scholarly journals Nutrients Drive the Structures of Bacterial Communities in Sediments and Surface Waters in the River-Lake System of Poyang Lake

Water ◽  
2019 ◽  
Vol 11 (5) ◽  
pp. 930 ◽  
Author(s):  
Ze Ren ◽  
Xiaodong Qu ◽  
Wenqi Peng ◽  
Yang Yu ◽  
Min Zhang
Keyword(s):  
Surface Waters ◽  
Bacterial Communities ◽  
Poyang Lake ◽  
Current Knowledge ◽  
Interactive System ◽  
Lake Ecosystem ◽  
Rrna Gene ◽  
Nitrogen And Phosphorus ◽  
Lake Ecosystems ◽  
Lake System

Lake and its inflow rivers compose a highly linked river-lake system, within which sediment and water are also closely connected. However, our understanding of this linked and interactive system remains unclear. In this study, we examined bacterial communities in the sediments and surface waters in Poyang Lake and its five tributaries. Bacterial communities were determined while using high-throughput 16S rRNA gene sequencing. The results showed significant differences of bacterial communities between sediments and surface waters, as well as between Poyang lake and its tributaries, suggesting that the river-lake system of Poyang Lake provides diverse and distinct habitats for bacterial communities, including lake water, lake sediment, river water, and river sediment. These biomes harbor distinct bacterial assemblages. Sediments harbor more diverse bacterial taxa than surface waters, but the bacterial communities in surface waters were more different across this river-lake system than those in sediments. In this eutrophic river-lake ecosystem, nitrogen and phosphorus were important drivers in sediment bacterial communities. Nitrogen, phosphorus, and dissolved organic carbon, as well as their stoichiometric ratios affected bacterial communities in surface waters. Moreover, network analysis revealed that the bacterial communities in surface waters were more vulnerable to various disturbances than in sediments, due to lower alpha diversity, high complexity of network, and a small number of key taxa (module hubs and connectors). Nutrient variables had strong influences on individual operational taxonomic units (OTUs) in the network, especially in bacterial network in surface waters. Different groups of taxa responded differently to nutrients, with some modules being more susceptible to nutrient variations. This study increased our current knowledge of linked river-lake ecosystems and provided valuable understanding for effective management and protection of these ecosystems by revealing bacterial communities in sediments and surface waters in Poyang Lake and its tributaries, as well as their responses to nutrients variation.

scholarly journals Variation of bacterial communities along the vertical gradient in Lake Issyk Kul, Kyrgyzstan

2019 ◽  
Author(s):  
Keilor Rojas-Jimenez ◽  
Alex Araya-Lobo ◽  
Fabio Quesada-Perez ◽  
Johana Akerman-Sanchez ◽  
Brayan Delgado-Duran ◽  
...  
Keyword(s):  
Surface Waters ◽  
Bacterial Communities ◽  
Alpha Diversity ◽  
Vertical Gradient ◽  
Rrna Gene ◽  
Deep Chlorophyll Maximum ◽  
16S Rrna Gene Sequences ◽  
Lake Ecosystems ◽  
Notable Increase ◽  
Learning Analysis

AbstractIn this study, we explored the diversity and community composition of bacteria along a vertical gradient in Lake Issyk Kul, Kyrgyzstan, one of the largest and deepest brackish lakes in in the world. We identified 4904 bacterial ASVs based on analysis of 16S rRNA gene sequences and determined significant changes in the composition responding mainly to the variables depth and salinity. A higher abundance of Proteobacteria and Bacteroidetes was observed in the surface waters and the lake tributaries. Cyanobacteria were more abundant in the deep chlorophyll maximum (28.5 to 128 m), while Planctomycetes and Chloroflexi were dominant at depths between 128 to 600 m. According to our machine learning analysis used for identifying the most critical environmental factors, depth and temperature revealed the strongest effect on members of Proteobacteria, Planctomycetes, and Chloroflexi, while oxygen is associated with the variations in Cyanobacteria. Also, a notable increase in alpha diversity estimations was observed with increasing water depth. This work evidences significant differences in the structure of bacterial communities along the depth gradient in deep, transparent lake ecosystems. Notably, there is a dominance of Planctomycetes and Chloroflexi in the deepest layers, which can only be seen in a few other lakes with similar characteristics as Lake Issyk Kul and raises questions about their ecological role.

scholarly journals Bacterial communities of Beijing surface waters as revealed by 454 pyrosequencing of the 16S rRNA gene

2015 ◽  
Vol 22 (16) ◽  
pp. 12605-12614 ◽  
Author(s):  
Yu-Mei Wei ◽  
Jing-Qi Wang ◽  
Ting-Ting Liu ◽  
Wei-Wen Kong ◽  
Nan Chen ◽  
...  
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Surface Waters ◽  
Bacterial Communities ◽  
454 Pyrosequencing ◽  
Rrna Gene ◽  
The 16S Rrna Gene

scholarly journals The capacity of wastewater treatment plants drives bacterial community structure and its assembly

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Young Kyung Kim ◽  
Keunje Yoo ◽  
Min Sung Kim ◽  
Il Han ◽  
Minjoo Lee ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
Community Structure ◽  
Bacterial Community ◽  
Activated Sludge ◽  
Community Assembly ◽  
Bacterial Communities ◽  
Wastewater Treatment Plants ◽  
High Capacity ◽  
Operating Conditions ◽  
Rrna Gene

Abstract Bacterial communities in wastewater treatment plants (WWTPs) affect plant functionality through their role in the removal of pollutants from wastewater. Bacterial communities vary extensively based on plant operating conditions and influent characteristics. The capacity of WWTPs can also affect the bacterial community via variations in the organic or nutrient composition of the influent. Despite the importance considering capacity, the characteristics that control bacterial community assembly are largely unknown. In this study, we discovered that bacterial communities in WWTPs in Korea and Vietnam, which differ remarkably in capacity, exhibit unique structures and interactions that are governed mainly by the capacity of WWTPs. Bacterial communities were analysed using 16S rRNA gene sequencing and exhibited clear differences between the two regions, with these differences being most pronounced in activated sludge. We found that capacity contributed the most to bacterial interactions and community structure, whereas other factors had less impact. Co-occurrence network analysis showed that microorganisms from high-capacity WWTPs are more interrelated than those from low-capacity WWTPs, which corresponds to the tighter clustering of bacterial communities in Korea. These results will contribute to the understanding of bacterial community assembly in activated sludge processing.

scholarly journals A Grain-Based SARA Challenge Affects the Composition of Epimural and Mucosa-Associated Bacterial Communities throughout the Digestive Tract of Dairy Cows

Animals ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 1658
Author(s):  
Jan C. Plaizier ◽  
Anne-Mette Danscher ◽  
Paula A. Azevedo ◽  
Hooman Derakhshani ◽  
Pia H. Andersen ◽  
...  
Keyword(s):  
Digestive Tract ◽  
Relative Abundance ◽  
Bacterial Communities ◽  
Dry Matter ◽  
Control Diet ◽  
Rrna Gene ◽  
Ruminal Acidosis ◽  
Clustering Patterns ◽  
The 16S Rrna Gene ◽  
Distal Jejunum

The effects of a subacute ruminal acidosis (SARA) challenge on the composition of epimural and mucosa-associated bacterial communities throughout the digestive tract were determined in eight non-lactating Holstein cows. Treatments included feeding a control diet containing 19.6% dry matter (DM) starch and a SARA-challenge diet containing 33.3% DM starch for two days after a 4-day grain step-up. Subsequently, epithelial samples from the rumen and mucosa samples from the duodenum, proximal, middle and distal jejunum, ileum, cecum and colon were collected. Extracted DNA from these samples were analyzed using MiSeq Illumina sequencing of the V4 region of the 16S rRNA gene. Distinct clustering patterns for each diet existed for all sites. The SARA challenge decreased microbial diversity at all sites, with the exception of the middle jejunum. The SARA challenge also affected the relative abundances of several major phyla and genera at all sites but the magnitude of these effects differed among sites. In the rumen and colon, the largest effects were an increase in the relative abundance of Firmicutes and a reduction of Bacteroidetes. In the small intestine, the largest effect was an increase in the relative abundance of Actinobacteria. The grain-based SARA challenge conducted in this study did not only affect the composition and cause dysbiosis of epimural microbiota in the rumen, it also affected the mucosa-associated microbiota in the intestines. To assess the extent of this dysbiosis, its effects on the functionality of these microbiota must be determined in future.

Molecular characterization of the bacterial communities present in sheep's milk and cheese produced in South Brazilian Region via 16S rRNA gene metabarcoding sequencing

LWT ◽  
2021 ◽  
Vol 147 ◽  
pp. 111579
Author(s):  
Creciana M. Endres ◽  
Ícaro Maia S. Castro ◽  
Laura D. Trevisol ◽  
Juliana M. Severo ◽  
Michele B. Mann ◽  
...  
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Molecular Characterization ◽  
Bacterial Communities ◽  
Rrna Gene

scholarly journals The Role of Biochar in Regulating the Carbon, Phosphorus, and Nitrogen Cycles Exemplified by Soil Systems

2021 ◽  
Vol 13 (10) ◽  
pp. 5612
Author(s):  
Shu-Yuan Pan ◽  
Cheng-Di Dong ◽  
Jenn-Feng Su ◽  
Po-Yen Wang ◽  
Chiu-Wen Chen ◽  
...  
Keyword(s):  
Environmental Sustainability ◽  
Soil Amendment ◽  
Environmental Control ◽  
Current Knowledge ◽  
Soil Environment ◽  
Nitrogen And Phosphorus ◽  
Soil Systems ◽  
P Mineralization ◽  
Rich Material ◽  
Pyrolysis Of Biomass

Biochar is a carbon-rich material prepared from the pyrolysis of biomass under various conditions. Recently, biochar drew great attention due to its promising potential in climate change mitigation, soil amendment, and environmental control. Obviously, biochar can be a beneficial soil amendment in several ways including preventing nutrients loss due to leaching, increasing N and P mineralization, and enabling the microbial mediation of N2O and CO2 emissions. However, there are also conflicting reports on biochar effects, such as water logging and weathering induced change of surface properties that ultimately affects microbial growth and soil fertility. Despite the voluminous reports on soil and biochar properties, few studies have systematically addressed the effects of biochar on the sequestration of carbon, nitrogen, and phosphorus in soils. Information on microbially-mediated transformation of carbon (C), nitrogen (N), and phosphorus (P) species in the soil environment remains relatively uncertain. A systematic documentation of how biochar influences the fate and transport of carbon, phosphorus, and nitrogen in soil is crucial to promoting biochar applications toward environmental sustainability. This report first provides an overview on the adsorption of carbon, phosphorus, and nitrogen species on biochar, particularly in soil systems. Then, the biochar-mediated transformation of organic species, and the transport of carbon, nitrogen, and phosphorus in soil systems are discussed. This review also reports on the weathering process of biochar and implications in the soil environment. Lastly, the current knowledge gaps and priority research directions for the biochar-amended systems in the future are assessed. This review focuses on literatures published in the past decade (2009–2021) on the adsorption, degradation, transport, weathering, and transformation of C, N, and P species in soil systems with respect to biochar applications.

scholarly journals Application of the Conditional Nonlinear Optimal Perturbations Method in the Shallow Lake Ecological Degradation and Restoration

2015 ◽  
Vol 2015 ◽  
pp. 1-10 ◽  
Author(s):  
Bo Wang ◽  
Qianqian Qi
Keyword(s):  
Shallow Lake ◽  
Sediment Resuspension ◽  
Finite Amplitude ◽  
Water Transparency ◽  
Lake Ecosystem ◽  
Lake Ecosystems ◽  
Ecological Degradation ◽  
Parameter Condition ◽  
Restoration Model ◽  
Simple Combination

In the shallow lake ecosystems, the recovery of the aquatic macrophytes and the increase in the water transparency have been the main contents of the ecological restoration. Using the shallow lake ecological degradation and restoration model, CNOP method is adopted to discuss the instability and sensitivity of the ecosystem to the finite-amplitude perturbations related to the initial condition and the parameter condition. Results show that the linearly stable clear (turbid) water states can be nonlinearly unstable with the finite-amplitude perturbations, which represent the nature factors and the human activities such as the excessive harvest of the macrophytes and the sediment resuspension caused by artificially dynamic actions on the ecosystems. The results also support the viewpoint of Scheffer et al., whose emphasis is that the facilitation interactions between the submerged macrophytes and the water transparency are the main trigger for an occasional shift from a turbid to a clear state. Also, by the comparison with CNOP-I, CNOP-P, CNOP, and (CNOP-I, CNOP-P), results demonstrate that CNOP, which is not a simple combination of CNOP-I and CNOP-P, could induce the shallow lake ecosystem larger departure from the same ground state rather than CNOP-I, CNOP-P, and (CNOP-I, CNOP-P).

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