scholarly journals Faculty Opinions recommendation of Restoring Global Gene Regulation through Experimental Evolution Uncovers a NAP (Nucleoid-Associated Protein)-Like Behavior of Crp/Cap.

Author(s):  
Charles Dorman
mBio ◽  
2021 ◽  
Vol 12 (5) ◽  
Author(s):  
Sophia A. H. Heyde ◽  
Pernille O. Frendorf ◽  
Ida Lauritsen ◽  
Morten H. H. Nørholm

Here we report that mutations in the topA gene compensate for loss of cAMP, showing that the interplay between Crp and the supercoiling status of promoters is key to global stress response. Furthermore, we observed an effect of apoCrp on gene expression in the absence of its effector cAMP. This provides support for the proposed NAP-like role for Crp, suggesting that it represents an intermediate point in the evolution of a ligand-controlled TF from a NAP.


2018 ◽  
Vol 8 (6) ◽  
pp. 20180038 ◽  
Author(s):  
Nicolas M. Schmelling ◽  
Ilka M. Axmann

Precisely timing the regulation of gene expression by anticipating recurring environmental changes is a fundamental part of global gene regulation. Circadian clocks are one form of this regulation, which is found in both eukaryotes and prokaryotes, providing a fitness advantage for these organisms. Whereas many different eukaryotic groups harbour circadian clocks, cyanobacteria are the only known oxygenic phototrophic prokaryotes to regulate large parts of their genes in a circadian fashion. A decade of intensive research on the mechanisms and functionality using computational and mathematical approaches in addition to the detailed biochemical and biophysical understanding make this the best understood circadian clock. Here, we summarize the findings and insights into various parts of the cyanobacterial circadian clock made by mathematical modelling. These findings have implications for eukaryotic circadian research as well as synthetic biology harnessing the power and efficiency of global gene regulation.


Author(s):  
Haritha Adhikarla ◽  
Elsio A. Wunder ◽  
Ariel E. Mechaly ◽  
Sameet Mehta ◽  
Zheng Wang ◽  
...  

PLoS ONE ◽  
2014 ◽  
Vol 9 (4) ◽  
pp. e93587 ◽  
Author(s):  
Eun-Ji Hong ◽  
Joon-Song Park ◽  
Younhee Kim ◽  
Heung-Shick Lee

2014 ◽  
Vol 42 (18) ◽  
pp. 11291-11303 ◽  
Author(s):  
Eliza J.R. Peterson ◽  
David J. Reiss ◽  
Serdar Turkarslan ◽  
Kyle J. Minch ◽  
Tige Rustad ◽  
...  

2007 ◽  
Vol 104 (11) ◽  
pp. 4630-4635 ◽  
Author(s):  
M. T. Facciotti ◽  
D. J. Reiss ◽  
M. Pan ◽  
A. Kaur ◽  
M. Vuthoori ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document