Carbon and nutrient cycling between estuarine and adjacent coastal waters

Author(s):  
Louise Rewrie ◽  
Yoana Voynova ◽  
Holger Brix ◽  
Burkard Baschek

<p>Seasonal and annual nitrate and phosphate loads were determined from FerryBox measurements to investigate the high seasonal and inter-annual variability of carbon and nutrient exchange between the Elbe estuary and North Sea. At the inner continental shelf, high biological activity is driven by riverine nutrient inputs, which can contribute to the net carbon dioxide (CO<sub>2</sub>) uptake. It is possible that in tidal systems this newly formed phytoplankton is transported back into the estuary over the flood tide, and this organic matter can be remineralized in the intertidal region. At present, the influence of this tidally driven mechanism on the nutrient exports and primary production in the coastal zone is not fully characterized, hence carbon sources and sinks at the estuary-coastal boundary may not be well accounted for.</p><p>The coupling between nutrient inputs from the Elbe estuary to adjacent coastal waters and the subsequent biological activity are now being investigated with a high-frequency dataset provided by a FerryBox situated at the mouth of the estuary. The FerryBox continuously measures physical and biogeochemical parameters every 10 to 60 minutes. Prelimary seasonal and nutrient (nitrate and phosphate) loads from the Elbe estuary to the coastal waters were calculated with FerryBox data between 2014 and 2017. The nutrient loads exhibited high seasonal and inter-annual variability. For example, in summer 2014 nitrate loads reached 100 x 10<sup>7</sup> mol yr<sup>-1</sup> whereas, in summer 2017 nitrate loads were 50 x 10<sup>7</sup> mol yr<sup>-1</sup>, which cannot be explained by river discharge alone. Such changes in nutrient loads are likely to influence primary production rates in the adjacent coastal waters and impact CO<sub>2</sub> uptake and therefore carbon cycling.</p><p>Time-series analysis is employed to determine patterns in oxygen changes in relation to photosynthesis and respiration, along with nutrient fluctuations, between 2014 and 2017. Salinity is used to differentiate between the coastal and estuarine end members, with low and high salinity representing flood tide (estuarine waters) and ebb tide (coastal waters), respectively. Changes in dissolved oxygen concentrations are used to estimate primary production (P) and community respiration (R) rates in the water column. The P/R ratio provides the ability to classify the community into autotrophic and heterotrophic systems. Results of this analysis will show the role of varying nutrient loads in supporting primary production in the coastal waters, along with estimating net ecosystem metabolism, and therefore give us a better understanding of nutrient and carbon cycling. </p>

2015 ◽  
Vol 12 (1) ◽  
pp. 3910-3918 ◽  
Author(s):  
Dr Remon M Zaki ◽  
Prof Adel M. Kamal El-Dean ◽  
Dr Nermin A Marzouk ◽  
Prof Jehan A Micky ◽  
Mrs Rasha H Ahmed

 Incorporating selenium metal bonded to the pyridine nucleus was achieved by the reaction of selenium metal with 2-chloropyridine carbonitrile 1 in the presence of sodium borohydride as reducing agent. The resulting non isolated selanyl sodium salt was subjected to react with various α-halogenated carbonyl compounds to afford the selenyl pyridine derivatives 3a-f  which compounds 3a-d underwent Thorpe-Ziegler cyclization to give 1-amino-2-substitutedselenolo[2,3-b]pyridine compounds 4a-d, while the other compounds 3e,f failed to be cyclized. Basic hydrolysis of amino selenolo[2,3-b]pyridine carboxylate 4a followed by decarboxylation furnished the corresponding amino selenolopyridine compound 6 which was used as a versatile precursor for synthesis of other heterocyclic compound 7-16. All the newly synthesized compounds were established by elemental and spectral analysis (IR, 1H NMR) in addition to mass spectra for some of them hoping these compounds afforded high biological activity.


2018 ◽  
Vol 44 (3) ◽  
pp. 240-247 ◽  
Author(s):  
V. N. Egorov ◽  
V. N. Popovichev ◽  
S. B. Gulin ◽  
N. I. Bobko ◽  
N. Yu. Rodionova ◽  
...  

2021 ◽  
Vol 14 (8) ◽  
pp. 720
Author(s):  
Valeria Catalani ◽  
Michelle Botha ◽  
John Martin Corkery ◽  
Amira Guirguis ◽  
Alessandro Vento ◽  
...  

Designer benzodiazepines (DBZDs) represent a serious health concern and are increasingly reported in polydrug consumption-related fatalities. When new DBZDs are identified, very limited information is available on their pharmacodynamics. Here, computational models (i.e., quantitative structure-activity relationship/QSAR and Molecular Docking) were used to analyse DBZDs identified online by an automated web crawler (NPSfinder®) and to predict their possible activity/affinity on the gamma-aminobutyric acid A receptors (GABA-ARs). The computational software MOE was used to calculate 2D QSAR models, perform docking studies on crystallised GABA-A receptors (6HUO, 6HUP) and generate pharmacophore queries from the docking conformational results. 101 DBZDs were identified online by NPSfinder®. The validated QSAR model predicted high biological activity values for 41% of these DBDZs. These predictions were supported by the docking studies (good binding affinity) and the pharmacophore modelling confirmed the importance of the presence and location of hydrophobic and polar functions identified by QSAR. This study confirms once again the importance of web-based analysis in the assessment of drug scenarios (DBZDs), and how computational models could be used to acquire fast and reliable information on biological activity for index novel DBZDs, as preliminary data for further investigations.


2004 ◽  
Vol 385 (12) ◽  
pp. 1171-1175 ◽  
Author(s):  
Zhan-Yun Guo ◽  
Xiao-Yuan Jia ◽  
You-Min Feng

Abstract Insulin contains three disulfide bonds, one intrachain bond, A6–A11, and two interchain bonds, A7–B7 and A20–B19. Site-directed mutagenesis results (the two cysteine residues of disulfide A7–B7 were replaced by serine) showed that disulfide A7–B7 is crucial to both the structure and activity of insulin. However, chemical modification results showed that the insulin analogs still retained relatively high biological activity when A7Cys and B7Cys were modified by chemical groups with a negative charge. Did the negative charge of the modification groups restore the loss of activity and/or the disturbance of structure of these insulin analogs caused by deletion of disulfide A7–B7? To answer this question, an insulin analog with both A7Cys and B7Cys replaced by Glu, which has a long side-chain and a negative charge, was prepared by protein engineering, and its structure and activity were analyzed. Both the structure and activity of the present analog are very similar to that of the mutant with disulfide A7–B7 replaced by Ser, but significantly different from that of wild-type insulin. The present results suggest that removal of disulfide A7–B7 will result in serious loss of biological activity and the native conformation of insulin, even if the disulfide is replaced by residues with a negative charge.


1998 ◽  
Vol 18 (5) ◽  
pp. 2923-2931 ◽  
Author(s):  
Frederick R. Cross ◽  
Kristi Levine

ABSTRACT Many protein kinases are regulated by phosphorylation in the activation loop, which is required for enzymatic activity. Glutamic acid can substitute for phosphothreonine in some proteins activated by phosphorylation, but this substitution (T169E) at the site of activation loop phosphorylation in the Saccharomyces cerevisiae cyclin-dependent kinase (Cdk) Cdc28p blocks biological function and protein kinase activity. Using cycles of error-prone DNA amplification followed by selection for successively higher levels of function, we identified mutant versions of Cdc28p-T169E with high biological activity. The enzymatic and biological activity of the mutant Cdc28p was essentially normally regulated by cyclin, and the mutants supported normal cell cycle progression and regulation. Therefore, it is not a requirement for control of the yeast cell cycle that Cdc28p be cyclically phosphorylated and dephosphorylated. TheseCDC28 mutants allow viability in the absence of Cak1p, the essential kinase that phosphorylates Cdc28p-T169, demonstrating that T169 phosphorylation is the only essential function of Cak1p. Some growth defects remain in suppressed cak1 cdc28 strains carrying the mutant CDC28 genes, consistent with additional nonessential roles for CAK1.


Author(s):  
Robert Hall ◽  
Jennifer Tank ◽  
Michelle Baker ◽  
Emma Rosi-Marshall ◽  
Michael Grace ◽  
...  

Primary production and respiration are core functions of river ecosystems that in part determine the carbon balance. Gross primary production (GPP) is the total rate of carbon fixation by autotrophs such as algae and higher plants and is equivalent to photosynthesis. Ecosystem respiration (ER) measures rate at which organic carbon is mineralized to CO2 by all organisms in an ecosystem. Together these fluxes can indicate the base of the food web to support animal production (Marcarelli et al. 2011), can predict the cycling of other elements (Hall and Tank 2003), and can link ecosystems to global carbon cycling (Cole et al. 2007).


Eos ◽  
2018 ◽  
Vol 99 ◽  
Author(s):  
Sarah Stanley

Upwelling hinders an efficient method to estimate a key measure of biological productivity in coastal waters, but accounting for surface temperatures could boost accuracy.


1982 ◽  
Vol 37 (11-12) ◽  
pp. 1124-1129 ◽  
Author(s):  
Gunnar Bergström ◽  
Jan Tengö ◽  
Wolfgang Reith ◽  
Wittko Francke

Abstract 50 volatile constituents of the mandibular gland secretions in males and females of three species of Andrena bees, A. wilkella (Chr.), A. ovatula (K .) and A. ocreata (K .), have been identified. The secretions are made up of a series of spiroacetals of four different systems together with mono-terpenes and unbranched acyclic compounds. Many of the components, particularly several of the dominant ones, occur in both sexes of all three species, so that the volatile secretions are qualita­tively very similar. Females contain about 100 μg per individuum , which is 3-5 times the amount of the males’ secretions. Major spiroacetals are E,E- and Z ,E-2,8-dimethyl-1,7-dioxa-spiro[5.5]undecane and E,E-and Z,E-2-ethyl-7-methyl-1,6-dioxaspiro[4.5]undecane, while prominent monoterpenes are geraniol and citronellol. Straight chain hydrocarbons C17, C19, C21 and C23 occur in fairly large amounts, mostly with increasing concentrations. With respect to the quantitative distribution of components of minor concentration, the bouquet of A. wilkella is clearly distinguishable from A. ovatula and A. ocreata which from the morphological and ethological point of view are more closely related. Behaviour tests with A. wilkella indicate high biological activity of the main spiroacetal.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Lawrence W. Harding ◽  
Michael E. Mallonee ◽  
Elgin S. Perry ◽  
W. David Miller ◽  
Jason E. Adolf ◽  
...  

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