scholarly journals Genetic Characterization of Genetic Resources of <i>Aegilops tauschii</i>, Wheat D Genome Donor, Newly Collected in North Caucasia

2017 ◽  
Vol 08 (11) ◽  
pp. 2769-2784
Author(s):  
Ayaka Kakizaki ◽  
Taihachi Kawahara ◽  
Mikhail Alexandrovich Zhuk ◽  
Tamara Nikolaevna Smekalova ◽  
Kazuhiro Sato ◽  
...  
Genetics ◽  
2000 ◽  
Vol 155 (1) ◽  
pp. 361-367 ◽  
Author(s):  
Wolfgang Spielmeyer ◽  
Odile Moullet ◽  
André Laroche ◽  
Evans S Lagudah

Abstract A detailed RFLP map was constructed of the distal end of the short arm of chromosome 1D of Aegilops tauschii, the diploid D-genome donor species of hexaploid wheat. Ae. tauschii was used to overcome some of the limitations commonly associated with molecular studies of wheat such as low levels of DNA polymorphism. Detection of multiple loci by most RFLP probes suggests that gene duplication events have occurred throughout this chromosomal region. Large DNA fragments isolated from a BAC library of Ae. tauschii were used to determine the relationship between physical and genetic distance at seed storage protein loci located at the distal end of chromosome 1DS. Highly recombinogenic regions were identified where the ratio of physical to genetic distance was estimated to be &lt;20 kb/cM. These results are discussed in relation to the genome-wide estimate of the relationship between physical and genetic distance.


2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Jill A. Nemacheck ◽  
Brandon J. Schemerhorn ◽  
Steven R. Scofield ◽  
Subhashree Subramanyam

Abstract Background The Hessian fly (Mayetiola destructor), belonging to the gall midge family (Cecidomyiidae), is a devastating pest of wheat (Triticum aestivum) causing significant yield losses. Despite identification and characterization of numerous Hessian fly-responsive genes and associated biological pathways involved in wheat defense against this dipteran pest, their functional validation has been challenging. This is largely attributed to the large genome, polyploidy, repetitive DNA, and limited genetic resources in hexaploid wheat. The diploid progenitor Aegilops tauschii, D-genome donor of modern-day hexaploid wheat, offers an ideal surrogate eliminating the need to target all three homeologous chromosomes (A, B and D) individually, and thereby making the functional validation of candidate Hessian fly-responsive genes plausible. Furthermore, the well-annotated sequence of Ae. tauschii genome and availability of genetic resources amenable to manipulations makes the functional assays less tedious and time-consuming. However, prior to utilization of this diploid genome for downstream studies, it is imperative to characterize its physical and molecular responses to Hessian fly. Results In this study we screened five Ae. tauschii accessions for their response to the Hessian fly biotypes L and vH13. Two lines were identified that exhibited a homozygous resistance response to feeding by both Hessian fly biotypes. Studies using physical measurements and neutral red staining showed that the resistant Ae. tauschii accessions resembled hexaploid wheat in their phenotypic responses to Hessian fly, that included similarities in larval developmental stages, leaf and plant growth, and cell wall permeability. Furthermore, molecular responses, characterized by gene expression profiling using quantitative real-time PCR, in select resistant Ae. tauschii lines also revealed similarities with resistant hexaploid wheat. Conclusions Phenotypic and molecular characterization of Ae. tauschii to Hessian fly infestation revealed resistant accessions that shared similarities to hexaploid wheat. Resembling the resistant hexaploid wheat, the Ae. tauschii accessions mount an early defense strategy involving defense proteins including lectins, secondary metabolites and reactive oxygen species (ROS) radicals. Our results reveal the suitability of the diploid progenitor for use as an ideal tool for functional genomics research in deciphering the wheat-Hessian fly molecular interactions.


2020 ◽  
Vol 71 (4) ◽  
pp. 334-343 ◽  
Author(s):  
Chiara Pastore ◽  
Marisa Fontana ◽  
Stefano Raimondi ◽  
Paola Ruffa ◽  
Ilaria Filippetti ◽  
...  

2007 ◽  
Vol 3 (1) ◽  
pp. 77-82 ◽  
Author(s):  
Qi-Jiao Chen ◽  
Lian-Quan Zhang ◽  
You-Wei Yang ◽  
Zhong-Wei Yuan ◽  
Zhi-Guo Xiang ◽  
...  

Diversity ◽  
2021 ◽  
Vol 13 (5) ◽  
pp. 217
Author(s):  
Mazin Mahjoob Mohamed Mahjoob ◽  
Tai-Shen Chen ◽  
Yasir Serag Alnor Gorafi ◽  
Yuji Yamasaki ◽  
Nasrein Mohamed Kamal ◽  
...  

Aegilops tauschii Coss., the D genome donor of hexaploid wheat (Triticum aestivum L.), is the most promising resource used to broaden the genetic diversity of wheat. Taxonomical studies have classified Ae. tauschii into two subspecies, ssp. tauschii and ssp. strangulata. However, molecular analysis revealed three distantly related lineages, TauL1, TauL2 and TauL3. TauL1 and TauL3 includes the only ssp. tauschii, whereas TauL2 includes both subspecies. This study aimed to clarify the phylogeny of Ae. tauschii and to find the traits that can differentiate between TauL1, TauL2 and TauL3, or between ssp. tauschii and ssp. strangulata. We studied the genetic and morpho-physiological diversity in 293 accessions of Ae. tauschii, covering the entire range of the species. A total of 5880 high-quality SNPs derived from DArTseq were used for phylogenetic cluster analyses. As a result, we observed wide morpho-physiological variation in each lineage and subspecies. Despite this variation, no key traits can discriminate lineages or subspecies though some traits were significantly different. Of 124 accessions previously lacking the passport data, 66 were allocated to TauL1, 57 to TauL2, and one to TauL3.


2015 ◽  
Vol 7 (2) ◽  
pp. 210-216 ◽  
Author(s):  
De-yong ZHAO ◽  
Fu-lai SUN ◽  
Bo ZHANG ◽  
Zhi-qiang ZHANG ◽  
Long-quan YIN

Identifying and manipulating genes underlying selenium metabolism could be helpful for increasing selenium content in crop grain, which is an important way to overcome diseases resulted from selenium deficiency. A reciprocal smallest distance algorithm (RSD) approach was applied using two experimentally confirmed Homocysteine S-Methyltransferases genes (HMT1 and HMT2) and a putative Selenocysteine Methyltransferase (SMT) from dicots plant Arabidopsis thaliana, to explore their orthologs in seven sequenced diploid monocot species: Oryza sativa, Zea mays, Sorghum bicolor, Brachypodium distachyon, Hordeum vulgare, Aegilops tauschii (the D-genome donor of common wheat) and Triticum urartu (the A-genome donor of common wheat). HMT1 was apparently diverged from HMT2 and most of SMT orthologs were the same with that of HMT2 in this study, leading to the hypothesis that SMT and HMT originate from one common ancestor gene. Identifying orthologs provide candidates for further experimental confirmation; also it could be helpful in designing primers to clone SMT or HMT orthologs in other crops.


2005 ◽  
Vol 139 (2) ◽  
pp. 1078-1094 ◽  
Author(s):  
Margreet W. ter Steege ◽  
Franka M. den Ouden ◽  
Hans Lambers ◽  
Piet Stam ◽  
Anton J.M. Peeters

2019 ◽  
Vol 10 ◽  
Author(s):  
Bouchaib Khadari ◽  
Ahmed El Bakkali ◽  
Laila Essalouh ◽  
Christine Tollon ◽  
Christian Pinatel ◽  
...  

Genome ◽  
2003 ◽  
Vol 46 (2) ◽  
pp. 330-338 ◽  
Author(s):  
K -M Turnbull ◽  
M Turner ◽  
Y Mukai ◽  
M Yamamoto ◽  
M K Morell ◽  
...  

The grain hardness locus, Ha, is located at the distal end of the short arm of chromosome 5D in wheat. Three polypeptides, puroindoline-a, puroindoline-b, and grain softness protein (GSP-1), have been identified as components of friabilin, a biochemical marker for grain softness, and the genes for these polypeptides are known to be tightly linked to the Ha locus. However, this region of the chromosome 5D has not been well characterized and the physical distance between the markers is not known. Separate lambda clones containing the puroindoline-a gene and the puroindoline-b gene have been isolated from an Aegilops tauschii (the donor of the D genome to wheat) genomic lambda library and investigated. Considerable variation appears to exist in the organization of the region upstream of the gene for puroindoline-b among species closely related to wheat. Using in situ hybridization the genes for puroindoline-a, -b, and GSP-1 were demonstrated to be physically located at the tip of the short arm of chromosome 5 of A. tauschii. Four overlapping clones were isolated from a large-insert BAC library constructed from A. tauschii and of these one contained genes for all of puroindoline-a, puroindoline-b, and GSP-1. The gene for puroindoline-a is located between the other two genes at a distance no greater than approximately 30 kb from either gene. The BAC clone containing all three known genes was used to screen a cDNA library constructed from hexaploid wheat and cDNAs that could encode novel polypeptides were isolated.Key words: puroindolines, GSP-1, chromosome 5D, BAC library, tauschii.


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