scholarly journals Machine Learning-Based Plant Detection Algorithms to Automate Counting Tasks Using 3D Canopy Scans

Sensors ◽  
2021 ◽  
Vol 21 (23) ◽  
pp. 8022
Author(s):  
Serkan Kartal ◽  
Sunita Choudhary ◽  
Jan Masner ◽  
Jana Kholova ◽  
Michal Stoces ◽  
...  
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Convolutional Neural Network ◽  
Mung Bean ◽  
Region Growing ◽  
Detection Algorithms ◽  
3D Space ◽  
Manual Counting ◽  
Region Growing Segmentation ◽  
3D Information

This study tested whether machine learning (ML) methods can effectively separate individual plants from complex 3D canopy laser scans as a prerequisite to analyzing particular plant features. For this, we scanned mung bean and chickpea crops with PlantEye (R) laser scanners. Firstly, we segmented the crop canopies from the background in 3D space using the Region Growing Segmentation algorithm. Then, Convolutional Neural Network (CNN) based ML algorithms were fine-tuned for plant counting. Application of the CNN-based (Convolutional Neural Network) processing architecture was possible only after we reduced the dimensionality of the data to 2D. This allowed for the identification of individual plants and their counting with an accuracy of 93.18% and 92.87% for mung bean and chickpea plants, respectively. These steps were connected to the phenotyping pipeline, which can now replace manual counting operations that are inefficient, costly, and error-prone. The use of CNN in this study was innovatively solved with dimensionality reduction, addition of height information as color, and consequent application of a 2D CNN-based approach. We found there to be a wide gap in the use of ML on 3D information. This gap will have to be addressed, especially for more complex plant feature extractions, which we intend to implement through further research.

scholarly journals Machine learning for image-based detection of patients with obstructive sleep apnea: an exploratory study

2021 ◽  
Author(s):  
Satoru Tsuiki ◽  
Takuya Nagaoka ◽  
Tatsuya Fukuda ◽  
Yuki Sakamoto ◽  
Fernanda R. Almeida ◽  
...  
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Obstructive Sleep Apnea ◽  
Sleep Apnea ◽  
Convolutional Neural Network ◽  
Deep Convolutional Neural Network ◽  
Apnea Hypopnea Index ◽  
Cephalometric Analysis ◽  
Obstructive Sleep ◽  
Main Region

Abstract Purpose In 2-dimensional lateral cephalometric radiographs, patients with severe obstructive sleep apnea (OSA) exhibit a more crowded oropharynx in comparison with non-OSA. We tested the hypothesis that machine learning, an application of artificial intelligence (AI), could be used to detect patients with severe OSA based on 2-dimensional images. Methods A deep convolutional neural network was developed (n = 1258; 90%) and tested (n = 131; 10%) using data from 1389 (100%) lateral cephalometric radiographs obtained from individuals diagnosed with severe OSA (n = 867; apnea hypopnea index > 30 events/h sleep) or non-OSA (n = 522; apnea hypopnea index < 5 events/h sleep) at a single center for sleep disorders. Three kinds of data sets were prepared by changing the area of interest using a single image: the original image without any modification (full image), an image containing a facial profile, upper airway, and craniofacial soft/hard tissues (main region), and an image containing part of the occipital region (head only). A radiologist also performed a conventional manual cephalometric analysis of the full image for comparison. Results The sensitivity/specificity was 0.87/0.82 for full image, 0.88/0.75 for main region, 0.71/0.63 for head only, and 0.54/0.80 for the manual analysis. The area under the receiver-operating characteristic curve was the highest for main region 0.92, for full image 0.89, for head only 0.70, and for manual cephalometric analysis 0.75. Conclusions A deep convolutional neural network identified individuals with severe OSA with high accuracy. Future research on this concept using AI and images can be further encouraged when discussing triage of OSA.

scholarly journals Unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Peter M. Maloca ◽  
Philipp L. Müller ◽  
Aaron Y. Lee ◽  
Adnan Tufail ◽  
Konstantinos Balaskas ◽  
...  
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Optical Coherence Tomography ◽  
Image Segmentation ◽  
Convolutional Neural Network ◽  
Learning Algorithm ◽  
Ground Truth ◽  
Optical Coherence Tomography Image ◽  
Optical Coherence ◽  
Tomography Image

AbstractMachine learning has greatly facilitated the analysis of medical data, while the internal operations usually remain intransparent. To better comprehend these opaque procedures, a convolutional neural network for optical coherence tomography image segmentation was enhanced with a Traceable Relevance Explainability (T-REX) technique. The proposed application was based on three components: ground truth generation by multiple graders, calculation of Hamming distances among graders and the machine learning algorithm, as well as a smart data visualization (‘neural recording’). An overall average variability of 1.75% between the human graders and the algorithm was found, slightly minor to 2.02% among human graders. The ambiguity in ground truth had noteworthy impact on machine learning results, which could be visualized. The convolutional neural network balanced between graders and allowed for modifiable predictions dependent on the compartment. Using the proposed T-REX setup, machine learning processes could be rendered more transparent and understandable, possibly leading to optimized applications.

scholarly journals Validating Deep Neural Networks for Online Decoding of Motor Imagery Movements from EEG Signals

Sensors ◽  
2019 ◽  
Vol 19 (1) ◽  
pp. 210 ◽  
Author(s):  
Zied Tayeb ◽  
Juri Fedjaev ◽  
Nejla Ghaboosi ◽  
Christoph Richter ◽  
Lukas Everding ◽  
...  
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Motor Imagery ◽  
Classification Performance ◽  
Feature Engineering ◽  
Learning Models ◽  
Eeg Signals ◽  
Learning Methods

Non-invasive, electroencephalography (EEG)-based brain-computer interfaces (BCIs) on motor imagery movements translate the subject’s motor intention into control signals through classifying the EEG patterns caused by different imagination tasks, e.g., hand movements. This type of BCI has been widely studied and used as an alternative mode of communication and environmental control for disabled patients, such as those suffering from a brainstem stroke or a spinal cord injury (SCI). Notwithstanding the success of traditional machine learning methods in classifying EEG signals, these methods still rely on hand-crafted features. The extraction of such features is a difficult task due to the high non-stationarity of EEG signals, which is a major cause by the stagnating progress in classification performance. Remarkable advances in deep learning methods allow end-to-end learning without any feature engineering, which could benefit BCI motor imagery applications. We developed three deep learning models: (1) A long short-term memory (LSTM); (2) a spectrogram-based convolutional neural network model (CNN); and (3) a recurrent convolutional neural network (RCNN), for decoding motor imagery movements directly from raw EEG signals without (any manual) feature engineering. Results were evaluated on our own publicly available, EEG data collected from 20 subjects and on an existing dataset known as 2b EEG dataset from “BCI Competition IV”. Overall, better classification performance was achieved with deep learning models compared to state-of-the art machine learning techniques, which could chart a route ahead for developing new robust techniques for EEG signal decoding. We underpin this point by demonstrating the successful real-time control of a robotic arm using our CNN based BCI.

EMOTIONS RECOGNITION IN HUMAN SPEECH USING DEEP NEURAL NETWORKS

2021 ◽  
pp. 44-51
Author(s):  
E. Yu. Shchetinin
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Neural Networks ◽  
Convolutional Neural Network ◽  
Recurrent Neural Network ◽  
Deep Neural Networks ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
Audio Recordings ◽  
Computer Studies

The recognition of human emotions is one of the most relevant and dynamically developing areas of modern speech technologies, and the recognition of emotions in speech (RER) is the most demanded part of them. In this paper, we propose a computer model of emotion recognition based on an ensemble of bidirectional recurrent neural network with LSTM memory cell and deep convolutional neural network ResNet18. In this paper, computer studies of the RAVDESS database containing emotional speech of a person are carried out. RAVDESS-a data set containing 7356 files. Entries contain the following emotions: 0 – neutral, 1 – calm, 2 – happiness, 3 – sadness, 4 – anger, 5 – fear, 6 – disgust, 7 – surprise. In total, the database contains 16 classes (8 emotions divided into male and female) for a total of 1440 samples (speech only). To train machine learning algorithms and deep neural networks to recognize emotions, existing audio recordings must be pre-processed in such a way as to extract the main characteristic features of certain emotions. This was done using Mel-frequency cepstral coefficients, chroma coefficients, as well as the characteristics of the frequency spectrum of audio recordings. In this paper, computer studies of various models of neural networks for emotion recognition are carried out on the example of the data described above. In addition, machine learning algorithms were used for comparative analysis. Thus, the following models were trained during the experiments: logistic regression (LR), classifier based on the support vector machine (SVM), decision tree (DT), random forest (RF), gradient boosting over trees – XGBoost, convolutional neural network CNN, recurrent neural network RNN (ResNet18), as well as an ensemble of convolutional and recurrent networks Stacked CNN-RNN. The results show that neural networks showed much higher accuracy in recognizing and classifying emotions than the machine learning algorithms used. Of the three neural network models presented, the CNN + BLSTM ensemble showed higher accuracy.

Region-growing fully convolutional neural network interactive segmentation of liver CT images

2021 ◽  
Vol 36 (9) ◽  
pp. 1294-1304
Author(s):  
Li-juan ZHANG ◽  
◽  
Run ZHANG ◽  
Dong-ming LI ◽  
Yang LI ◽  
...  
Keyword(s):  
Neural Network ◽  
Convolutional Neural Network ◽  
Region Growing ◽  
Ct Images ◽  
Interactive Segmentation ◽  
Liver Ct

Landslide susceptibility mapping based on convolutional neural network and conventional machine learning methods

2021 ◽  
Author(s):  
Rui Liu ◽  
Xin Yang ◽  
Chong Xu ◽  
Luyao Li ◽  
Xiangqiang Zeng
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Convolutional Neural Network ◽  
Landslide Susceptibility ◽  
Susceptibility Mapping ◽  
Landslide Susceptibility Mapping ◽  
Support Vector ◽  
Learning Methods ◽  
Machine Learning Methods ◽  
Conventional Machine

Abstract Landslide susceptibility mapping (LSM) is a useful tool to estimate the probability of landslide occurrence, providing a scientific basis for natural hazards prevention, land use planning, and economic development in landslide-prone areas. To date, a large number of machine learning methods have been applied to LSM, and recently the advanced Convolutional Neural Network (CNN) has been gradually adopted to enhance the prediction accuracy of LSM. The objective of this study is to introduce a CNN based model in LSM and systematically compare its overall performance with the conventional machine learning models of random forest, logistic regression, and support vector machine. Herein, we selected the Jiuzhaigou region in Sichuan Province, China as the study area. A total number of 710 landslides and 12 predisposing factors were stacked to form spatial datasets for LSM. The ROC analysis and several statistical metrics, such as accuracy, root mean square error (RMSE), Kappa coefficient, sensitivity, and specificity were used to evaluate the performance of the models in the training and validation datasets. Finally, the trained models were calculated and the landslide susceptibility zones were mapped. Results suggest that both CNN and conventional machine-learning based models have a satisfactory performance (AUC: 85.72% − 90.17%). The CNN based model exhibits excellent good-of-fit and prediction capability, and achieves the highest performance (AUC: 90.17%) but also significantly reduces the salt-of-pepper effect, which indicates its great potential of application to LSM.

Automating Well Log Correlation Workflow Using Soft Attention Convolutional Neural Networks

2021 ◽  
Author(s):  
Aria Abubakar ◽  
Mandar Kulkarni ◽  
Anisha Kaul
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Convolutional Neural Network ◽  
Gamma Ray ◽  
Learning Algorithm ◽  
Machine Learning Algorithm ◽  
Well Log ◽  
Machine Learning Model ◽  
Well Correlation ◽  
Geological Formations

Abstract In the process of deriving the reservoir petrophysical properties of a basin, identifying the pay capability of wells by interpreting various geological formations is key. Currently, this process is facilitated and preceded by well log correlation, which involves petrophysicists and geologists examining multiple raw log measurements for the well in question, indicating geological markers of formation changes and correlating them with those of neighboring wells. As it may seem, this activity of picking markers of a well is performed manually and the process of ‘examining’ may be highly subjective, thus, prone to inconsistencies. In our work, we propose to automate the well correlation workflow by using a Soft- Attention Convolutional Neural Network to predict well markers. The machine learning algorithm is supervised by examples of manual marker picks and their corresponding occurrence in logs such as gamma-ray, resistivity and density. Our experiments have shown that, specifically, the attention mechanism allows the Convolutional Neural Network to look at relevant features or patterns in the log measurements that suggest a change in formation, making the machine learning model highly precise.

scholarly journals Segmentation and Multi-Scale Convolutional Neural Network-Based Classification of Airborne Laser Scanner Data

Sensors ◽  
2018 ◽  
Vol 18 (10) ◽  
pp. 3347 ◽  
Author(s):  
Zhishuang Yang ◽  
Bo Tan ◽  
Huikun Pei ◽  
Wanshou Jiang
Keyword(s):  
Neural Network ◽  
Convolutional Neural Network ◽  
Laser Scanning ◽  
Laser Scanner ◽  
Region Growing ◽  
Point Clouds ◽  
Classification Method ◽  
Multi Scale ◽  
Airborne Laser

The classification of point clouds is a basic task in airborne laser scanning (ALS) point cloud processing. It is quite a challenge when facing complex observed scenes and irregular point distributions. In order to reduce the computational burden of the point-based classification method and improve the classification accuracy, we present a segmentation and multi-scale convolutional neural network-based classification method. Firstly, a three-step region-growing segmentation method was proposed to reduce both under-segmentation and over-segmentation. Then, a feature image generation method was used to transform the 3D neighborhood features of a point into a 2D image. Finally, feature images were treated as the input of a multi-scale convolutional neural network for training and testing tasks. In order to obtain performance comparisons with existing approaches, we evaluated our framework using the International Society for Photogrammetry and Remote Sensing Working Groups II/4 (ISPRS WG II/4) 3D labeling benchmark tests. The experiment result, which achieved 84.9% overall accuracy and 69.2% of average F1 scores, has a satisfactory performance over all participating approaches analyzed.

scholarly journals A quantum convolutional neural network on NISQ devices

2022 ◽  
Vol 32 (1) ◽  
Author(s):  
ShiJie Wei ◽  
YanHu Chen ◽  
ZengRong Zhou ◽  
GuiLu Long
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Convolutional Neural Network ◽  
Quantum Circuits ◽  
Image Smoothing ◽  
Quantum Devices ◽  
Computing Complexity ◽  
Machine Learning Model ◽  
Mask Size ◽  
Near Term

AbstractQuantum machine learning is one of the most promising applications of quantum computing in the noisy intermediate-scale quantum (NISQ) era. We propose a quantum convolutional neural network(QCNN) inspired by convolutional neural networks (CNN), which greatly reduces the computing complexity compared with its classical counterparts, with O((log2M)6) basic gates and O(m2+e) variational parameters, where M is the input data size, m is the filter mask size, and e is the number of parameters in a Hamiltonian. Our model is robust to certain noise for image recognition tasks and the parameters are independent on the input sizes, making it friendly to near-term quantum devices. We demonstrate QCNN with two explicit examples. First, QCNN is applied to image processing, and numerical simulation of three types of spatial filtering, image smoothing, sharpening, and edge detection is performed. Secondly, we demonstrate QCNN in recognizing image, namely, the recognition of handwritten numbers. Compared with previous work, this machine learning model can provide implementable quantum circuits that accurately corresponds to a specific classical convolutional kernel. It provides an efficient avenue to transform CNN to QCNN directly and opens up the prospect of exploiting quantum power to process information in the era of big data.

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