scholarly journals ĐA HÌNH MICROSATELLITE LIÊN KẾT VỚI GEN HEPCIDIN/HAMP TIỀM NĂNG TRONG CHỌN GIỐNG CÁ RÔ PHI VẰN KHÁNG BỆNH DO Streptococcus iniae

2021 ◽  
Vol 5 (3) ◽  
pp. 2727-2739
Author(s):  
Phạm Hồng Nhật ◽  
Chia -Hui Ho ◽  
Po -Chun Tseng ◽  
Hong -Yi Gong
Keyword(s):  
First Generation ◽  
Selective Breeding ◽  
Economic Loss ◽  
Average Weight ◽  
Streptococcus Iniae ◽  
Specific Pcr ◽  
Hardy Weinberg Equilibrium ◽  
Specific Pcr Primer ◽  
Major Infectious Disease ◽  
Significant Economic Loss

Bệnh xuất huyết do vi khuẩn Streptococcus sp là mầm bệnh truyền nhiễm chính gây thiệt hại đáng kể đến sản lượng cá rô phi toàn cầu. Hepcidin/HAMP ở cá đã được báo cáo có liên quan đến miễn dịch bẩm sinh chống lại các mầm bệnh vi khuẩn. Trong nghiên cứu này, chúng tôi tiến hành phân tích mối quan hệ giữa tính đa hình microsatellites/SSRs liên kết với gen hepcidin/HAMP và khả năng kháng bệnh do Streptococcus iniae trên cá rô phi vằn dòng NT1 (Đài Loan). 17 chỉ thị SSRs và cặp mồi đặc hiệu đã được thiết kế dựa trên WebSat. Kết quả đánh giá trên 95 cá thể cho thấy 9/17 chỉ thị SSRs có tính đa hình cao và tuân theo định luật Hardy-Weinberg. Các chỉ thị này sẽ được sử dụng để đánh giá khả năng kháng vi khuẩn S. iniae. 29 cá rô phi NT1 thế hệ thứ nhất (khối lượng 23,59 ± 5,388 g/con) đã được cảm nhiễm với vi khuẩn S. iniae 89353 bằng phương pháp tiêm, với liều tiêm LD50 là 1,3x105 cfu/mL. Kết quả phân tích cho thấy, có sự sai khác có ý nghĩa thống kê về kiểu gen và tần số alen giữa nhóm sống và nhóm chết sau cảm nhiễm vi khuẩn ở 3 chỉ thị SSRs (SSR7, SSR9 và SSR16) (p<0,05). Đây là marker có tiềm năng cho chọn giống cá rô phi Đài Loan kháng bệnh do S. iniae. ABSTRACT Streptococcus has been recognized as a major infectious disease-causing significant economic loss in tilapia aquaculture in many countries. The hepatic antimicrobial peptide hepcidin/HAMP was reported to be associated with innate immunity which defends against various bacterial pathogens and viruses. In this study, we analyzed the corelation between the microsatellites/SSRs polymorphism in the hepcidin/HAMP genes and the resistance to Streptococcus iniae in the NT1strain (tilapia strain in Taiwan). Seventeen of hepcidin/HAMP-related SSRs and 17 SSR-specific PCR primer were designed using WebSat. The result showed that 9/17 hepcidin/HAMP-related SSRs were polymorphic markers and there is significant deviation from Hardy-Weinberg Equilibrium (HWE) (p<0,05). These SSRs were examined for disease resistance to S. iniae. Twenty-nine the First generation (G1) tilapia of NT1 strain (average weight of 23,59 ± 5,388g/fish) were challenged with virulent S. iniae 89353 through intraperioneal injection at dose of LD50 (1,3x105 cfu/ml). In this study, the genotype and the allele frequency in three SSRs (SSR7, SSR9 và SSR16) were significantly different between two groups (death fish with infected signals of S. iniae and alive fish infected with S. iniae) (p<0,05). Three SSRs (SSR7, SSR9 và SSR16) are considered as potential molecular markers for selective breeding of Taiwanese tilapia which resists to S. iniae.

scholarly journals Impact of Nisin and Nisin-Producing Lactococcus lactis ssp. lactis on Clostridium tyrobutyricum and Bacterial Ecosystem of Cheese Matrices

Foods ◽  
2021 ◽  
Vol 10 (4) ◽  
pp. 898
Author(s):  
Hebatoallah Hassan ◽  
Daniel St-Gelais ◽  
Ahmed Gomaa ◽  
Ismail Fliss
Keyword(s):  
Lactococcus Lactis ◽  
Cheddar Cheese ◽  
Economic Loss ◽  
Gas Production ◽  
Clostridium Tyrobutyricum ◽  
Nisin Production ◽  
Genus Clostridium ◽  
Milk Pasteurization ◽  
Cheese Slurry ◽  
Significant Economic Loss

Clostridium tyrobutyricum spores survive milk pasteurization and cause late blowing of cheeses and significant economic loss. The effectiveness of nisin-producing Lactococcus lactis ssp. lactis 32 as a protective strain for control the C. tyrobutyricum growth in Cheddar cheese slurry was compared to that of encapsulated nisin-A. The encapsulated nisin was more effective, with 1.0 log10 reductions of viable spores after one week at 30 °C and 4 °C. Spores were not detected for three weeks at 4 °C in cheese slurry made with 1.3% salt, or during week 2 with 2% salt. Gas production was observed after one week at 30 °C only in the control slurry made with 1.3% salt. In slurry made with the protective strain, the reduction in C. tyrobutyricum count was 0.6 log10 in the second week at 4 °C with both salt concentration. At 4 °C, nisin production started in week 2 and reached 97 µg/g after four weeks. Metabarcoding analysis targeting the sequencing of 16S rRNA revealed that the genus Lactococcus dominated for four weeks at 4 °C. In cheese slurry made with 2% salt, the relative abundance of the genus Clostridium decreased significantly in the presence of nisin or the protective strain. The results indicated that both strategies are able to control the growth of Clostridium development in Cheddar cheese slurries.

scholarly journals Rapid Multi-Hybridisation FISH Screening for Balanced Porcine Reciprocal Translocations Suggests a Much Higher Abnormality Rate Than Previously Appreciated

Cells ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 250
Author(s):  
Rebecca E O’Connor ◽  
Lucas G Kiazim ◽  
Claudia C Rathje ◽  
Rebecca L Jennings ◽  
Darren K Griffin
Keyword(s):  
Semen Analysis ◽  
In Situ Hybridisation ◽  
Economic Loss ◽  
Environmental Damage ◽  
Fluorescence In Situ Hybridisation ◽  
Reciprocal Translocations ◽  
Chromosome Translocations ◽  
Farrowing Rate ◽  
Significant Economic Loss

With demand rising, pigs are the world’s leading source of meat protein; however significant economic loss and environmental damage can be incurred if boars used for artificial insemination (AI) are hypoprolific (sub-fertile). Growing evidence suggests that semen analysis is an unreliable tool for diagnosing hypoprolificacy, with litter size and farrowing rate being more applicable. Once such data are available, however, any affected boar will have been in service for some time, with significant financial and environmental losses incurred. Reciprocal translocations (RTs) are the leading cause of porcine hypoprolificacy, reportedly present in 0.47% of AI boars. Traditional standard karyotyping, however, relies on animal specific expertise and does not detect more subtle (cryptic) translocations. Previously, we reported development of a multiple hybridisation fluorescence in situ hybridisation (FISH) strategy; here, we report on its use in 1641 AI boars. A total of 15 different RTs were identified in 69 boars, with four further animals XX/XY chimeric. Therefore, 4.5% had a chromosome abnormality (4.2% with an RT), a 0.88% incidence. Revisiting cases with both karyotype and FISH information, we reanalysed captured images, asking whether the translocation was detectable by karyotyping alone. The results suggest that chromosome translocations in boars may be significantly under-reported, thereby highlighting the need for pre-emptive screening by this method before a boar enters a breeding programme.

Optimization of Thin-Film Winding Conditions Considering Viscoelastic Property and Thickness Variation and its Experimental Verification

2018 ◽  
Author(s):  
Yuta Sunami ◽  
Hiromu Hashimoto
Keyword(s):  
Viscoelastic Property ◽  
Stress Condition ◽  
Economic Loss ◽  
Thickness Variation ◽  
Plastic Films ◽  
Roll To Roll ◽  
Condition Optimization ◽  
Wound Rolls ◽  
Predicted Values ◽  
Significant Economic Loss

Plastic films are produced using roll-to-roll systems, which allow the film to be wound into a roll and stored in a small space. Roll defects, however, can cause significant economic loss, and gage bands remain an open area of research. More recently, plastic films have become thinner, so we must now reconsider wrinkling and slippage, problems which depend on the in-roll stress condition. Therefore, predicting the stress condition is essential to preventing defects occurring in wound rolls. In addition, the in-roll stress will change over time as a result of viscoelastic properties. This study theoretically investigates and experimentally verifies winding condition optimization and in-roll stress in consideration of the viscoelastic property and web thickness profile at a constant rewinding tension. Results show that the predicted values are in agreement with the measured values.

scholarly journals PREVALENCE OF BRUCELLOSIS IN BLACK BENGAL GOATS IN BANGLADESH

2013 ◽  
Vol 10 (1-2) ◽  
pp. 51-56 ◽  
Author(s):  
M. S. Rahman ◽  
S. Mithu ◽  
M. T. Islam ◽  
M. J. Uddin ◽  
R. R. Sarker ◽  
...  
Keyword(s):  
Epidemiological Data ◽  
Economic Loss ◽  
Cross Sectional Study ◽  
Confirmatory Test ◽  
Sectional Study ◽  
Cross Sectional ◽  
History Of ◽  
Significant Economic Loss ◽  
Sera Samples ◽  
Structured Questionnaire

Brucellosis is an important bacterial zoonotic disease causing significant economic loss in dairy industries worldwide including Bangladesh. But limited studies are devoted to determine the prevalence of brucellosis in goat in all districts of Bangladesh. Therefore, a cross-sectional study was undertaken to determine the seroprevalence of brucellosis in Black Bengal goats in Nilphamari Sadar and Kishoreganj upazillas of Nilphamari district of Bangladesh using Rose Bengal Test (RBT) as screening test and I-ELISA as confirmatory test. A total of 154 sera samples from Black Bengal goats were collected from Nilphamari district. Epidemiological data on the selected Black Bengal goats were collected using a structured questionnaire. The overall seroprevalence of brucellosis was found to be 2.59% in Black Bengal goats. A significantly (p<0.01) higher prevalence of brucellosis was found in Black Bengal goats with the history of previous abortion (33.33%). An insignificant (p>0.05) but higher prevalence of brucellosis was found in adult Black Bengal goats (>24 months) than young. The prevalence was relatively higher in cross-bred than pure Black Bengal goats, in female than male and in pregnant than non-pregnant Black Bengal goats. The result of the study will provide baseline data for control of brucellosis in goat in Bangladesh.DOI: http://dx.doi.org/10.3329/bjvm.v10i1-2.15646

scholarly journals A New ‘Candidatus Liberibacter’ Species Associated with Diseases of Solanaceous Crops

Plant Disease ◽  
2009 ◽  
Vol 93 (3) ◽  
pp. 208-214 ◽  
Author(s):  
Lia W. Liefting ◽  
Paul W. Sutherland ◽  
Lisa I. Ward ◽  
Kerry L. Paice ◽  
Bevan S. Weir ◽  
...  
Keyword(s):  
16S Rrna ◽  
Pcr Primers ◽  
23S Rrna ◽  
Rrna Gene ◽  
High Identity ◽  
Specific Pcr ◽  
Transmission Electron ◽  
Candidatus Liberibacter ◽  
Polymerase Chain ◽  
Specific Pcr Primer

A new disease of glasshouse-grown tomato and pepper in New Zealand has resulted in plant decline and yield loss. Affected plants are characterized by spiky, chlorotic apical growth, curling or cupping of the leaves, and overall stunting. Transmission electron microscopy revealed the presence of phloem-limited bacterium-like organisms in symptomatic plants. The strategy used to identify the bacterium involved using specific prokaryote polymerase chain reaction (PCR) primers in combination with universal 16S rRNA primers. Sequence analysis of the 16S rRNA gene, the 16S/23S rRNA spacer region, and the rplKAJL-rpoBC operon revealed that the bacterium shared high identity with ‘Candidatus Liberibacter’ species. Phylogenetic analysis showed that the bacterium is distinct from the three citrus liberibacter species previously described and has been named ‘Candidatus Liberibacter solanacearum’. This is the first report of a liberibacter naturally infecting a host outside the Rutaceae family. A specific PCR primer pair was developed for its detection.

scholarly journals Diversity and Detection of Nitrate Assimilation Genes in Marine Bacteria

2001 ◽  
Vol 67 (11) ◽  
pp. 5343-5348 ◽  
Author(s):  
Andrew E. Allen ◽  
Melissa G. Booth ◽  
Marc E. Frischer ◽  
Peter G. Verity ◽  
Jonathan P. Zehr ◽  
...  
Keyword(s):  
Barents Sea ◽  
Heterotrophic Bacteria ◽  
Nitrate Assimilation ◽  
South Atlantic Bight ◽  
The North ◽  
Specific Pcr ◽  
Genetic Potential ◽  
Specific Pcr Primer ◽  
North Pacific Gyre ◽  
The North Pacific

ABSTRACT A PCR approach was used to construct a database of nasAgenes (called narB genes in cyanobacteria) and to detect the genetic potential for heterotrophic bacterial nitrate utilization in marine environments. A nasA-specific PCR primer set that could be used to selectively amplify the nasA gene from heterotrophic bacteria was designed. Using seawater DNA extracts obtained from microbial communities in the South Atlantic Bight, the Barents Sea, and the North Pacific Gyre, we PCR amplified and sequencednasA genes. Our results indicate that several groups of heterotrophic bacterial nasA genes are common and widely distributed in oceanic environments.

scholarly journals Seasonal Occurrence of Different Grasshoppers Species (Orthoptera: Acridoidea) in Uruguay

2016 ◽  
Vol 8 (4) ◽  
pp. 21
Author(s):  
Estrellita Lorier ◽  
Maria Stella Zerbino ◽  
Lucia Miguel
Keyword(s):  
Economic Loss ◽  
Sampling Time ◽  
Seasonal Occurrence ◽  
Time Data ◽  
Monitoring Plan ◽  
Significant Economic Loss

<p class="1Body">This paper aims at knowing the seasonal occurrence of grasshoppers (Orthoptera: Acridoidea) in Uruguay. The populations of these native herbivores are generally in equilibrium, although population increases were recorded under certain conditions, causing significant economic loss. The population was monitored during five seasons on sites located in the departments of Florida and Durazno. The insects were categorized into young nymphs (I, II and III), older nymphs (IV and V), and adults. At each sampling time, data from the different sites were grouped to calculate the percentage of each category. Twenty-six species were collected, eight of which were abundant. <em>Borellia bruneri </em>(Rehn, 1906), <em>B. pallida </em>(Bruner, 1900), <em>Dichroplus pratensis </em>Bruner, 1900 and <em>D. elongatus </em>Giglio-Tos, 1894 proved to be univoltine. More than one generation of <em>Baeacris pseudopunctulatus </em>(Ronderos, 1964), <em>Orphulella punctata </em>(De Geer, 1773)<em>, Scotussa lemniscata </em>(Stal, 1861) and <em>D. conspersus </em>Bruner, 1900, was recorded per year in some seasons. The first births of <em>B. bruneri</em>, <em>B. pallida</em>, <em>D. pratensis</em>, <em>D. conspersus</em>, <em>S. lemniscata</em> and <em>B. pseudopunctulatus </em>occurred in October, whereas for <em>D. elongatus</em> and <em>O. punctata </em>they happened in November. Considering the eight species, young and older nymphs predominated until early December and from late December to early January, respectively. Adulthood was predominant since the end of January. These results are the basis for establishing a monitoring plan. In order to determine the need for control and to avoid irreparable loss, samples must be intensified from early November to the beginning of December, when the young nymphs are no longer predominant.</p>

A simple method for discriminating Bursaphelenchus xylophilus and B. mucronatus by species-specific polymerase chain reaction primer pairs

Nematology ◽  
2004 ◽  
Vol 6 (2) ◽  
pp. 273-277 ◽  
Author(s):  
Koji Matsunaga ◽  
Katsumi Togashi
Keyword(s):  
Pcr Amplification ◽  
Nematode Species ◽  
Bursaphelenchus Xylophilus ◽  
Polymerase Chain Reaction Primer ◽  
Dna Fragments ◽  
Simple Method ◽  
Specific Pcr ◽  
Pcr Products ◽  
Specific Pcr Primer ◽  
Species Specific

Abstract Two species-specific PCR primer pairs were developed for identifying the two nematode species, Bursaphelenchus xylophilus and B. mucronatus. The primer pairs were developed from the sequence of ribosomal DNA (rDNA) repeats to produce DNA fragments of different lengths by PCR amplification. The DNA fragments for B. mucronatus and B. xylophilus were 210 bp and 557 bp, respectively. When mixed, neither primer pair inhibited the PCR amplification of the other. Five isolates of B. xylophilus and four isolates of B. mucronatus showed different band profiles of PCR products between the two species, but identical profiles among isolates of the same species.

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