scholarly journals Formation of Phosphorus Monoxide (PO) in the Interstellar Medium: Insights from Quantum-chemical and Kinetic Calculations

2021 ◽  
Vol 922 (2) ◽  
pp. 169
Author(s):  
Juan García de la Concepción ◽  
Cristina Puzzarini ◽  
Vincenzo Barone ◽  
Izaskun Jiménez-Serra ◽  
Octavio Roncero

Abstract In recent years, phosphorus monoxide (PO), an important molecule for prebiotic chemistry, has been detected in star-forming regions and in the comet 67P/Churyumov-Gerasimenko. These studies have revealed that, in the interstellar medium (ISM), PO is systematically the most abundant P-bearing species, with abundances that are about one to three times greater than those derived for phosphorus nitride (PN), the second-most abundant P-containing molecule. The reason why PO is more abundant than PN remains still unclear. Experimental studies with phosphorus in the gas phase are not available, probably because of the difficulties in dealing with its compounds. Therefore, the reactivity of atomic phosphorus needs to be investigated using reliable computational tools. To this end, state-of-the-art quantum-chemical computations have been employed to evaluate accurate reaction rates and branching ratios for the P + OH → PO + H and P + H2O → PO + H2 reactions in the framework of a master equation approach based on ab initio transition state theory. The hypothesis that OH and H2O can be potential oxidizing agents of atomic phosphorus is based on the ubiquitous presence of H2O in the ISM. Its destruction then produces OH, which is another very abundant species. While the reaction of atomic phosphorus in its ground state with water is not a relevant source of PO because of emerged energy barriers, the P + OH reaction represents an important formation route of PO in the ISM. Our kinetic results show that this reaction follows an Arrhenius–Kooij behavior, and thus its rate coefficients (α = 2.28 × 10−10 cm3 molecule−1 s−1, β = 0.16 and γ = 0.37 K) increase by increasing the temperature.

Author(s):  
Helen Roberts ◽  
T.J Millar

Observations of molecular D/H ratios in the interstellar medium are used to probe the physical conditions, such as temperature, ionization fraction and the importance of gas–grain reactions. In cold, dense regions, such as cores which are collapsing to form stars, the level of deuterium fractionation depends on the conversion of into its deuterated isotopologues (H 2 D + , D 2 H + and ). The relative abundances of these molecules uniquely probe the centres of these cores where other, heavier, species have frozen onto dust grains. We present models of the deuterium chemistry close to the centre of a pre-stellar core, in the last stage before the star forms, showing the dependence of the observable molecular D/H ratios on the physical parameters and rate coefficients that are assumed. We compare model predictions with the latest observations of these regions.


2019 ◽  
Vol 490 (2) ◽  
pp. 2178-2182 ◽  
Author(s):  
N Bouhafs ◽  
A Bacmann ◽  
A Faure ◽  
F Lique

ABSTRACT Accurate estimation of the abundance of the NH2 radical in the interstellar medium requires accurate radiative and collisional rate coefficients. The calculation of hyperfine-resolved rate coefficients for the collisional (de-)excitation of NH2 by both ortho- and para-H2 is presented in this work. Hyperfine-resolved rate coefficients are calculated from pure rotational close-coupling rate coefficients using the Mj randomizing approximation. Rate coefficients for temperatures ranging from 5 to 150 K were computed for all hyperfine transitions among the first 15 rotational energy levels of both ortho- and para-NH2 in collisions with ortho- and para-H2. The new data were then employed in radiative transfer calculations to simulate the excitation of NH2 in typical star-forming regions such as W31C, where NH2 is seen in emission. We compared the excitation and brightness temperatures for different NH2 transitions obtained using the new and the previously available collisional data. It is found that the new rate coefficients increase the simulated line intensities by a factor ∼10–30. As a consequence, NH2 abundance derived from the observations will be significantly reduced by the use of the present rate coefficients.


1999 ◽  
Vol 16 (1) ◽  
pp. 106-112 ◽  
Author(s):  
Fabian Walter

AbstractHigh resolution HI observations of nearby dwarf galaxies (most of which are situated in the M81 group at a distance of about 3·2 Mpc) reveal that their neutral interstellar medium (ISM) is dominated by hole-like features most of which are expanding. A comparison of the physical properties of these holes with the ones found in more massive spiral galaxies (such as M31 and M33) shows that they tend to reach much larger sizes in dwarf galaxies. This can be understood in terms of the galaxy's gravitational potential. The origin of these features is still a matter of debate. In general, young star forming regions (OB-associations) are held responsible for their formation. This picture, however, is not without its critics and other mechanisms such as the infall of high velocity clouds, turbulent motions or even gamma ray bursters have been recently proposed. Here I will present one example of a supergiant shell in IC 2574 which corroborates the picture that OB associations are indeed creating these structures. This particular supergiant shell is currently the most promising case to study the effects of the combined effects of stellar winds and supernova explosions which shape the neutral interstellar medium of (dwarf) galaxies.


2020 ◽  
Author(s):  
Zoi Salta ◽  
Jacopo Lupi ◽  
Vincenzo Barone ◽  
Oscar Ventura

<div> Elucidation of the oxidation mechanism of naturally emitted reduced sulfur compounds, especially dimethyl sulfide, plays a central role in understanding background acid precipitation in the natural environment. Most frequently, theoretical studies of the addition and H-elimination reactions of dimethyl sulfide with hydroxyl radicals are studied considering the presence of oxygen that further reacts with the radicals formed in the initial steps. Although the reaction of intermediate species with additional hydroxyl radicals has been considered as part of the global mechanism of oxidation, few if any attention has been dedicated to the possibility of reactions of the initial radicals with a second •OH molecule. In this work we performed a computational study using quantum-chemical methods, of the mechanism of H-abstraction from dimethyl sulfide under normal atmospheric conditions and in reaction chambers at different O2 partial pressure, including complete absence of oxygen. Additionally, important rate coefficients were computed using canonical and variational transition state theory. The rate coefficient for abstraction affords a 4.72 x 10-12 cm3 molecule1 s-1 value, very close to the most recent experimental one (4.13 x 10-12 cm3 molecule-1 s-1). According to our best results, the initial methyl thiomethyl radical was obtained at -25.2 kcal/mol (experimentally -22.4 kcal/mol), and four important paths were identified on the potential energy surface. From the interplay of thermochemical and kinetic arguments, it was possible to demonstrate that the preferred product of the reaction of dimethyl sulfide with two hydroxyl radicals, is actually dimethyl sulfoxide. </div><div> </div>


2001 ◽  
Vol 34 (4) ◽  
pp. 563-679 ◽  
Author(s):  
Arieh Warshel ◽  
William W. Parson

1. Introduction 5632. Obtaining rate constants from molecular-dynamics simulations 5642.1 General relationships between quantum electronic structures and reaction rates 5642.2 The transition-state theory (TST) 5692.3 The transmission coefficient 5723. Simulating biological electron-transfer reactions 5753.1 Semi-classical surface-hopping and the Marcus equation 5753.2 Treating quantum mechanical nuclear tunneling by the dispersed-polaron/spin-boson method 5803.3 Density-matrix treatments 5833.4 Charge separation in photosynthetic bacterial reaction centers 5844. Light-induced photoisomerizations in rhodopsin and bacteriorhodopsin 5965. Energetics and dynamics of enzyme reactions 6145.1 The empirical-valence-bond treatment and free-energy perturbation methods 6145.2 Activation energies are decreased in enzymes relative to solution, often by electrostatic effects that stabilize the transition state 6205.3 Entropic effects in enzyme catalysis 6275.4 What is meant by dynamical contributions to catalysis? 6345.5 Transmission coefficients are similar for corresponding reactions in enzymes and water 6365.6 Non-equilibrium solvation effects contribute to catalysis mainly through Δg[Dagger], not the transmission coefficient 6415.7 Vibrationally assisted nuclear tunneling in enzyme catalysis 6485.8 Diffusive processes in enzyme reactions and transmembrane channels 6516. Concluding remarks 6587. Acknowledgements 6588. References 658Obtaining a detailed understanding of the dynamics of a biochemical reaction is a formidable challenge. Indeed, it might appear at first sight that reactions in proteins are too complex to analyze microscopically. At room temperature, even a relatively small protein can have as many as 1034 accessible conformational states (Dill, 1985). In many cases, however, we have detailed structural information about the active site of an enzyme, whereas such information is missing for corresponding chemical systems in solution. The atomic coordinates of the chromophore in bacteriorhodopsin, for example, are known to a resolution of 1–2 Å. In addition, experimental studies of biological processes such as photoisomerization and electron transfer have provided a wealth of detailed information that eventually may make some of these processes classical problems in chemical physics as well as biology.


1996 ◽  
Vol 157 ◽  
pp. 111-113
Author(s):  
P. Martin ◽  
J. Belley

AbstractImaging spectrophotometry in the main nebular lines has been performed on 65 H ɪɪ regions in the ringed galaxy NGC 4736. O/H abundances were derived using the line ratios [O ɪɪɪ]/Hβ and [N ɪɪ]/[O ɪɪɪ] calibrated by Edmunds & Pagel (1984). We show that the O/H scatter in the resonance ring of star forming regions is small, no greater than normally expected in the well-mixed ISM of disks of gas-rich galaxies. The global O/H gradient (−0.046 dex/kpc) in the disk of NGC 4736 is shallower than gradients of normal spirals but comparable to gradients observed in weakly barred spirals. This last result could indicate that radial mixing is or was present in NGC 4736. The oval distortion in the central regions can be responsible for this homogenization but it is also possible that a strong bar was present in the past.


2020 ◽  
Author(s):  
Mark Goldman ◽  
Nathan Wa-Wai Yee ◽  
Jesse Kroll ◽  
William H. Green

Bio-derived isobutanol has been approved as a gasoline additive in the U.S., but our understanding of its combustion chemistry still has significant uncertainties. Detailed quantum calculations could improve model accuracy leading to better estimation of isobutanol’s combustion properties and its environmental impacts. This work examines 47 molecules and 38 reactions involved in the first oxygen addition to isobutanol’s three alkyl radicals located α, β, and γ to the hydroxide. Quantum calculations are mostly done at CCSD(T)-F12/cc-pVTZ-F12//B3LYP/CBSB7, with 1-D hindered rotor corrections obtained at B3LYP/6-31G(d). The resulting potential energy surfaces are the most comprehensive isobutanol peroxy networks published to date. Canonical transition state theory and a 1-D microcanonical master equation are used to derive high-pressure-limit and pressure-dependent rate coefficients, respectively. At all conditions studied, the recombination of α- isobutanol radical with O2 forms HO2 and isobutanal. The recombination of γ-isobutanol radical with O2 forms a stabilized hydroperoxy alkyl radical below 400 K, water and an alkoxy radical at higher temperatures, and HO2 and an alkene above 1200 K. The recombination of β-isobutanol radical with O2 results in a mixture of products between 700-1100 K, forming acetone, formaldehyde and OH at lower temperatures and forming HO2 and alkenes at higher temperatures. The barrier heights, high-pressure-limit rates, and pressure-dependent kinetics generally agree with the results from previous quantum chemistry calculations. Six reaction rates in this work deviate by over three orders of magnitude from kinetics in detailed models of isobutanol combustion, suggesting the rates calculated here can help improve modeling of isobutanol combustion and its environmental fate.


2018 ◽  
Author(s):  
◽  
Bradley W. Mills

"[ACCESS RESTRICTED TO THE UNIVERSITY OF MISSOURI AT AUTHOR'S REQUEST.] It is now well recognized that the interstellar medium acts as an efficient polarizer of electromagnetic radiation, resulting in the partial plane polarization of starlight by dichroic absorption by aligned, non-spherical dust grains on the line of sight. The discovery of the linear polarization of starlight provided a valuable mechanism for constraining the physical properties of interstellar dust, requiring the need for a grain population which both departs from spherical symmetry and efficiently aligns with the galactic magnetic field. Observations of light from distant stars have shown the degree of polarization to scale with reddening, suggesting that the grains which are responsible for effectively absorbing and scattering electromagnetic radiation are also responsible for the partial plane polarization of the transmitted light. The exact chemical and physical nature of interstellar dust remains a point of contention, being generally recognized to consist of both amorphous silicate and carbonaceous material. Grain models consisting of bare and separated silicate and carbon, silicates covered with a mantle of carbonaceous dust and porous composites of small silicates and carbonaceous particles have been invoked to explain the main observational constraints, most notably being the observed wavelength dependent extinction, polarization and far infrared emission. While each dust model appears to be consistent in explaining such constraints, each makes unique assumptions regarding the physical relationship of the main dust forming components, with no further methods of differentiating between such models being discussed. Spectropolarimetric observations across solid state absorption features have recently provided a means in which to distinguish between dust models. The core-mantle model of interstellar dust postulates a grain morphology consisting of an amorphous silicate core coated by (i.e., being physically associated with) a mantle of water ice, or carbonaceous material, being dependent on the environment in which the grain resides. For spectral features whose carrier resides in the mantle atop an elongated silicate core, a correlation between the polarization profiles of such features is expected with that of the silicate. Two studies are proposed: (i) Spectroscopic observations of dense, star forming regions from 2 to 13 µm have been carried out for several young, high luminosity infrared sources, protostars. The 3.1 µm feature, attributed to absorption by amorphous H2O ice, and 9.7 µm feature, attributed to absorption by amorphous silicates, appear concurrently in all sources with molecular clouds intervening along the line of sight, indicative of both ice and silicates as important grain constitutes in dense phases of the interstellar medium. Freeze out of gas phase elements onto refractory grain cores result in a silicate core-ice mantle grain morphology. Spectropolarimetric observations of the Becklin-Neugebauer (BN) object have shown the 3.1 µm and 9.7 µm features to be polarized, highly suggestive of an aligned silicate core-ice mantle grain morphology present on the line of sight. Subsequent observations of a source similar in nature to BN, the embedded protostar AFGL 2591, have raised a challenge to this model, with excess polarization detected in the 9.7 µm absorption band, combined with a 3.1 µm ice band feature being devoid of polarization. A model which physically associates the carrier material of the ice feature with that of an aligned silicate component requires a polarization signature across the 3.1 µm feature commensurate with that of the silicate feature. We seek to alleviate this challenge on the coreâ€""mantle model by computing the degree of polarization across both the 3.1 µm ice and 9.7 µm silicate features for spheroidal silicate core-spherical ice core-mantle grains; on the basis that grains with spherical mantles, being much less elongated in nature, should reduce the degree of polarization across the ice feature. By considering variations in specific grain parameters, including variations in core elongation and mantle thickness, we seek to reduce the degree of 3.1 µm polarization while simultaneously reproducing 9.7 µm spectropolarimetric observations. Such constraints provide a valuable test of the physical relationship of silicate and ice components in star forming regions. (ii)Spectroscopic observations from 2 to 13 µm have been carried out on multi- ple lines of sight which sample the diffuse interstellar medium. Absorption features at 3.4 µm, attributed to carbonaceous material, and 9.7 µm, attributed to amorphous silicates are indicative of both carbon and silicates materials as important grain constitutes. Spectropolarimetric observations have shown the 9.7 µm feature to be polarized, suggesting highly aligned silicate grains present on the line of sight. Subsequent observations of the 3.4 µm feature on the same Galactic sightlines have shown a carbonaceous dust feature to be devoid of polarization. A model which physically associates the carrier material of the carbonaceous feature with that of an aligned silicate component requires a polarization signature across the 3.4 µm feature commensurate with that of the silicate feature. No such excess rise is currently detected, indicative of a carbonaceous component being devoid of polarization. We seek to alleviate this challenge on the core-mantle model by computing the degree of polarization across both the 3.4 µm carbonaceous and 9.7 µm silicate features for spheroidal silicate core -'equal-thickness' carbonaceous core-mantle grains; on the basis that grains with equal thickness mantles should reduce the degree of polarization associated with the carbonaceous feature, a result of equal attenuation of light along both the grains semi-major and semi-minor axis. By considering variations in specific grain parameters, including variations in core elongation and mantle thickness, we seek to reduce the degree of 3.4 µm polarization while simultaneously reproducing both 9.7 µm and optical (0.55µm) spectropolarimetric observations. Such constraints provide a valuable test of the physical relationship of silicate and carbonaceous dust components in diffuse regions of the interstellar medium."


2006 ◽  
Vol 361 (1472) ◽  
pp. 1375-1386 ◽  
Author(s):  
Michael J Sutcliffe ◽  
Laura Masgrau ◽  
Anna Roujeinikova ◽  
Linus O Johannissen ◽  
Parvinder Hothi ◽  
...  

It is now widely accepted that enzyme-catalysed C–H bond breakage occurs by quantum mechanical tunnelling. This paradigm shift in the conceptual framework for these reactions away from semi-classical transition state theory (TST, i.e. including zero-point energy, but with no tunnelling correction) has been driven over the recent years by experimental studies of the temperature dependence of kinetic isotope effects (KIEs) for these reactions in a range of enzymes, including the tryptophan tryptophylquinone-dependent enzymes such as methylamine dehydrogenase and aromatic amine dehydrogenase, and the flavoenzymes such as morphinone reductase and pentaerythritol tetranitrate reductase, which produced observations that are also inconsistent with the simple Bell-correction model of tunnelling. However, these data—especially, the strong temperature dependence of reaction rates and the variable temperature dependence of KIEs—are consistent with other tunnelling models (termed full tunnelling models), in which protein and/or substrate fluctuations generate a configuration compatible with tunnelling. These models accommodate substrate/protein (environment) fluctuations required to attain a configuration with degenerate nuclear quantum states and, when necessary, motion required to increase the probability of tunnelling in these states. Furthermore, tunnelling mechanisms in enzymes are supported by atomistic computational studies performed within the framework of modern TST, which incorporates quantum nuclear effects.


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