scholarly journals Picoplankton community structure before, during and after convection event in the offshore waters of the southern Adriatic Sea

2013 ◽  
Vol 10 (11) ◽  
pp. 17859-17892
Author(s):  
M. Najdek ◽  
P. Paliaga ◽  
T. Šilović ◽  
M. Batistić ◽  
R. Garić ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Biomass Production ◽  
Inorganic Nitrogen ◽  
Bacterial Community Composition ◽  
Bacterial Biomass ◽  
Cell Replication ◽  
Large Area ◽  
Metabolic Capacity ◽  
Environmental Forcing ◽  
Autotrophic Biomass

Abstract. This paper documents the picoplankton community's response to changes in oceanographic conditions in the period between October 2011 and September 2012 at two stations belonging to South Adriatic Pit (SAP). The recorded data include the community's abundance, composition, prokaryotic production rates and bacterial metabolic capacity. The aforementioned interval included an intense sea cooling with formation of exceptionally, record-breaking dense water. We documented an especially intense winter convection episode that completely diluted the core of Levantine intermediate waters (LIW) in a large area encompassing the SAP's center and its margin. During this convection event the whole picoplankton community had significantly higher abundances with a recorded picoeukaryotic peak at the SAP margin. In the post-convection phase in March prokaryotic heterotrophic production strongly increased in the entire SAP area (up to 50 times; 456.8 nM C day−1). The autotrophic biomass increase (up to 5 times; 4.86 μg L−1) and a disruption of a close correspondence between prokaryotic heterotrophic biomass production and cell replication rates were observed only in the center of the SAP, which was not under the influence of LIW. At the SAP's margin such an effect was attenuated by LIW, since the waters affected by LIW were characterized by decreased concentrations of dissolved inorganic nitrogen, decreased autotrophic biomasses and by increased bacterial biomass production balanced with cell replication rates as well as by the domination of Synechococcus among autotrophic picoplankton. Metabolic capacity was the lowest in spring when autotrophic biomass largely increased, while the highest levels found in the pre-convection phase (October 2011) suggests that the system was more oligotrophic before than after the convection event. Furthermore, we showed that metabolic capacity is a trait of bacterial community independent of environmental conditions and tightly linked to cell replication and substrate availability. On the other hand the bacterial community composition appears to be strongly influenced by physico-chemical characteristics of waters (e.g. temperature and nutrients) and environmental forcing (e.g. convection and LIW).

scholarly journals Picoplankton community structure before, during and after convection event in the offshore waters of the Southern Adriatic Sea

2014 ◽  
Vol 11 (10) ◽  
pp. 2645-2659 ◽  
Author(s):  
M. Najdek ◽  
P. Paliaga ◽  
T. Šilović ◽  
M. Batistić ◽  
R. Garić ◽  
...  
Keyword(s):  
Community Structure ◽  
Bacterial Community ◽  
Biomass Production ◽  
Adriatic Sea ◽  
Bacterial Community Composition ◽  
Total Production ◽  
Cell Replication ◽  
Metabolic Capacity ◽  
Winter Convection ◽  
Autotrophic Biomass

Abstract. This paper documents the picoplankton community's response to changes in oceanographic conditions in the period between October 2011 and September 2012 at two stations belonging to the South Adriatic Pit (SAP). The recorded data include the community's abundance, composition, prokaryotic production rates and bacterial metabolic capacity. The sampling period included an intense sea cooling with formation of exceptional, record-breaking dense water. We documented an especially intense winter convection episode that completely diluted the core of Levantine intermediate waters (LIW) in a large area encompassing the SAP's center and its margin. During this convection event the whole picoplankton community had significantly higher abundances with a recorded picoeukaryotic peak at the SAP margin. In the post-convection phase in March, prokaryotic heterotrophic production strongly increased in the entire SAP area (up to 50 times; 456.8 nM C day−1). An autotrophic biomass increase (up to 5 times; 4.86 μg L−1) and a disruption of a close correspondence between prokaryotic heterotrophic biomass production and cell replication rates were observed only in the center of the SAP, which was not under the influence of LIW. At the SAP's margin such an effect was attenuated by LIW, since the waters affected by LIW were characterized by decreased concentrations of dissolved inorganic nitrogen, decreased autotrophic biomasses, and by increased bacterial biomass production balanced with cell replication rates as well as by the domination of Synechococcus among autotrophic picoplankton. The metabolic capacity was lowest in spring when autotrophic biomass largely increased, while the highest levels found in the pre-convection phase (October 2011) suggest that the system was more oligotrophic before than after the convection event. Furthermore, we showed that metabolic capacity is a trait of bacterial community independent of environmental conditions and tightly linked to cell replication and substrate availability. In contrast, the bacterial community composition appears to be strongly influenced by physico-chemical characteristics of waters (e.g., temperature and nutrients) and environmental forcing (e.g., convection and LIW). Our results showed that the two oceanographic phenomena of the Southern Adriatic, strongly relevant for the total production of the Adriatic Sea, winter convection and LIW intrusion, regulate the changes in picoplankton community structure and activities.

scholarly journals Agricultural Management Affects the Active Rhizosphere Bacterial Community Composition and Nitrification

mSystems ◽  
2021 ◽  
Author(s):  
Guillaume Bay ◽  
Conard Lee ◽  
Chiliang Chen ◽  
Navreet K. Mahal ◽  
Michael J. Castellano ◽  
...  
Keyword(s):  
Climate Change ◽  
Water Quality ◽  
Bacterial Community ◽  
Community Composition ◽  
Inorganic Nitrogen ◽  
Bacterial Community Composition ◽  
Agricultural Management ◽  
N Fertilizer ◽  
Low Diversity ◽  
Rhizosphere Bacterial Community

Crops in simplified, low-diversity agroecosystems assimilate only a fraction of the inorganic nitrogen (N) fertilizer inputs. Much of this N fertilizer is lost to the environment as N oxides, which degrade water quality and contribute to climate change and loss of biodiversity.

scholarly journals Impacts of Labile Organic Carbon Concentration on Organic and Inorganic Nitrogen Utilization by a Stream Biofilm Bacterial Community

2013 ◽  
Vol 79 (23) ◽  
pp. 7130-7141 ◽  
Author(s):  
Suchismita Ghosh ◽  
Laura G. Leff
Keyword(s):  
Bacterial Community ◽  
Community Composition ◽  
Inorganic Nitrogen ◽  
Bacterial Community Composition ◽  
Organic N ◽  
Humic Matter ◽  
Bacterial Protein ◽  
N Dynamics ◽  
N Source ◽  
Algal Exudate

ABSTRACTIn aquatic ecosystems, carbon (C) availability strongly influences nitrogen (N) dynamics. One manifestation of this linkage is the importance in the dissolved organic matter (DOM) pool of dissolved organic nitrogen (DON), which can serve as both a C and an N source, yet our knowledge of how specific properties of DOM influence N dynamics are limited. To empirically examine the impact of labile DOM on the responses of bacteria to DON and dissolved inorganic nitrogen (DIN), bacterial abundance and community composition were examined in controlled laboratory microcosms subjected to various combinations of dissolved organic carbon (DOC), DON, and DIN treatments. Bacterial communities that had colonized glass beads incubated in a stream were treated with various glucose concentrations and combinations of inorganic and organic N (derived from algal exudate, bacterial protein, and humic matter). The results revealed a strong influence of C availability on bacterial utilization of DON and DIN, with preferential uptake of DON under low C concentrations. Bacterial DON uptake was affected by the concentration and by its chemical nature (labile versus recalcitrant). Labile organic N sources (algal exudate and bacterial protein) were utilized equally well as DIN as an N source, but this was not the case for the recalcitrant humic matter DON treatment. Clear differences in bacterial community composition among treatments were observed based on terminal restriction fragment length polymorphisms (T-RFLP) of 16S rRNA genes. C, DIN, and DON treatments likely drove changes in bacterial community composition that in turn affected the rates of DON and DIN utilization under various C concentrations.

scholarly journals Enhanced bacterial decomposition with increasing addition of autochthonous to allochthonous carbon without any effect on bacterial community composition

2014 ◽  
Vol 11 (6) ◽  
pp. 1479-1489 ◽  
Author(s):  
K. Attermeyer ◽  
T. Hornick ◽  
Z. E. Kayler ◽  
A. Bahr ◽  
E. Zwirnmann ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Community Composition ◽  
Temporal Dynamics ◽  
Heterotrophic Bacteria ◽  
Bacterial Community Composition ◽  
Bacterial Biomass ◽  
Trophic Levels ◽  
Bacterial Growth Efficiency ◽  
Chemical Quality ◽  
Bacterial C

Abstract. Dissolved organic carbon (DOC) concentrations – mainly of terrestrial origin – are increasing worldwide in inland waters. Heterotrophic bacteria are the main consumers of DOC and thus determine DOC temporal dynamics and availability for higher trophic levels. Our aim was to study bacterial carbon (C) turnover with respect to DOC quantity and chemical quality using both allochthonous and autochthonous DOC sources. We incubated a natural bacterial community with allochthonous C (13C-labeled beech leachate) and increased concentrations and pulses (intermittent occurrence of organic matter input) of autochthonous C (phytoplankton lysate). We then determined bacterial C consumption, activities, and community composition together with the C flow through bacteria using stable C isotopes. The chemical analysis of single sources revealed differences in aromaticity and low- and high-molecular-weight substance fractions (LMWS and HMWS, respectively) between allochthonous and autochthonous C sources. Both DOC sources (allochthonous and autochthonous DOC) were metabolized at a high bacterial growth efficiency (BGE) around 50%. In treatments with mixed sources, rising concentrations of added autochthonous DOC resulted in a further, significant increase in bacterial DOC consumption of up to 68% when nutrients were not limiting. This rise was accompanied by a decrease in the humic substance (HS) fraction and an increase in bacterial biomass. Changes in DOC concentration and consumption in mixed treatments did not affect bacterial community composition (BCC), but BCC differed in single vs. mixed incubations. Our study highlights that DOC quantity affects bacterial C consumption but not BCC in nutrient-rich aquatic systems. BCC shifted when a mixture of allochthonous and autochthonous C was provided simultaneously to the bacterial community. Our results indicate that chemical quality rather than source of DOC per se (allochthonous vs. autochthonous) determines bacterial DOC turnover.

Assessment of viral assemblages in different types of wetland water in northeast China using RAPD-PCR

2020 ◽  
Vol 85 ◽  
pp. 183-196
Author(s):  
Y Sun ◽  
J Liu ◽  
Q Yao ◽  
J Jin ◽  
X Liu ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Water Samples ◽  
Northeast China ◽  
Bacterial Community Composition ◽  
Freshwater Wetlands ◽  
Viral Community ◽  
Rapd Pcr ◽  
Wetland Water ◽  
Different Types ◽  
Viral Communities

Viruses are the most abundant and ubiquitous biological entities in various ecosystems, yet few investigations of viral communities in wetlands have been performed. To address this data gap, water samples from 6 wetlands were randomly collected across northeast China; viruses in the water were concentrated by sequential tangential flow filtration, and viral communities were assessed through randomly amplified polymorphic DNA-PCR (RAPD-PCR) with 4 decamer oligonucleotide primers. Principal coordinate analysis and hierarchical clustering analysis of the DNA fingerprints showed that viral community compositions differed among the water samples: communities in the 2 coastal wetlands were more similar to each other than to those in the 4 freshwater wetlands. The Shannon-Weaver index (H) and evenness index (E) of the RAPD-PCR fingerprint also differed among the 6 wetlands. Mantel test revealed that the changes in viral communities in wetland water were most closely related to the water NH4+-N and inorganic C content, followed by total K, P, C and NO3--N. DNA sequence analysis of the excised bands revealed that viruses accounted for ~40% of all sequences. Among the hit viral homologs, the majority belonged to the Microviridae. Moreover, variance partitioning analysis showed that the viral community contributed 24.58% while environmental factors explained 30.56% of the bacterial community variation, indicating that the bacterial community composition was strongly affected by both viral community and water variables. This work provides an initial outline of the viral communities from different types of wetlands in northeast China and improves our understanding of the viral diversity in these ecosystems.

scholarly journals Collection of Environmental Variables and Bacterial Community Compositions in Marian Cove, Antarctica, during Summer 2018

Data ◽  
2021 ◽  
Vol 6 (3) ◽  
pp. 27
Author(s):  
Hyo-Ryeon Kim ◽  
Jae-Hyun Lim ◽  
Ju-Hyoung Kim ◽  
Il-Nam Kim
Keyword(s):  
Bacterial Community ◽  
Community Composition ◽  
Marine Bacteria ◽  
Environmental Variables ◽  
Environmental Changes ◽  
Bacterial Community Composition ◽  
Composition Data ◽  
Decomposition Of Organic Matter ◽  
Class Level ◽  
Earth’S Climate

Marine bacteria, which are known as key drivers for marine biogeochemical cycles and Earth’s climate system, are mainly responsible for the decomposition of organic matter and production of climate-relevant gases (i.e., CO₂, N₂O, and CH₄). However, research is still required to fully understand the correlation between environmental variables and bacteria community composition. Marine bacteria living in the Marian Cove, where the inflow of freshwater has been rapidly increasing due to substantial glacial retreat, must be undergoing significant environmental changes. During the summer of 2018, we conducted a hydrographic survey to collect environmental variables and bacterial community composition data at three different layers (i.e., the seawater surface, middle, and bottom layers) from 15 stations. Of all the bacterial data, 17 different phylum level bacteria and 21 different class level bacteria were found and Proteobacteria occupy 50.3% at phylum level following Bacteroidetes. Gammaproteobacteria and Alphaproteobacteria, which belong to Proteobacteria, are the highest proportion at the class level. Gammaproteobacteria showed the highest relative abundance in all three seawater layers. The collection of environmental variables and bacterial composition data contributes to improving our understanding of the significant relationships between marine Antarctic regions and marine bacteria that lives in the Antarctic.

scholarly journals Artificial neural network analysis of microbial diversity in the central and southern Adriatic Sea

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Danijela Šantić ◽  
Kasia Piwosz ◽  
Frano Matić ◽  
Ana Vrdoljak Tomaš ◽  
Jasna Arapov ◽  
...  
Keyword(s):  
Neural Network ◽  
Network Analysis ◽  
Bacterial Community ◽  
Microbial Diversity ◽  
Community Composition ◽  
Adriatic Sea ◽  
Bacterial Community Composition ◽  
Environmental Data ◽  
Large Contribution ◽  
Neural Network Analysis

AbstractBacteria are an active and diverse component of pelagic communities. The identification of main factors governing microbial diversity and spatial distribution requires advanced mathematical analyses. Here, the bacterial community composition was analysed, along with a depth profile, in the open Adriatic Sea using amplicon sequencing of bacterial 16S rRNA and the Neural gas algorithm. The performed analysis classified the sample into four best matching units representing heterogenic patterns of the bacterial community composition. The observed parameters were more differentiated by depth than by area, with temperature and identified salinity as important environmental variables. The highest diversity was observed at the deep chlorophyll maximum, while bacterial abundance and production peaked in the upper layers. The most of the identified genera belonged to Proteobacteria, with uncultured AEGEAN-169 and SAR116 lineages being dominant Alphaproteobacteria, and OM60 (NOR5) and SAR86 being dominant Gammaproteobacteria. Marine Synechococcus and Cyanobium-related species were predominant in the shallow layer, while Prochlorococcus MIT 9313 formed a higher portion below 50 m depth. Bacteroidota were represented mostly by uncultured lineages (NS4, NS5 and NS9 marine lineages). In contrast, Actinobacteriota were dominated by a candidatus genus Ca. Actinomarina. A large contribution of Nitrospinae was evident at the deepest investigated layer. Our results document that neural network analysis of environmental data may provide a novel insight into factors affecting picoplankton in the open sea environment.

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