scholarly journals Hubungan Kekerabatan Kultivar Talas (Colocasia esculenta) Berdasarkan Karakter Morfologi Organ Vegetatif (The Phenetic Relationship among Taro Cultivar (Colocasia esculenta) Based on Vegetative Morphological Characters)

2014 ◽  
Vol 4 (1) ◽  
Author(s):  
Hafsah Hafsah ◽  
Topik Hidayat ◽  
Kusdianti Kusdianti
Keyword(s):  
Computer Software ◽  
Morphological Characters ◽  
Colocasia Esculenta ◽  
Group Method ◽  
Dominant Position ◽  
Arithmetic Average ◽  
Pair Group ◽  
Close Relationship ◽  
Length Width ◽  
Vegetative Characters

Abstrak   Telah dilakukan penelitian mengenai hubungan kekerabatan pada delapan kultivar talas (Colocasia esculenta) berdasarkan karakter morfologi organ vegetatif. Kultivar-kultivar tersebut yakni talas kaliurang, burkok, bentul, bogor, sutra, kudo, lampung dan semir. Total karakter yang diamati berjumlah 35 karakter. Karakter-karakter tersebut kemudian dibuat skoring. Hasil skoring dianalisis dengan metode UPGMA (Unwight Pair Group Method with Arithmetic Average) menggunakan program komputer PAUP versi 4.0b10 sehingga terbentuk fenogram. Hasil penelitian menunjukkan variasi morfologi organ vegetatif yang cukup tinggi. Dari seluruh karakter, hanya lima karakter yang tidak menunjukkan adanya perbedaan. Karakter tersebut yaitu bentuk daun dan ujung daun, rasio panjang terhadap lebar daun, pola tepi pelepah dan posisi dominan bentuk helai daun tua. Dari fenogram diketahui bahwa seluruh kultivar yang diamati membentuk dua kelompok utama. Kelompok pertama terdiri dari kaliurang, burkok, bentul, bogor, lampung dan sutra, yang membentuk tiga subkelompok. Kelompok kedua terdiri dari kudo dan semir. Hasil analisis fenetik menunjukkan kultivar bogor dan lampung merupakan dua kultivar yang sangat dekat hubungan kekerabatannya dengan nilai kesamaan sebesar 80%. Kata kunci : Colocasia esculenta, fenetik, kultivar, organ vegetatif Abstract This research was conducted to find out relationship on eight cultivars of taro (Colocasia esculanta) based on vegetative morphological characters. They were kaliurang, burkok, bentul, bogor, sutra, kudo, lampung and semir. Total characters observed were 35 characters and the scoring  was also performed. In order to form a phenogram, the scoring then were analyzed using computer software PAUP version 4.0b10, the UPGMA method (Unwight Pair Group Method with Arithmetic Average). Results showed that morphological variation of vegetative characters are quite high. Of all the characters, only five characters that indicated any significant differences. These characters were leaves shape, leaves tip shape, length-width leaves ratio, midrib leaves, and dominant position of the old leaves. From the phenogram, it was known that all cultivars observed were form into two main groups. The first group consists of kaliurang, burkok, bentul, bogor, lampung and sutra, which formed three subgroups. The second group consists of kudo and semir. The results of the phenetic analysis showed the cultivar bogor and lampung are two cultivars that are very close relationship ties with the similarity value of 80%. Keywords : Colocasia esculenta , phenetic, cultivars, vegetative

scholarly journals Morphological variation of plantain squirrel Callosciurus notatus (Boddaert, 1785) (Rodentia: Sciuridae) population in West Sumatra, Indonesia

2020 ◽  
Vol 4 (2) ◽  
Author(s):  
Ruhama Maya Sari ◽  
Hon Tjong Djong ◽  
DEWI IMELDA ROESMA
Keyword(s):  
Morphological Variation ◽  
Measurement Data ◽  
Principal Component ◽  
Morphological Characters ◽  
Group Method ◽  
Morphometric Measurement ◽  
Arithmetic Average ◽  
Pair Group ◽  
Morphological Measurement ◽  
West Sumatra

Abstract. Tjong DH, Sari RM, Roesma DI. 2020. Morphological variation of plantain squirrel Callosciurus notatus (Boddaert, 1785) (Rodentia: Sciuridae) population in West Sumatra, Indonesia. Asian J For 21: 54-60. A study about the morphological variation of plantain squirrel among several populations in West Sumatra has been done in West Sumatra. There were 38 specimens of C. notatus collected from Padang, Lubuk Basung, Sangir, and Baso by using a survey and direct collection method. The morphometric measurement was conducted in the Laboratory of Genetic and Biomolecular, Department of Biology, Faculty of Mathematics and Natural Sciences, Andalas University. Morphological measurement data based on 21 external characters and 35 skull characters were analyzed by the Kruskall Wallis test, Principal Component Analysis (PCA), and Unweighted Pair Group Method Arithmetic Average (UPGMA). The result showed that there was morphological variation in ten body characters and nine skull characters. It is necessary to do further research to determine what environmental factors specifically influence certain morphological characters.

Leaf epidermal microcharacters of the Old World species of Lotus (Leguminosae: Loteae) and their systematic significance

2003 ◽  
Vol 51 (4) ◽  
pp. 459 ◽  
Author(s):  
Sebastián A. Stenglein ◽  
Marta N. Colares ◽  
Ana M. Arambarri ◽  
María C. Novoa ◽  
Claudia E. Vizcaíno ◽  
...  
Keyword(s):  
Morphological Characters ◽  
Data Matrix ◽  
Group Method ◽  
Old World ◽  
Pair Group ◽  
Phenetic Relationships ◽  
Close Relationship ◽  
Species Groups ◽  
Phylogenetic Hypotheses ◽  
Epidermal Features

Some perennial species of Lotus L. (Leguminosae: Loteae) from the Old World constitute an important forage resource. The epidermal microcharacters of 15 species belonging to the Old World Lotus angustissimus L., L. corniculatus L., L. creticus L. and L. peregrinus L. groups were described to compute the phenetic relationships, and to compare these results with previous classifications and phylogenetic hypotheses. Data on epidermal cells, stomata, stomatal indeces and trichomes were recorded and summarised in tables and illustrations. To test the taxonomic value of epidermal features and to establish the phenetic relationships, two numerical analyses were performed. Phenograms by the unweighted pair-group method (UPGMA) of clustering were generated. Results of the numerical analysis using a basic data matrix (15 operational taxonomic units × 15 epidermal characters) suggested that epidermal characteristics make it possible to establish species' and species groups' relationships; however, they were not totally coincident with previous classifications. An additional analysis using epidermal characters plus other morphological characters from leaves, flowers, fruits and seeds led to establish species' and species groups' relationships. Results generated by the latter analysis demonstrated that epidermal traits, together with other characters, are useful and informative for testing species clustering. Phenetic results coincide with earlier classifications and chromosome-number studies and accord well with a previous phylogenetic hypothesis in showing the close relationship among species of the Old World Lotus groups included in this study.

scholarly journals Genetic Diversity Among Some Walnut (Juglans regia L.) Genotypes by SSR Markers

2021 ◽  
Vol 13 (12) ◽  
pp. 6830
Author(s):  
Murat Guney ◽  
Salih Kafkas ◽  
Hakan Keles ◽  
Mozhgan Zarifikhosroshahi ◽  
Muhammet Ali Gundesli ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Plant Genetic Resources ◽  
Juglans Regia ◽  
Genetic Distances ◽  
Mean Value ◽  
Central Anatolia ◽  
Group Method ◽  
Arithmetic Average ◽  
Pair Group ◽  
Principal Coordinates

The food needs for increasing population, climatic changes, urbanization and industrialization, along with the destruction of forests, are the main challenges of modern life. Therefore, it is very important to evaluate plant genetic resources in order to cope with these problems. Therefore, in this study, a set of ninety-one walnut (Juglans regia L.) accessions from Central Anatolia region, composed of seventy-four accessions and eight commercial cultivars from Turkey, and nine international reference cultivars, was analyzed using 45 SSR (Simple Sequence Repeats) markers to reveal the genetic diversity. SSR analysis identified 390 alleles for 91 accessions. The number of alleles per locus ranged from 3 to 19 alleles with a mean value of 9 alleles per locus. Genetic dissimilarity coefficients ranged from 0.03 to 0.68. The highest number of alleles was obtained from CUJRA212 locus (Na = 19). The values of polymorphism information content (PIC) ranged from 0.42 (JRHR222528) to 0.86 (CUJRA212) with a mean PIC value of 0.68. Genetic distances were estimated according to the UPGMA (Unweighted Pair Group Method with Arithmetic Average), Principal Coordinates (PCoA), and the Structure-based clustering. The UPGMA and Structure clustering of the accessions depicted five major clusters supporting the PCoA results. The dendrogram revealed the similarities and dissimilarities among the accessions by identifying five major clusters. Based on this study, SSR analyses indicate that Yozgat province has an important genetic diversity pool and rich genetic variance of walnuts.

scholarly journals Optimal use of SSR markers for varietal identification of upland cotton

2015 ◽  
Vol 50 (7) ◽  
pp. 571-581 ◽  
Author(s):  
Guilherme da Silva Pereira ◽  
Ana Luíza Ramos Cazé ◽  
Michelle Garcia da Silva ◽  
Vanessa Cavalcante Almeida ◽  
Fernanda Oliveira da Cunha Magalhães ◽  
...  
Keyword(s):  
Genetic Distance ◽  
Ssr Markers ◽  
Polymorphic Information Content ◽  
Group Method ◽  
Discrimination Power ◽  
Arithmetic Average ◽  
Pair Group ◽  
Varietal Identification ◽  
The World ◽  
The Mean

Abstract: The objective of this work was to identify polymorphic simple sequence repeat (SSR) markers for varietal identification of cotton and evaluation of the genetic distance among the varieties. Initially, 92 SSR markers were genotyped in 20 Brazilian cotton cultivars. Of this total, 38 loci were polymorphic, two of which were amplified by one primer pair; the mean number of alleles per locus was 2.2. The values of polymorphic information content (PIC) and discrimination power (DP) were, on average, 0.374 and 0.433, respectively. The mean genetic distance was 0.397 (minimum of 0.092 and maximum of 0.641). A panel of 96 varieties originating from different regions of the world was assessed by 21 polymorphic loci derived from 17 selected primer pairs. Among these varieties, the mean genetic distance was 0.387 (minimum of 0 and maximum of 0.786). The dendrograms generated by the unweighted pair group method with arithmetic average (UPGMA) did not reflect the regions of Brazil (20 genotypes) or around the world (96 genotypes), where the varieties or lines were selected. Bootstrap resampling shows that genotype identification is viable with 19 loci. The polymorphic markers evaluated are useful to perform varietal identification in a large panel of cotton varieties and may be applied in studies of the species diversity.

AFLP-based assessment of genetic diversity among nine alfalfa germplasms using bulk DNA templates

Genome ◽  
2003 ◽  
Vol 46 (1) ◽  
pp. 51-58 ◽  
Author(s):  
A Segovia-Lerma ◽  
R G Cantrell ◽  
J M Conway ◽  
I M Ray
Keyword(s):  
Genetic Diversity ◽  
Medicago Sativa ◽  
High Throughput ◽  
Genetic Distances ◽  
Group Method ◽  
Aflp Analysis ◽  
Dna Templates ◽  
Arithmetic Average ◽  
Pair Group ◽  
Large Numbers

Improving commercial utilization of perennial Medicago collections requires developing approaches that can rapidly and accurately characterize genetic diversity among large numbers of populations. This study evaluated the potential of using amplified fragment length polymorphism (AFLP) DNA markers, in combination with DNA bulking over multiple genotypes, as a strategy for high-throughput characterization of genetic distances (D) among alfalfa (Medicago sativa L.) accessions. Bulked DNA templates from 30 genotypes within each of nine well-recognized germplasms (African, Chilean, Flemish, Indian, Ladak, Medicago sativa subsp. falcata, Medicago sativa subsp. varia, Peruvian, and Turkistan) were evaluated using 34 primer combinations. A total of 3754 fragments were identified, of which 1541 were polymorphic. The number of polymorphic fragments detected per primer combination ranged from 20 to 85. Pairwise D estimates among the nine germplasms ranged from 0.52 to 1.46 with M. sativa subsp. falcata being the most genetically dissimilar. Unweighted pair-group method arithmetic average (UPGMA) analysis of the marker data produced two main clusters, (i) M. sativa subsp. sativa and M. sativa subsp. varia, and (ii) M. sativa subsp. falcata. Cluster-analysis results and D estimates among the Chilean, Peruvian, Flemish, and M. sativa subsp. varia germplasms supported the hypothesis that Peruvian was more similar to original Spanish introductions into Central and South America than Chilean. Hierarchical arrangement of the nine germplasms was supported by their respective geographic, subspecific, and intersubspecific hybrid origins. Subsets of as few as seven highly informative primer pairs were identified that produced comparable D estimates and similar heirarchical arrangements compared with the complete dataset. The results indicate that use of primer-pair subsets for AFLP analysis of bulk DNA templates could serve as a high-throughput system for accurately characterizing genetic diversity among large numbers of alfalfa populations.Key words: Medicago sativa, DNA bulking, genetic distance.

scholarly journals Partial diallel and genetic divergence analyses in maize inbred lines

2020 ◽  
Vol 43 ◽  
pp. e53540
Author(s):  
Maria Fernanda de Souza Dias Maioli ◽  
Ronald José Barth Pinto ◽  
Tereza Aparecida da Silva ◽  
Diego Ary Rizzardi ◽  
Robson Akira Matsuzaki ◽  
...  
Keyword(s):  
Grain Yield ◽  
Genetic Divergence ◽  
Block Design ◽  
Inbred Lines ◽  
Group Method ◽  
Arithmetic Average ◽  
Pair Group ◽  
Maize Inbred Lines ◽  
Randomized Block Design ◽  
Partial Diallel

In this study, we aimed to estimate general and specific combining abilities (GCA and SCA, respectively) and to verify genetic divergence (Rogers distance, Unweighted Pair-Group Method Using Arithmetic Average - UPGMA) using microsatellite markers in maize inbred lines. Using a partial diallel scheme, a total of 19 inbred lines were crossed as (9 x 10), which were derived from the single hybrids SG6015 and P30F53, respectively. The 90 hybrids were evaluated in an incomplete randomized block design with common checks and three replications during the 2017-2018 growing season. Flowering time, average plant height, ear height insertion, average ear diameter, ear length, number of lodged and broken plants, mass of 100 grains and grain yield were measured. According to the analysis of variance, GCA, and SCA were significant (p < 0.05) in all the measured traits; inbred line B as well as 1 and 8, derived from the single hybrids SG6015 and P30F53, respectively, were selected due to their higher GCA values in grain yield to be used in crosses as testers, while the single cross hybrid (B x 1) was selected due to their higher SCA value in grain yield to be used in future breeding programs. The molecular marker analysis divided the inbred lines into two groups, where the highest dissimilarity (0.74) was observed between lines A and 9; however, these did not result in a high SCA value, therefore the hybrids obtained by such crossings were not selected for grain yield.

scholarly journals Assessment of Genetic Relationships among Philodendron Cultivars Using AFLP Markers

2004 ◽  
Vol 129 (5) ◽  
pp. 690-697 ◽  
Author(s):  
Pachanoor S. Devanand ◽  
Jianjun Chen ◽  
Richard J. Henny ◽  
Chih-Cheng T. Chao
Keyword(s):  
Genetic Similarity ◽  
Near Infrared ◽  
Genetic Relationships ◽  
Aflp Markers ◽  
Group Method ◽  
Limited Information ◽  
Similarity Coefficients ◽  
Arithmetic Average ◽  
Ornamental Foliage Plants ◽  
Pair Group

Philodendrons (Philodendron Schott) are among the most popular tropical ornamental foliage plants used for interior decoration. However, limited information is available on the genetic relationships among popular Philodendron species and cultivars. This study analyzed genetic similarity of 43 cultivars across 15 species using amplified fragment length polymorphism (AFLP) markers with near infrared fluorescence labeled primers. Forty-eight EcoR I + 2/Mse I + 3 primer set combinations were screened, from which six primer sets were selected and used in this investigation. Each selected primer set generated 96 to 130 scorable fragments. A total of 664 AFLP fragments were detected, of which 424 (64%) were polymorphic. All cultivars were clearly differentiated by their AFLP fingerprints, and the relationships were analyzed using the unweighted pair-group method of arithmetic average cluster analysis (UPGMA) and principal coordinated analysis (PCA). The 43 cultivars were divided into five clusters. Cluster I comprises eight cultivars with arborescent growth style. Cluster II has only one cultivar, `Goeldii'. There are 16 cultivars in cluster III, and most of them are self-heading interspecific hybrids originated from R.H. McColley's breeding program in Apopka, Fla. Cluster IV contains 13 cultivars that exhibit semi-vining growth style. Cluster V has five cultivars that are true vining in morphology, and they have lowest genetic similarity with philodendrons in other clusters. Cultivated philodendrons are generally genetically diverse except the self-heading hybrids in cluster III that were mainly developed using self-heading and semi-vining species as parents. Seven hybrid cultivars have Jaccard's similarity coefficients of 0.88 or higher, suggesting that future hybrid development needs to select parents with diverse genetic backgrounds.

scholarly journals Lemons: Diversity and Relationships with Selected Citrus Genotypes as Measured with Nuclear Genome Markers

2001 ◽  
Vol 126 (3) ◽  
pp. 309-317 ◽  
Author(s):  
O. Gulsen ◽  
M.L. Roose
Keyword(s):  
Simple Sequence Repeats ◽  
Phylogenetic Trees ◽  
Nuclear Genome ◽  
Group Method ◽  
Arithmetic Average ◽  
Pair Group ◽  
Inter Simple Sequence Repeats ◽  
Ssr Loci ◽  
High Level ◽  
Simple Sequence

Inter-simple sequence repeats (ISSR), simple sequence repeats (SSR) and isozymes were used to measure genetic diversity and phylogenetic relationships among 95 Citrus L. accessions including 57 lemons [C. limon (L.) Burm. f.], related taxa, and three proposed ancestral species, C. maxima (Burm.) Merrill (pummelo), C. medica L. (citron), and C. reticulata Blanco (mandarin). The ancestry of lemons and several other suspected hybrids was also studied. Five isozyme and five SSR loci revealed relatively little variation among most lemons, but a high level of variation among the relatively distant Citrus taxa. Eight ISSR primers amplified a total of 103 polymorphic fragments among the 83 accessions. Similarity matrices were calculated and phylogenetic trees derived using unweighted pair-group method, arithmetic average cluster analysis. All lemons, rough lemons, and sweet lemons, as well as some other suspected hybrids, clustered with citrons. Most lemons (68%) had nearly identical marker phenotypes, suggesting they originated from a single clonal parent via a series of mutations. Citrons contributed the largest part of the lemon genome and a major part of the genomes of rough lemons, sweet lemons, and sweet limes. Bands that characterize C. reticulata and C. maxima were detected in lemons, suggesting that these taxa also contributed to the pedigree of lemon.

Numerical taxonomy contributes to delimitation of Iranian and Turkish Hesperis L. (Brassicaceae) species

Phytotaxa ◽  
2018 ◽  
Vol 367 (2) ◽  
pp. 101 ◽  
Author(s):  
ATENA ESLAMI FAROUJI ◽  
HAMED KHODAYARI ◽  
MOSTAFA ASSADI ◽  
BARIŞ ÖZÜDOĞRU ◽  
ÖZLEM ÇETIN ◽  
...  
Keyword(s):  
Distance Matrix ◽  
Morphological Characters ◽  
Resolving Power ◽  
Group Method ◽  
Morphological Descriptors ◽  
Operational Taxonomic Units ◽  
Pair Group ◽  
Species Circumscription ◽  
Taxonomic Descriptions ◽  
Brassicaceae Species

Taxonomic descriptions of Iranian and Turkish Hesperis (Brassicaceae) species are generally insufficient and partly incomplete, which makes the species delimitation ambiguous. In order to clarify species circumscription, we scored 57 morphological descriptors (MDs) in 121 operational taxonomic units (OTUs) of Hesperis from Iran and Turkey and performed a multivariate analysis. The dendrogram was created from Gower’s distance matrix using Unweighted Pair Group Method with arithmetic mean (UPGMA) algorithm. The dendrogram clearly separates the 121 OTUs of Hesperis into five main phenons, which significantly deviate from the classical taxonomic treatment (sectional assignments) of the genus. Similar distinct delineation among the five phenons was revealed by a Principal Coordinate Analysis (PCoA), highlighting the resolving power of the multivariate analyses of quantitative and qualitative morphological characters. While there were significant variations among the OTUs for 57 MDs, the most distinctive morphological descriptors delimiting the phenons were estimated to be fruit, petal, stem, and leaf by a de-trended correspondence analysis (DCA). We also present a comparative discussion between the classical taxonomy and the delimitation of taxa revealed in our study.

scholarly journals Investigating the Spatiotemporal Genetic Structure of Phytophthora capsici in Michigan

2001 ◽  
Vol 91 (10) ◽  
pp. 973-980 ◽  
Author(s):  
K. H. Lamour ◽  
M. K. Hausbeck
Keyword(s):  
Fragment Length Polymorphism ◽  
Aflp Marker ◽  
Phytophthora Capsici ◽  
Group Method ◽  
Analysis Of Molecular Variance ◽  
Arithmetic Average ◽  
Pair Group ◽  
Average Cluster ◽  
Over Time ◽  
F Statistics

Phytophthora capsici isolates were recovered from pepper and cucurbit hosts at seven locations in Michigan from 1998 to 2000. Isolates were characterized for compatibility type (CT), mefenoxam sensitivity (MS), and amplified fragment length polymorphism (AFLP) marker profiles. In total, 94 AFLP bands were resolved. Individual populations were highly variable. Within populations, 39 to 49% of the AFLP bands were polymorphic and estimated heterozygosities ranged from 0.16 to 0.19. Of the 646 isolates fingerprinted, 70% (454) had unique AFLP profiles. No clones were recovered between years or locations. Pairwise F statistics (ΦST) between populations from different locations ranged from 0.18 to 0.40. A tree based on unweighted pair-group method with arithmetic average cluster analysis indicates discrete clusters based on location. Isolates from the same location showed no clustering based on the year of sampling. Analysis of molecular variance partitioned variability among (40%) and within populations (60%). The overall estimated ΦST was 0.34 (SD = 0.03). A1/A2 CT ratios were ≈1:1, and MS frequencies were similar between years for the two locations sampled over time. These data suggest that P. capsici persists in discrete outcrossing populations and that gene flow among locations in Michigan is infrequent.

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