scholarly journals Detection of arbuscular mycorrhizal fungi associated with pecan (Carya illinoinensis) trees by molecular and morphological approaches

MycoKeys ◽  
2018 ◽  
Vol 42 ◽  
pp. 73-88 ◽  
Author(s):  
L. Fernández Bidondo ◽  
R. P. Colombo ◽  
M. Recchi ◽  
V. A. Silvani ◽  
M. Pérgola ◽  
...  
Keyword(s):  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Sequence Similarity ◽  
Arbuscular Mycorrhizal ◽  
Soil Disturbance ◽  
Fungal Species ◽  
Fungal Community Composition ◽  
Molecular Approaches ◽  
Field Samples ◽  
Fungal Specificity

Arbuscular mycorrhizal (AM) fungal community associated with pecan (Caryaillinoinensis) roots and rhizospheric soils was assessed by spore isolation and morphological characterisation and by pyrosequencing of AM molecular markers. The AM fungal community associated with pecan growing in the field, was always more diverse than that associated with pecan growing in containers. This was not observed when AM richness was studied, suggesting that soil disturbance by a reduction in host plant richness leads to a less equitable distribution of AM fungal species, in contrast to natural soils. The chosen primers (AMV4.5F/AMDGR) for pyrosequencing showed high AM fungal specificity. Based on 97% sequence similarity, 49 operational taxonomic units (MOTUs) were obtained and, amongst these, 41 MOTUs corresponded to the Glomeromycotaphylum. The number of obtained AM sequences ranged from 2164, associated with field samples, to 5572 obtained from pecan trap pot culture samples, defining 30 and 29 MOTUs, respectively. Richness estimated by conventional species identification was 6 and 9 AM fungal species in soil and pot samples, respectively. Claroideoglomuslamellosum, Funneliformismosseae and Entrophosporainfrequens were the only taxa detected using both techniques. Predominant sequences in the pecan rhizosphere samples, such as Rhizoglomusirregulare and other less abundant (Dominikiairanica, Dominikiaindica, Sclerocystissinuosa, Paraglomuslaccatum), were detected only by pyrosequencing. Detection of AM fungal species based on spore morphology, in combination with molecular approaches, provides a more comprehensive estimate of fungal community composition.

scholarly journals Seasonal Diversity of Arbuscular Mycorrhizal Fungi in Mangroves of Goa, India

2013 ◽  
Vol 2013 ◽  
pp. 1-7 ◽  
Author(s):  
James D’Souza ◽  
Bernard Felinov Rodrigues
Keyword(s):  
Species Richness ◽  
Mycorrhizal Fungi ◽  
Monsoon Season ◽  
Arbuscular Mycorrhizal ◽  
Fungal Spore ◽  
Fungal Species ◽  
Spore Density ◽  
Species Variation ◽  
Fungal Community Composition ◽  
Mangrove Plant

Seasonal dynamics of arbuscular mycorrhizal (AM) fungal community composition in three common mangrove plant species, namely, Acanthus ilicifolius, Excoecaria agallocha, and Rhizophora mucronata, from two sites in Goa, India, were investigated. In all three species variation in AM fungal spore density was observed. Maximum spore density and AM species richness were recorded in the premonsoon season, while minimum spore density and richness were observed during monsoon season at both sites. A total of 11 AM fungal species representing five genera were recorded. Acaulospora laevis was recorded in all seasons at both sites. Multivariate analysis revealed that season and host coaffected AM spore density and species richness with the former having greater influence than the latter.

scholarly journals Arbuscular mycorrhizal fungi (Glomeromycota) of the Vistula Bar

2014 ◽  
Vol 37 (1-2) ◽  
pp. 39-62 ◽  
Author(s):  
Janusz Błaszkowski ◽  
Iwona Adamska ◽  
Beata Czerniawska
Keyword(s):  
Arbuscular Mycorrhizal Fungi ◽  
Mycorrhizal Fungi ◽  
Sand Dunes ◽  
Arbuscular Mycorrhizal ◽  
Fungal Species ◽  
Field Samples ◽  
North Eastern ◽  
Dry Soil ◽  
Soil Mixtures ◽  
Plant Families

The occurrence of arbuscular mycorrhizal fungi (AMF) of the, phylum <i>Glomeromycota</i> associated with plants of maritime sand dunes of the Vistula Bar localed in north-eastern Poland was investigated. The presence of AMF was revealed based on spores isolated from field-collected root-rhizosphere soil mixtures and two-cycle pot trap cultures established with parts of these mixtures. The mixtures came from under five species in four plant families. Spores of AMF occurred in 54.8% of the field samples and belonged to eight species. Additionally, culturing of root-soil mixtures in trap cultures revealed nine species and three undescribed morphotypes carlier not found in the field samples. Considering the number of records of species and morphotypes in the field samples and trap cultures, the fungal species most frequently occurring in dunes of the Vistula Bar is <i>Scutellospora dipurpurescens</i>, followed by <i>Archaeospora trappei, Glomus laccatum</i>, and <i>Scu. armeniaca</i>. The overall average spore abundance in the field samples is low (4.48, range O-3l in 100g dry soil). The ovcrall average species richness determined based on spores from both the field and trap cultures was 2 l and ranged from 0 lo 7 in 100g dry soil. The plant harbouring the highest number of species of AMF was <i>Festuca rubra</i>. Of the maritime dune sites of Poland examined to date, the species composition of AMF of the Vistula Bar is most similar to that of the Słowiński National Park. When the comparisons included 15 maritime dune areas located outside Poland, the highest similarity occurred in the Vistula Bar/Canada comparison.

scholarly journals Changes in Soil-Borne Communities of Arbuscular Mycorrhizal Fungi during Natural Regrowth of Abandoned Cattle Pastures Are Indicative of Ecosystem Restoration

Agronomy ◽  
2021 ◽  
Vol 11 (12) ◽  
pp. 2468
Author(s):  
Carlos H. Rodríguez-León ◽  
Clara P. Peña-Venegas ◽  
Armando Sterling ◽  
Herminton Muñoz-Ramirez ◽  
Yeny R. Virguez-Díaz
Keyword(s):  
Arbuscular Mycorrhizal Fungi ◽  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Arbuscular Mycorrhizal ◽  
Small Subunit ◽  
Fungal Communities ◽  
Small Subunit Rrna ◽  
Fungal Community Composition ◽  
Natural Restoration ◽  
Degraded Pastures

Natural restoration of ecosystems includes the restoration of plant-microbial associations; however, few studies had documented those changes in tropical ecosystems. With the aim to contribute to understand soil microbial changes in a natural regrowth succession of degraded pastures that were left for natural restoration, we studied changes in arbuscular mycorrhizal (AM) fungal communities. Arbuscular mycorrhizal fungi (AMF) establish a mutualistic symbiosis with plants, improving plant nutrition. Amplification of the small subunit rRNA with specific primers and subsequent Illumina sequencing were used to search soil-borne AM fungal communities in four successional natural regrowth stages in two landscapes (hill and mountain) with soil differences, located in the Andean-Amazonian transition. Molecular results corroborated the results obtained previously by spores-dependent approaches. More abundance and virtual taxa of AMF exist in the soil of degraded pastures and early natural regrowth stages than in old-growth or mature forest soils. Although changes in AM fungal communities occurred similarly over the natural regrowth chronosequence, differences in soil texture between landscapes was an important soil feature differentiating AM fungal community composition and richness. Changes in soil-borne AM fungal communities reflect some signals of environmental restoration that had not been described before, such as the reduction of Glomus dominance and the increase of Paraglomus representativeness in the AM fungal community during the natural regrowth chronosequence.

scholarly journals Fungal community assembly in soils and roots under plant invasion and nitrogen deposition

2018 ◽  
Author(s):  
Michala L. Phillips ◽  
S□ren E. Weber ◽  
Lela V. Andrews ◽  
Emma L. Aronson ◽  
Michael F. Allen ◽  
...  
Keyword(s):  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Native Species ◽  
Arbuscular Mycorrhizal ◽  
N Deposition ◽  
Fungal Communities ◽  
Atmospheric Nitrogen ◽  
Annual Grass ◽  
Fungal Community Composition ◽  
Rapid Changes

AbstractAbstract Fungal community composition in the Anthropocene is driven by rapid changes in environmental conditions caused by human activities. This study examines the relative importance of two global change drivers – atmospheric nitrogen (N) deposition and annual grass invasion – on structuring fungal communities in a California chaparral ecosystem, with emphasis on arbuscular mycorrhizal fungi. We used molecular markers, functional groupings, generalized linear statistics and joint distribution modeling, to examine how environmental variables structure taxonomic and functional composition of fungal communities. Invasion of a chaparral ecosystem decreased richness and relative abundance of non-AMF symbionts and rhizophilic AMF (e.g. Glomeraceae) as well as the proportion of edaphophilic AMF (e.g. Gigasporaceae). We found increased richness and the proportion of rhizophilic and edaphophilic AMF with increasing soil NO3. Our findings suggest that invasive persistence may decrease the presence of multiple soil symbionts that native species depend on for pathogen protection and increased access to soil resources.

scholarly journals Metabarcoding of Soil Fungal Communities from Perturbed Areas Reveal Drive Role of Environmental Factors in Microbial Diversity of Colombian Andosols

2021 ◽  
Author(s):  
RAUL ALEXANDER ARANGUREN AROCA ◽  
Samuele Voyron ◽  
Fabrizio Ungaro ◽  
Julio Cañón ◽  
Erica Lumini
Keyword(s):  
Land Use ◽  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Alpha Diversity ◽  
Arbuscular Mycorrhizal ◽  
Conservation Agriculture ◽  
Illumina Miseq ◽  
Fungal Communities ◽  
Its2 Region ◽  
Fungal Community Composition

Abstract Changes in soil fungal community caused by land use have not been sufficiently studied in South-American Andosols, considered globally as important food production areas. This study analyzed 26 soil samples of Andosols collected from locations devoted to conservation, agriculture and mining activities in the southeastern region of Antioquia, Colombia, to establish differences between fungal communities as indicators of the degree of soil perturbation. The study developed a novel heminested PCR with primers SSUmCf Mix, ITS4 and fITS7 to assess Arbuscular Mycorrhizal Fungi detection in a Illumina MiSeq metabarcoding on nuclear ribosomal ITS2 region. A non-metric multidimensional scaling allowed exploring driver factors of fungal community changes, while fitted Dirichlet-multinomial models and PERMANOVA tests allowed identifying the correlations between alpha diversity indexes and community dissimilarities, as well as the significance of land use effects on fungal community composition. Furthermore, response ratios were determined to assess effect size by land use over relevant taxa. Results suggest a good coverage of fungal diversity with a detection of 10,529 high-quality ITS2 sequences belonged to phylum Glomeromycota. The analysis shows strong correlations of Shannon and Fisher indexes with dissimilarities on fungal communities among land uses (r=0.94), related to variations in temperature, air humidity and organic matter contents that lead to significant responses in abundances of relevant orders (such as Wallemiales and Trichosporonales). The study highlights the rich fungal biodiversity of the tropical Andosols, their specific sensitivities to environmental perturbation factors, and the useful range of a metabarcoding approach to characterize soil fungal communities.

Temporal dynamics of mycorrhizal fungal communities and co-associations with grassland plant communities following experimental manipulation of rainfall

2019 ◽  
Author(s):  
Coline Deveautour ◽  
Sally Power ◽  
Kirk Barnett ◽  
Raul Ochoa-Hueso ◽  
Suzanne Donn ◽  
...  
Keyword(s):  
Community Composition ◽  
Plant Community ◽  
Plant Communities ◽  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Temporal Dynamics ◽  
Arbuscular Mycorrhizal ◽  
Fungal Communities ◽  
Plant Responses ◽  
Rainfall Regimes

Climate models project overall a reduction in rainfall amounts and shifts in the timing of rainfall events in mid-latitudes and sub-tropical dry regions, which threatens the productivity and diversity of grasslands. Arbuscular mycorrhizal fungi may help plants to cope with expected changes but may also be impacted by changing rainfall, either via the direct effects of low soil moisture on survival and function or indirectly via changes in the plant community. In an Australian mesic grassland (former pasture) system, we characterised plant and arbuscular mycorrhizal (AM) fungal communities every six months for nearly four years to two altered rainfall regimes: i) ambient, ii) rainfall reduced by 50% relative to ambient over the entire year and iii) total summer rainfall exclusion. Using Illumina sequencing, we assessed the response of AM fungal communities sampled from contrasting rainfall treatments and evaluated whether variation in AM fungal communities was associated with variation in plant community richness and composition. We found that rainfall reduction influenced the fungal communities, with the nature of the response depending on the type of manipulation, but that consistent results were only observed after more than two years of rainfall manipulation. We observed significant co-associations between plant and AM fungal communities on multiple dates. Predictive co-correspondence analyses indicated more support for the hypothesis that fungal community composition influenced plant community composition than vice versa. However, we found no evidence that altered rainfall regimes were leading to distinct co-associations between plants and AM fungi. Overall, our results provide evidence that grassland plant communities are intricately tied to variation in AM fungal communities. However, in this system, plant responses to climate change may not be directly related to impacts of altered rainfall regimes on AM fungal communities. Our study shows that AM fungal communities respond to changes in rainfall but that this effect was not immediate. The AM fungal community may influence the composition of the plant community. However, our results suggest that plant responses to altered rainfall regimes at our site may not be resulting via changes in the AM fungal communities.

Occurrence of Vesicular-Arbuscular Mycorrhizal Fungi in Alberta, Canada

1993 ◽  
Vol 48 (11-12) ◽  
pp. 923-929 ◽  
Author(s):  
S. M. Boyetchko ◽  
J. P. Tewari
Keyword(s):  
Electron Microscopy ◽  
Scanning Electron Microscopy ◽  
Mycorrhizal Fungi ◽  
Arbuscular Mycorrhizal ◽  
Fungal Species ◽  
Glomus Aggregatum ◽  
X Ray ◽  
Vesicular Arbuscular ◽  
Spore Walls ◽  
Scanning Electron

Abstract Three V A mycorrhizal fungal species were isolated from soils in Alberta, Canada and examined by scanning electron microscopy and energy-dispersive X-ray microanalysis. Mature spores of Glomus aggregatum developed an outer hyaline wall which contained lower levels of calcium than the middle wall. Examination of G. pansihalos spores revealed a lower level of calcium in the outer evanescent wall as compared to the ornamented wall. When spores of Entrophospora infrequens were examined, the wall of the vesicle was found to contain similar levels of calcium as the ornamented wall of the spore. The significance of the results concerning the presence of calcium in mycorrhizal spore walls is discussed, as is the occurrence of the mycorrhizal species.

Soil disturbance and water stress interact to influence arbuscular mycorrhizal fungi, rhizosphere bacteria and potential for N and C cycling in an agricultural soil

2018 ◽  
Vol 55 (1) ◽  
pp. 53-66 ◽  
Author(s):  
Bede S. Mickan ◽  
Lynette K. Abbott ◽  
Zakaria M. Solaiman ◽  
Falko Mathes ◽  
Kadambot H. M. Siddique ◽  
...  
Keyword(s):  
Water Stress ◽  
Arbuscular Mycorrhizal Fungi ◽  
Mycorrhizal Fungi ◽  
Agricultural Soil ◽  
Arbuscular Mycorrhizal ◽  
Soil Disturbance ◽  
Rhizosphere Bacteria ◽  
C Cycling

scholarly journals Mycorrhizal fungi inoculation and phosphorus fertilizer on growth, essential oil production and nutrient uptake in peppermint (Mentha piperita L.)

2012 ◽  
Vol 14 (4) ◽  
pp. 692-699 ◽  
Author(s):  
M.C. Arango ◽  
M.F. Ruscitti ◽  
M.G. Ronco ◽  
J. Beltrano
Keyword(s):  
Essential Oil ◽  
Plant Growth ◽  
Arbuscular Mycorrhizal Fungi ◽  
Mycorrhizal Fungi ◽  
Glomus Intraradices ◽  
Arbuscular Mycorrhizal ◽  
Fungal Species ◽  
Mentha Piperita ◽  
Essential Oil Yield ◽  
Essential Oil Production

This study evaluated the effects of inoculation with the arbuscular mycorrhizal fungi Glomus mosseae, Glomus intraradices A4 and Glomus intraradices B1 and two phosphorus levels (10 and 40 mg kg-1) on root colonization, plant growth, nutrient uptake and essential oil content in Mentha piperita L. The experiment was carried out in a greenhouse, in 4x2 factorial arrangement, in completely randomized design. At sixty days after transplanting, the mycorrhizal plants had significantly higher fresh matter, dry matter and leaf area compared to non-mycorrhizal plants. The inoculation increased P, K and Ca levels in the shoot which were higher under 40 mg P kg-1 of soil. Plants grown with 40 mg P kg-1 soil increased the essential oil yield per plant by about 40-50% compared to those cultivated with 10 mg P kg-1, regardless of the mycorrhizal treatment. Among the studied fungal species, inoculation with G. intraradices A4 and a high level of P significantly increased plant growth and essential oil yield, compared to the other studied mycorrhizal fungal species. In conclusion, inoculation of arbuscular mycorrhizal fungi into peppermint plants is a feasible alternative to increase the essential oil production and reduce the use of fertilizers required to obtain economic production of peppermint under phosphorus-deficient soil condition.

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