called a ‘solution’) of the dataset, but a set of m such ‘chosen’ elements (out of $$n>m)$$ n > m ) . Besides, we do not assume that the so-called initial superposition is uniform. We assume also that we have at our disposal an oracle that ‘marks,’ by a suitable phase change $$\varphi $$ φ , all these ‘chosen’ elements. In the first part of the paper, we construct a unique unitary operator that selects all ‘chosen’ elements in one step. The constructed operator is uniquely defined by the numbers $$\varphi $$ φ and $$\alpha $$ α which is a certain function of the coefficients of the initial superposition. Moreover, it is in the form of a composition of two so-called reflections. The result is purely theoretical since the phase change required to reach this heavily depends on $$\alpha $$ α . In the second part, we construct unitary operators having a form of composition of two or more reflections (generalizing the constructed operator) given the set of orthogonal versors. We find properties of these operations, in particular, their compositions. Further, by considering a fixed, ‘convenient’ phase change $$\varphi ,$$ φ , and by sequentially applying the so-constructed operator, we find the number of steps to find these ‘chosen’ elements with great probability. We apply this knowledge to study the generalizations of Grover’s algorithm ($$m=1,\phi =\pi $$ m = 1 , ϕ = π ), which are of the form, the found previously, unitary operators.

KSeCN as an Efficient Cyanide Source for the One-Step Synthesis of Imino-1-oxoisoindolines via Copper-Promoted C−H Activation

2021 ◽  
pp. 153062
Author(s):  
Yue Zhang ◽  
Xinpeng Liu ◽  
Yanan Wang ◽  
Yinan Zhang ◽  
Junwei Wang ◽  
...  
Keyword(s):  
One Step ◽  
The One

scholarly journals Analysis of the robustness of a steel frame structure with composite floors subject to multiple fire scenarios

2021 ◽  
pp. 136943322199249
Author(s):  
Riza Suwondo ◽  
Lee Cunningham ◽  
Martin Gillie ◽  
Colin Bailey
Keyword(s):  
Progressive Collapse ◽  
Three Dimensional ◽  
Steel Structure ◽  
Frame Structure ◽  
Worst Case ◽  
Collapse Resistance ◽  
Fire Scenarios ◽  
Element Approach ◽  
The One ◽  
Steel Frame Structure

This study presents robustness analyses of a three-dimensional multi-storey composite steel structure under the action of multiple fire scenarios. The main objective of the work is to improve current understanding of the collapse resistance of this type of building under different fire situations. A finite element approach was adopted with the model being firstly validated against previous studies available in the literature. The modelling approach was then used to investigate the collapse resistance of the structure for the various fire scenarios examined. Different sizes of fire compartment are considered in this study, starting from one bay, three bays and lastly the whole ground floor as the fire compartment. The investigation allows a fundamental understanding of load redistribution paths and member interactions when local failure occurs. It is concluded that the robustness of the focussed building in a fire is considerably affected by the size of fire compartments as well as fire location. The subject building can resist progressive collapse when the fire occurs only in the one-bay compartment. On the other hand, total collapse occurs when fire is located in the edge three-bay case. This shows that more than one fire scenario needs to be taken into consideration to ensure that a structure of this type can survive from collapse in the worst-case situation.

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