scholarly journals Modulation of the Tomato Rhizosphere Microbiome via Changes in Root Exudation Mediated by the Ethylene Receptor NR

2021 ◽  
Vol 9 (12) ◽  
pp. 2456
Author(s):  
Ruixin Fu ◽  
Haichao Feng ◽  
Francisco Dini-Andreote ◽  
Zhen Wang ◽  
Chunbin Bo ◽  
...  
Keyword(s):  
Eicosapentaenoic Acid ◽  
Root Exudate ◽  
Plant Root ◽  
Root Exudation ◽  
Significant Negative Correlation ◽  
Tomato Plants ◽  
Rhizosphere Bacterial Community ◽  
New Strategies ◽  
Wild Type Control

Plant hormones have been recently shown to exert an indirect influence on the recruitment of plant-associated microbiomes. However, it remains unclear the extent to which the disruption of the ethylene (ET) signaling pathway affects the assembly and functioning of plant-root microbiomes. In this study, the Never-ripe tomato mutant (Nr) was profiled for differences compared to the wild type (control). Tomato plants were subjected to root exudate profiling and the characterization of bacterial and fungal communities. Compared to the control, Nr revealed differences in the composition of root exudates, including lower amounts of esculetin, gallic acid, L-fucose, eicosapentaenoic acid, and higher amounts of β-aldehyde. Interestingly, Nr significantly differed in the composition and functioning of the rhizosphere bacterial community. We also identified the taxa that occurred at relatively higher abundances in Nr, including the genus Lysobacter, which displayed a significant negative correlation with changes in eicosapentaenoic acid and esculetin, and a significant positive correlation with changes in β-aldehyde. Taken together, our study provides evidence that a mutation in the ET receptor exerts predictable changes in the root-associated microbial taxa of tomato plants. These indirect effects can potentially be explored towards new strategies to engineer beneficial plant microbiomes via targeted changes in plant genetics and physiology.

scholarly journals Arbuscular Mycorrhizal Fungal Communities in the Soils of Desert Habitats

2021 ◽  
Vol 9 (2) ◽  
pp. 229
Author(s):  
Martti Vasar ◽  
John Davison ◽  
Siim-Kaarel Sepp ◽  
Maarja Öpik ◽  
Mari Moora ◽  
...  
Keyword(s):  
Plant Root ◽  
Significant Proportion ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Illumina Miseq ◽  
Desert Ecosystems ◽  
Fungal Dna ◽  
Root Symbionts ◽  
Arbuscular Mycorrhizal Fungal

Deserts cover a significant proportion of the Earth’s surface and continue to expand as a consequence of climate change. Mutualistic arbuscular mycorrhizal (AM) fungi are functionally important plant root symbionts, and may be particularly important in drought stressed systems such as deserts. Here we provide a first molecular characterization of the AM fungi occurring in several desert ecosystems worldwide. We sequenced AM fungal DNA from soil samples collected from deserts in six different regions of the globe using the primer pair WANDA-AML2 with Illumina MiSeq. We recorded altogether 50 AM fungal phylotypes. Glomeraceae was the most common family, while Claroideoglomeraceae, Diversisporaceae and Acaulosporaceae were represented with lower frequency and abundance. The most diverse site, with 35 virtual taxa (VT), was in the Israeli Negev desert. Sites representing harsh conditions yielded relatively few reads and low richness estimates, for example, a Saudi Arabian desert site where only three Diversispora VT were recorded. The AM fungal taxa recorded in the desert soils are mostly geographically and ecologically widespread. However, in four sites out of six, communities comprised more desert-affiliated taxa (according to the MaarjAM database) than expected at random. AM fungal VT present in samples were phylogenetically clustered compared with the global taxon pool, suggesting that nonrandom assembly processes, notably habitat filtering, may have shaped desert fungal assemblages.

scholarly journals Rhizosphere-enriched microbes as a pool to design synthetic communities for reproducible beneficial outputs

2019 ◽  
Author(s):  
Maria-Dimitra Tsolakidou ◽  
Ioannis A Stringlis ◽  
Natalia Fanega-Sleziak ◽  
Stella Papageorgiou ◽  
Antria Tsalakou ◽  
...  
Keyword(s):  
Antifungal Activity ◽  
Fungal Pathogens ◽  
Growth Parameters ◽  
Tomato Plants ◽  
Beneficial Effects ◽  
Negative Effect ◽  
Tomato Growth ◽  
In Vitro Antifungal Activity

Abstract Composts represent a sustainable way to suppress diseases and improve plant growth. Identification of compost-derived microbial communities enriched in the rhizosphere of plants and characterization of their traits, could facilitate the design of microbial synthetic communities (SynComs) that upon soil inoculation could yield consistent beneficial effects towards plants. Here, we characterized a collection of compost-derived bacteria, previously isolated from tomato rhizosphere, for in vitro antifungal activity against soil-borne fungal pathogens and for their potential to change growth parameters in Arabidopsis. We further assessed root-competitive traits in the dominant rhizospheric genus Bacillus. Certain isolated rhizobacteria displayed antifungal activity against the tested pathogens and affected growth of Arabidopsis, and Bacilli members possessed several enzymatic activities. Subsequently, we designed two SynComs with different composition and tested their effect on Arabidopsis and tomato growth and health. SynCom1, consisting of different bacterial genera, displayed negative effect on Arabidopsis in vitro, but promoted tomato growth in pots. SynCom2, consisting of Bacilli, didn't affect Arabidopsis growth, enhanced tomato growth and suppressed Fusarium wilt symptoms. Overall, we found selection of compost-derived microbes with beneficial properties in the rhizosphere of tomato plants, and observed that application of SynComs on poor substrates can yield reproducible plant phenotypes.

Ultrastructural characterization of a pigment mutant of the red alga Palmaria palmata

1984 ◽  
Vol 62 (6) ◽  
pp. 1101-1107 ◽  
Author(s):  
C. M. Pueschel ◽  
J. P. van der Meer
Keyword(s):  
Red Alga ◽  
Palmaria Palmata ◽  
Wild Type ◽  
Ultrastructural Examination ◽  
Dark Treatment ◽  
Prolamellar Bodies ◽  
Ultrastructural Characterization ◽  
Wild Type Control

Ultrastructural examination of a green-pigmented mutant of the red alga Palmaria palmata (L.) O. Kuntze revealed unusual features of the chloroplasts. Encircling peripheral thylakoids, characteristic of the wild-type plastids and florideophyte plastids generally, were lacking. Parallel evenly spaced thylakoids occurred in groups, leaving large volumes of thylakoid-free stroma. Irregularly shaped, electron-dense inclusions with an amorphous substructure and diameters up to 3 μm occurred in some plastids. Cells of the sporeling holdfasts contained structures resembling prolamellar bodies. Attempts to induce formation of prolamellar bodies in blades by dark treatment for 5 weeks were unsuccessful. However, some plastids did develop highly corrugated thylakoids with the crests of one thylakoid apposed to the troughs of the adjacent thylakoid. Thylakoid morphology of the wild-type control was not altered by the absence of light.

New Strategies in High Sensitivity Characterization of Proteins Separated from 1-D or 2-D Gels

1995 ◽  
pp. 15-26 ◽  
Author(s):  
Kris Gevaert ◽  
Marc Rider ◽  
Magda Puype ◽  
Jozef Van Damme ◽  
Stefaan De Boeck ◽  
...  
Keyword(s):  
High Sensitivity ◽  
New Strategies

scholarly journals Rhizosphere-enriched microbes as a pool to design synthetic communities for reproducible beneficial outputs

2018 ◽  
Author(s):  
Maria-Dimitra Tsolakidou ◽  
Ioannis A. Stringlis ◽  
Natalia Fanega-Sleziak ◽  
Stella Papageorgiou ◽  
Antria Tsalakou ◽  
...  
Keyword(s):  
Antifungal Activity ◽  
Fungal Pathogens ◽  
Growth Parameters ◽  
Tomato Plants ◽  
Beneficial Effects ◽  
Negative Effect ◽  
Tomato Growth ◽  
Selection Of

AbstractComposts represent a sustainable way to suppress diseases and improve plant growth. Identification of compost-derived microbial communities enriched in the rhizosphere of plants and characterization of their traits, could facilitate the design of microbial synthetic communities (SynComs) that upon soil inoculation could yield consistent beneficial effects towards plants. Here, we characterized a collection of compost-derived bacteria, previously isolated from tomato rhizosphere, forin vitroantifungal activity against soil-borne fungal pathogens and for their potential to change growth parameters inArabidopsis. We further assessed root-competitive traits in the dominant rhizospheric genusBacillus. Certain isolated rhizobacteria displayed antifungal activity against the tested pathogens and affected growth ofArabidopsis, and Bacilli members possessed several enzymatic activities. Subsequently, we designed two SynComs with different composition and tested their effect onArabidopsisand tomato growth and health. SynCom1, consisting of different bacterial genera, displayed negative effect onArabidopsis in vitro, but promoted tomato growth in pots. SynCom2, consisting of Bacilli, didn’t affectArabidopsisgrowth, enhanced tomato growth and suppressed Fusarium wilt symptoms. Overall, we found selection of compost-derived microbes with beneficial properties in the rhizosphere of tomato plants, and observed that application of SynComs on poor substrates can yield reproducible plant phenotypes.

scholarly journals Characterization of theAc/Ds behaviour in transgenic tomato plants using plasmid rescue

1992 ◽  
Vol 20 (1) ◽  
pp. 61-70 ◽  
Author(s):  
Caius M. T. Rommens ◽  
George N. Rudenko ◽  
Paul P. Dijkwel ◽  
Mark J. J. van Haaren ◽  
Pieter B. F. Ouwerkerk ◽  
...  
Keyword(s):  
Transgenic Tomato ◽  
Plasmid Rescue ◽  
Tomato Plants ◽  
Transgenic Tomato Plants

MicroRNAs as Therapeutic Agents: The Future of the Battle Against Cancer

2019 ◽  
Vol 18 (30) ◽  
pp. 2544-2554 ◽  
Author(s):  
Sumit Biswas
Keyword(s):  
Drug Resistance ◽  
Cancer Biology ◽  
Therapeutic Agents ◽  
Nucleotide Level ◽  
Target Mrnas ◽  
Sequencing Technologies ◽  
Tumour Suppressors ◽  
The Future ◽  
New Strategies

Since their discovery in the 1990’s, the study of a class of non-coding, single-stranded RNAs, christened the microRNAs has opened up new vistas in the field of cancer biology. MicroRNAs bind to their target mRNAs to act as either oncogenes or tumour suppressors. With the near-complete elucidation of the biogenesis pathway, and the advent of rapid sequencing technologies, microRNAs have slowly cemented their place as essential biomarkers for delineating the progression, metastasis, relapse or drug resistance of cancer. Being crucial players in the cancer pathway, there has been considerable urgency in designing molecules - both at the nucleotide and non-nucleotide level to counter the effects of their binding. A number of different approaches have yielded quite a body of compounds which have been found to be effective in the treatment of various tumours across many different organs. In this study, the focus is on the review of the timeline of discovery and characterization of microRNAs, underlining their importance in different cancers, shedding light on the discovery of anti-microRNA compounds and illustrating their uses in deriving new strategies to combat cancer.

Non-Contact Thermoacoustic Sensing and Characterization of Plant Root Traits

2019 ◽  
Author(s):  
Ajay Singhvi ◽  
Bo Ma ◽  
Johannes Daniel Scharwies ◽  
Jose R. Dinneny ◽  
Butrus T. Khuri-Yakub ◽  
...  
Keyword(s):  
Plant Root ◽  
Root Traits

In vitro studies on the behaviour of second-stage juveniles of Heterodera schachtii (Nematoda: Heteroderidae) in response to host plant root exudates

Parasitology ◽  
1991 ◽  
Vol 103 (1) ◽  
pp. 149-155 ◽  
Author(s):  
F. Grundler ◽  
L. Schnibbe ◽  
U. Wyss
Keyword(s):  
Root Exudates ◽  
Root Exudate ◽  
Plant Root ◽  
Time Lapse ◽  
Heterodera Schachtii ◽  
Second Stage ◽  
Video Recordings ◽  
Aseptic Conditions ◽  
Agarose Layer

The behaviour of Heterodera schachtii second-stage juveniles in response to mustard (Sinapis alba) rooxudates was observed and analysed under aseptic conditions in a standardized bioassay. Aggregation of juveniles on an agarose layer occurred within less than 30 min in the area where root exudates had been applied and persisted for several hours. Analysis of time-lapse video recordings showed that the aggregation did not result from a directed orientation of the juvenile towards the root exudate. This was supported by an orientation assay using single juveniles. Aggregated juveniles showed pre-infection exploratory behaviour, including stylet thrusting and head-end bending, while staying at rest for several minutes.

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