scholarly journals Seasonal Variability of the Airborne Eukaryotic Community Structure at a Coastal Site of the Central Mediterranean

Toxins ◽  
2021 ◽  
Vol 13 (8) ◽  
pp. 518
Author(s):  
Mattia Fragola ◽  
Maria Rita Perrone ◽  
Pietro Alifano ◽  
Adelfia Talà ◽  
Salvatore Romano
Keyword(s):  
Community Structure ◽  
Rank Order ◽  
Correlation Coefficients ◽  
Pathogenic Fungi ◽  
Taxonomic Structure ◽  
Central Mediterranean ◽  
Coastal Site ◽  
Eukaryotic Community ◽  
Structure Changes ◽  
The Impact

The atmosphere represents an underexplored temporary habitat for airborne microbial communities such as eukaryotes, whose taxonomic structure changes across different locations and/or regions as a function of both survival conditions and sources. A preliminary dataset on the seasonal dependence of the airborne eukaryotic community biodiversity, detected in PM10 samples collected from July 2018 to June 2019 at a coastal site representative of the Central Mediterranean, is provided in this study. Viridiplantae and Fungi were the most abundant eukaryotic kingdoms. Streptophyta was the prevailing Viridiplantae phylum, whilst Ascomycota and Basidiomycota were the prevailing Fungi phyla. Brassica and Panicum were the most abundant Streptophyta genera in winter and summer, respectively, whereas Olea was the most abundant genus in spring and autumn. With regards to Fungi, Botrytis and Colletotrichum were the most abundant Ascomycota genera, reaching the highest abundance in spring and summer, respectively, while Cryptococcus and Ustilago were the most abundant Basidiomycota genera, and reached the highest abundance in winter and spring, respectively. The genus community structure in the PM10 samples varied day-by-day, and mainly along with the seasons. The impact of long-range transported air masses on the same structure was also proven. Nevertheless, rather few genera were significantly correlated with meteorological parameters and PM10 mass concentrations. The PCoA plots and non-parametric Spearman’s rank-order correlation coefficients showed that the strongest correlations generally occurred between parameters reaching high abundances/values in the same season or PM10 sample. Moreover, the screening of potential pathogenic fungi allowed us to detect seven potential pathogenic genera in our PM10 samples. We also found that, with the exception of Panicum and Physcomitrella, all of the most abundant and pervasive identified Streptophyta genera could serve as potential sources of aeroallergens in the studied area.

Impact of an urban effluent on the bacterial community structure in the Arga River (Spain), with special reference to culturable Gram-negative rods

1999 ◽  
Vol 45 (10) ◽  
pp. 826-832 ◽  
Author(s):  
Marisol Goñi-Urriza ◽  
Michèle Capdepuy ◽  
Nathalie Raymond ◽  
Claudine Quentin ◽  
Pierre Caumette
Keyword(s):  
Community Structure ◽  
Bacterial Community ◽  
Bacterial Community Structure ◽  
Heterotrophic Bacteria ◽  
Sampling Station ◽  
Gram Negative ◽  
Structure Changes ◽  
Sampling Zone ◽  
The Impact ◽  
Urban Effluent

The Arga River is an interesting system in which to study the impact of urban effluent pollution because it receives a single effluent in the form of wastewater discharge from the city of Pamplona. To analyze the extent of this discharge, total bacteria, culturable heterotrophic bacteria, and Gram-negative heterotrophic bacteria were enumerated and 409 isolates of the latter were identified. One sampling station was located upstream from the inflow, while five were located up to 30 km downstream. Bacterial counts increased drastically downstream from the wastewater inflow. Total bacterial numbers decreased along the 30 km downstream, the last station attaining similar values to those recorded upstream from the discharge. However, culturable heterotrophic and Gram-negative heterotrophic bacteria levels generally remained significantly higher within the 30 km zone investigated. Among the 409 isolates identified, Aeromonas spp. were the most frequent both upstream and downstream from the discharge. In contrast, although strains belonging to different genera of Enterobacteriaceae were found in all stations, their occurrence was significantly higher just downstream from the polluted discharge. Acinetobacter spp., which were never found upstream, were detected in all stations below the discharge. Our results clearly show that the bacterial community structure changes definitively downstream from the discharge and that Aeromonas were common throughout the sampling zone. Thus they cannot be considered good indicators of pollution in this setting compared to some genera of Enterobacteriaceae or some species ofAcinetobacter, the distribution of which correlated better with the distance from the wastewater discharge.Key words: Aeromonas, Enterobacteriaceae, sewage, freshwater.

scholarly journals Zooplankton diel vertical migration and downward C into the Oxygen Minimum Zone in the highly productive upwelling region off Northern Chile

2019 ◽  
Author(s):  
Pritha Tutasi ◽  
Ruben Escribano
Keyword(s):  
Community Structure ◽  
Vertical Migration ◽  
Diel Vertical Migration ◽  
Oxygen Minimum Zone ◽  
Taxonomic Structure ◽  
Northern Chile ◽  
Daily Rate ◽  
Minimum Zone ◽  
The Impact ◽  
Oxygen Minimum

Abstract. The daily vertical movement of zooplankton, known as diel vertical migration (DVM), can enhance the vertical flux of carbon (C) and so contributing to the functioning of the biological pump. The magnitude and efficiency of this active transport of C may depend on the size and taxonomic structure of the migrant zooplankton. However, the impact that a variable community structure can have on zooplankton-mediated downward C has not been properly addressed. This taxonomic effect may become critically important in highly productive eastern boundary upwelling systems (EBUS), where zooplankton biomass becomes aggregated in the coastal zone, but comprised by a highly variable community structure (size-composition). In these systems, presence of a subsurface oxygen minimum zone (OMZ) can impose an additional constraint to vertical migration and so influencing the downward C export. Here, we address these issues based on a high-resolution zooplankton sampling at three stations off northern Chile (20°S−30°S) during November 2015. Automated analysis of zooplankton composition and taxa-structured biomass allowed us to estimate daily migrant biomass by taxa, amplitude of migration and daily rate of migration, defined as the daily exchange of biomass between the upper mixed layer and below the thermocline. We found that high biomass aggregates above the oxycline, associated with more oxygenated surface waters and this condition was more evident upon a more intense OMZ. Some taxa however, were found closely associated with the OMZ. We found that most taxa were able to perform DVM in the upwelling zone withstanding severe hypoxia. Even, several strong migrants, such as copepods Eucalanidae and Euphausiids, can exhibit a large migration amplitude (~500 m), remaining either temporarily or permanently during the day or night condition within the core of the OMZ and so contributing to the release of C below the thermocline. Our estimates of DVM-mediated C flux showed that migrant biomass (5099 ± 2701 mg C m−2d−1) may contribute with about 678 ± 465 mg C m−2d−1 to the OMZ system through respiration, mortality, and production of fecal pellets, implying the existence of a very efficient mechanism to incorporate freshly produced C into the OMZ. This downward C by zooplankton is however strongly depending on taxonomic structure due to variable migration amplitude and behavior affecting the daily rate of diel vertical migration.

scholarly journals 229. Hospitalists Antimicrobial Scorecard Improves Antibiotic Prescribing at a Community Teaching Hospital

2020 ◽  
Vol 7 (Supplement_1) ◽  
pp. S116-S116
Author(s):  
Julia Sessa ◽  
Helen Jacoby ◽  
Bruce Blain ◽  
Lisa Avery
Keyword(s):  
Patient Care ◽  
Teaching Hospital ◽  
Antimicrobial Stewardship ◽  
Rank Order ◽  
Antibiotic Use ◽  
Outpatient Setting ◽  
Antibiotic Prescribing ◽  
Full Time ◽  
Days Of Therapy ◽  
The Impact

Abstract Background Measuring antimicrobial consumption data is a foundation of antimicrobial stewardship programs. There is data to support antimicrobial scorecard utilization to improve antibiotic use in the outpatient setting. There is a lack of data on the impact of an antimicrobial scorecard for hospitalists. Our objective was to improve antibiotic prescribing amongst the hospitalist service through the development of an antimicrobial scorecard. Methods Conducted in a 451-bed teaching hospital amongst 22 full time hospitalists. The antimicrobial scorecard for 2019 was distributed in two phases. In October 2019, baseline antibiotic prescribing data (January – September 2019) was distributed. In January 2020, a second scorecard was distributed (October – December 2019) to assess the impact of the scorecard. The scorecard distributed via e-mail to physicians included: Antibiotic days of therapy/1,000 patient care days (corrected for attending census), route of antibiotic prescribing (% intravenous (IV) vs % oral (PO)) and percentage of patients prescribed piperacillin-tazobactam (PT) for greater than 3 days. Hospitalists received their data in rank order amongst their peers. Along with the antimicrobial scorecard, recommendations from the antimicrobial stewardship team were included for hospitalists to improve their antibiotic prescribing for these initiatives. Hospitalists demographics (years of practice and gender) were collected. Descriptive statistics were utilized to analyze pre and post data. Results Sixteen (16) out of 22 (73%) hospitalists improved their antibiotic prescribing from pre- to post-scorecard (χ 2(1)=3.68, p = 0.055). The median antibiotic days of therapy/1,000 patient care days decreased from 661 pre-scorecard to 618 post-scorecard (p = 0.043). The median PT use greater than 3 days also decreased significantly, from 18% pre-scorecard to 11% post-scorecard (p = 0.0025). There was no change in % of IV antibiotic prescribing and no correlation between years of experience or gender to antibiotic prescribing. Conclusion Providing antimicrobial scorecards to our hospitalist service resulted in a significant decrease in antibiotic days of therapy/1,000 patient care days and PT prescribing beyond 3 days. Disclosures All Authors: No reported disclosures

scholarly journals THU0433 TREATMENT WITH PEGLOTICASE IMPROVES HEPATIC FIBROSIS ESTIMATED BY FIBROSIS-4 INDEX IN SUBJECTS WITH CHRONIC REFRACTORY GOUT

2020 ◽  
Vol 79 (Suppl 1) ◽  
pp. 454.1-454
Author(s):  
N. Schlesinger ◽  
A. Yeo ◽  
P. Lipsky
Keyword(s):  
Liver Disease ◽  
Linear Regression ◽  
Rank Order ◽  
Linear Regression Analysis ◽  
Area Under The Curve ◽  
Serum Urate ◽  
Complete Analysis ◽  
Alcoholic Fatty Liver ◽  
Significant Difference ◽  
The Impact

Background:Hyperuricemia is associated with non-alcoholic fatty liver disease (NAFLD)1,2, but the relationship to fibrosis remains uncertain3. Moreover, it is not known whether lowering serum urate will affect the course of NAFLD. The availability of data from two randomized trials of pegloticase, a pegylated recombinant mammalian uricase, that profoundly decreases serum urate afforded the opportunity to test the hypothesis that lowering urate might improve NAFLD.Objectives:To determine whether treatment of chronic refractory gout patients with pegloticase was associated with improvement in NAFLD determined by Fibrosis 4 index (Fib4).Methods:Databases from patients with chronic refractory gout who participated in two randomized 6 month clinical trials (RCTs) of pegloticase were analyzed4. Sub-sets who had persistent urate lowering to levels <1 mg/dL in response to biweekly pegloticase (Responders, n=36) were compared to those who received placebo (n=43). Since liver biopsy information was not available on these subjects, we relied on Fib4, a validated non-invasive estimate of liver fibrosis in a variety of liver diseases5,6calculated from measurements of AST, ALT, platelet count and age (Age x AST/platelets x √ALT). A Fib4 value of 1.3 is an indication that further evaluation of liver disease is warranted.Results:At baseline, the mean Fib4 values were 1.40 ± 0.86 in pegloticase responders and 1.04 ± 0.53 in subjects receiving placebo. As shown in figure 1, subjects receiving placebo exhibited a change of 0.26 ± 0.41 in the Fib4 score over the six months of the RCTs compared with 0.13 ± 0.62 in the pegloticase responders (p=0.048; by linear regression). When only the subjects with a Fib4 value > 1.3 were considered, a significant difference in the change in the Fib4 values over the 6 months of the trial between pegloticase responders and those receiving placebo was also observed (-0.15 ± 0.67 vs 0.37 ± 0.42, p=0.004, by linear regression). The correlations between serum urate area under the curve (AUC) over the 6 months of the trial and the change in Fib4 value was rs=0.33, p=0.0.0004 (Spearman rank-order correlation coefficient). Finally, multiple linear regression analysis indicated serum urate AUC (as a surrogate measure for group) is the main contributor to the change in Fib4 (p=0.018 by linear regression).Conclusion:The data are consistent with the conclusion that persistent lowering of serum urate had a significant impact on Fib4 levels, implying a possible effect on the course of NAFLD. The results support a more complete analysis involving biopsy examination of the impact of urate on liver inflammation and fibrosis.References:[1]Yang C et al. PlosOne2017; 12:e0177249[2]Jaruvongvanich V et al. Eur J Gastroenterol Hepatol 2017; 29:1031[3]Jaruvongvanich V et al. Eur J Gastroenterol Hepatol 2017; 29:694[4]Sundy JS, et al. JAMA. 2011; 306 (7):711-20[5]Sterling RK et al. Hepatol 2006; 43:1317[6]Shah AG et al. Clin Gastroenterol Hepatol 2009;7:1104Disclosure of Interests: :Naomi Schlesinger Grant/research support from: Pfizer, Amgen, Consultant of: Novartis, Horizon Therapeutics, Selecta Biosciences, Olatec, IFM Therapeutics, Mallinckrodt Pharmaceuticals, Anthony Yeo Employee of: Horizon Therapeutics, Peter Lipsky Consultant of: Horizon Therapeutics

scholarly journals Response of ocean phytoplankton community structure to climate change over the 21st century: partitioning the effects of nutrients, temperature and light

2010 ◽  
Vol 7 (12) ◽  
pp. 3941-3959 ◽  
Author(s):  
I. Marinov ◽  
S. C. Doney ◽  
I. D. Lima
Keyword(s):  
Climate Change ◽  
Community Structure ◽  
Sea Ice ◽  
Phytoplankton Biomass ◽  
Phytoplankton Community ◽  
Vertical Mixing ◽  
Phytoplankton Community Structure ◽  
Marginal Sea ◽  
Small Phytoplankton ◽  
The Impact

Abstract. The response of ocean phytoplankton community structure to climate change depends, among other factors, upon species competition for nutrients and light, as well as the increase in surface ocean temperature. We propose an analytical framework linking changes in nutrients, temperature and light with changes in phytoplankton growth rates, and we assess our theoretical considerations against model projections (1980–2100) from a global Earth System model. Our proposed "critical nutrient hypothesis" stipulates the existence of a critical nutrient threshold below (above) which a nutrient change will affect small phytoplankton biomass more (less) than diatom biomass, i.e. the phytoplankton with lower half-saturation coefficient K are influenced more strongly in low nutrient environments. This nutrient threshold broadly corresponds to 45° S and 45° N, poleward of which high vertical mixing and inefficient biology maintain higher surface nutrient concentrations and equatorward of which reduced vertical mixing and more efficient biology maintain lower surface nutrients. In the 45° S–45° N low nutrient region, decreases in limiting nutrients – associated with increased stratification under climate change – are predicted analytically to decrease more strongly the specific growth of small phytoplankton than the growth of diatoms. In high latitudes, the impact of nutrient decrease on phytoplankton biomass is more significant for diatoms than small phytoplankton, and contributes to diatom declines in the northern marginal sea ice and subpolar biomes. In the context of our model, climate driven increases in surface temperature and changes in light are predicted to have a stronger impact on small phytoplankton than on diatom biomass in all ocean domains. Our analytical predictions explain reasonably well the shifts in community structure under a modeled climate-warming scenario. Climate driven changes in nutrients, temperature and light have regionally varying and sometimes counterbalancing impacts on phytoplankton biomass and structure, with nutrients and temperature dominant in the 45° S–45° N band and light-temperature effects dominant in the marginal sea-ice and subpolar regions. As predicted, decreases in nutrients inside the 45° S–45° N "critical nutrient" band result in diatom biomass decreasing more than small phytoplankton biomass. Further stratification from global warming could result in geographical shifts in the "critical nutrient" threshold and additional changes in ecology.

Tu1716 Evaluation of the Impact of Different Commercially Available DNA Extraction Kits and Laboratories for Assessing Bacterial Community Structure in Fecal Samples - Implications for IBD Research

2013 ◽  
Vol 144 (5) ◽  
pp. S-829
Author(s):  
Nicholas A. Kennedy ◽  
Alan Walker ◽  
UK IBD Microbiota Consortia ◽  
UK IBD Genetics Consortia ◽  
Susan H. Berry ◽  
...  
Keyword(s):  
Community Structure ◽  
Bacterial Community ◽  
Dna Extraction ◽  
Bacterial Community Structure ◽  
Fecal Samples ◽  
The Impact

Experimental Investigation on Improving Electromechanical Impedance Based Damage Detection by Temperature Compensation

2013 ◽  
Vol 569-570 ◽  
pp. 1132-1139 ◽  
Author(s):  
Thomas Siebel ◽  
Mihail Lilov
Keyword(s):  
Damage Detection ◽  
Structural Damage ◽  
Temperature Compensation ◽  
Impact Damage ◽  
Correlation Coefficients ◽  
Electromechanical Impedance ◽  
Reinforced Plastic ◽  
Influence Of Temperature On ◽  
Compensation Approach ◽  
The Impact

The sensitivity of the electromechanical impedance to structural damage under varying temperature is investigated in this paper. An approach based on maximizing cross-correlation coefficients is used to compensate temperature effects. The experiments are carried out on an air plane conform carbon fiber reinforced plastic (CFRP) panel (500mm x 500mm x 5mm) instrumented with 26 piezoelectric transducers of two different sizes. In a first step, the panel is stepwise subjected to temperatures between-50 °C and 100 °C. The influence of varying temperatures on the measured impedances and the capability of the temperature compensation approach are analyzed. Next, the sensitivity to a 200 J impact damage is analyzed and it is set in relation to the influence of a temperature change. It becomes apparent the impact of the transducer size and location on the quality of the damage detection. The results further indicate a significant influence of temperature on the measured spectra. However, applying the temperature compensation algorithm can reduce the temperature effect at the same time increasing the transducer sensitivity within its measuring area. The paper concludes with a discussion about the trade-off between the sensing area, where damage should be detected, and the temperature range, in which damage within this area can reliably be detected.

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