Using sedaDNA to reconstruct planktonic communities across 385’000 years old marine sedimentary core from a tropical sea.

Author(s):  
Ines Barrenechea Angeles ◽  
Luc Beaufort ◽  
Daniel Ariztegui ◽  
Jan Pawlowski

<p>Sedimentary ancient DNA (sedaDNA) is becoming a paleo-proxy of choice for many marine environments. However, there are few studies from tropical sites and even fewer from tropical marine sediments exposed to factors damaging the DNA such as elevated sea surface water temperature or UV radiation. Here, we report successful extraction of DNA from a marine sedimentary core retrieved from the Bismarck Sea, off New Papua Guinea, where the mean annual temperature is about 29°C. The core MD05-2920 covers the last 385 000 years. We analyzed samples from 20 layers, where the isotopic measures of δ<sup>18</sup>O isotopic composition of benthic foraminifera show significant palaeoceanographic changes from glacial to interglacial periods. We apply a metabarcoding approach using specific 18S primers for planktonic foraminifera, diatoms, and radiolarians. Even if the amount of DNA declines throughout the core, the patterns of successional changes in species communities of these three taxonomic groups are well archived. Our study shows that it is possible to reconstruct the planktonic community even from very old sedaDNA samples from a tropical marine sedimentary core.</p>

2003 ◽  
Vol 18 (4) ◽  
pp. n/a-n/a ◽  
Author(s):  
Aradhna K. Tripati ◽  
Margaret L. Delaney ◽  
James C. Zachos ◽  
Linda D. Anderson ◽  
Daniel C. Kelly ◽  
...  

2002 ◽  
Vol 53 (3) ◽  
pp. 313-322 ◽  
Author(s):  
Lionel E. Jackson ◽  
Charles Tarnocai ◽  
Robert J. Mott

AbstractFour paleosols were intersected in a core drilled into the colluvial fill of a largely buried meltwater channel that was last active during the youngest of the pre-Reid glaciation (0.99-0.78 Ma) in the Dawson Range, Yukon Territory. The paleosols are classified as Podzols. The sedimentary sequence and paleosols indicate that at least two middle Pleistocene glacial and interglacial periods are represented in the core. The mean annual temperature exceeded 0° C for thousands of years in the upland environment of the Dawson Range at 61° N during these interglacial periods.


1988 ◽  
Vol 11 ◽  
pp. 209-209
Author(s):  
Qin Dahe ◽  
N. W. Young

Fourteen shallow snow/firn cores were drilled with the Polar Ice Coring Office light-weight hand-coring auger in Wilkes Land, along a line approximately long. 111°E between lat. 66° and 74°S. Five of these cores, all between 20 and 30 m deep, are studied in detail in this paper: LJ, BJ, GC30, GC40 and GC46. The physical geographical conditions differ at these five stations, but the general trend is for mean annual accumulation rate and mean annual temperature to decrease farther south, with increasing elevation. At the southernmost station, GC46, the mean annual temperature is –52.5°C, and accumulation rate is 52 kg m−2 a−1.The density measurements of the snow/firn were made in a cold-room at temperatures from –14− to –18−C, by taking consecutive samples from the core and measuring the mass of each sample of known volume. The characteristics of the initial densification (to a density of 550 kg m−3) – variation in snow/firn density with depth, the densification rate of snow/firn, and the compactive viscosity coefficient of snow/firn – are studied, and the factors affecting this initial densification process are discussed.The following observations were made and conclusions reached:1.Plots of all the measurements, from each core, of density against depth showed three different patterns. The first type, typical of the coastal areas, shows a very great variability of density at shallow depth, reducing with an increase in depth. The second, typical of the high inland stations, shows a smaller scatter of densities at shallow depth, again reducing with an increase in depth. The third type is a pattern intermediate between these two. So, the range of density fluctuation with a depth range in any core is greater at the top of the core than at the bottom, and at the same depth in different cores the variation in density is greater where the mean annual temperature is higher.2.The snow/firn density increases with an increase in depth at all stations, and the densification rate is higher at stations with higher mean annual temperature.3.The mean density of snow/firn in the top 1 m decreases farther inland, and this decrease appears to be closely related to the decrease in temperature.4.The mean densification rate is compared with the mean annual temperature and the mean annual accumulation rate over the past 40 years in the most southerly cores. The mean annual temperature is found to be the more important factor affecting the densification rate in the surface snow/firn on the cold ice sheet.5.At each station, for ρ = 550 kg m−3, a linear relationship is found between log compactive-viscosity coefficient of snow/firn and mean annual temperature for a constant density. If only stations with a mean annual temperature below –25°C (i.e. no melt features are present in the stratigraphy) are considered, then these results from Wilkes Land are very similar to the results obtained by Nishimura and others (1983) from Mizuho Plateau, East Antarctica.


2002 ◽  
Vol 21 (2) ◽  
pp. 137-147 ◽  
Author(s):  
Christopher W. Smart

Abstract. Planktonic foraminiferal faunas have been studied from the Pleistocene of ODP Site 1073 (Leg 174A), New Jersey margin, NW Atlantic Ocean and their abundances have been compared in the >63 μm and >150 μm size-fractions from the same samples. Trends in the relative abundance of many species are similar in the two size-fractions, although the general level varies considerably. The mean abundance and ranges of Neogloboquadrina pachyderma (sinistral), N. pachyderma (dextral), Globorotalia inflata and Globigerina bulloides are greater in the >150 μm size-fraction compared with the >63 μm size-fraction. Turborotalita quinqueloba, Globigerinita uvula, G. glutinata, G. clarkei, and juvenile species are more abundant in the >63 μm size-fraction than the >150 μm size-fraction. Peaks (c. 60%) in abundance of G. uvula occur in the >63 μm size-fraction only, although the causes of these patterns are unclear. The data suggest that, in general, consistent palaeoclimatic/palaeoceanographic information is achieved by studying planktonic foraminiferal faunas from either size-fraction. However, because particular smaller species are either under-represented or even absent from the larger (>150 μm) size-fraction, the smaller (>63 μm) size-fraction must be included in studies of planktonic foraminifera. Furthermore, studies that involve planktonic foraminifera in the >63 μm size-fraction could provide different transfer function estimates for sea surface temperatures in areas where workers have only used larger (>125 μm and >150 μm) size-fractions.


1988 ◽  
Vol 11 ◽  
pp. 209 ◽  
Author(s):  
Qin Dahe ◽  
N. W. Young

Fourteen shallow snow/firn cores were drilled with the Polar Ice Coring Office light-weight hand-coring auger in Wilkes Land, along a line approximately long. 111°E between lat. 66° and 74°S. Five of these cores, all between 20 and 30 m deep, are studied in detail in this paper: LJ, BJ, GC30, GC40 and GC46. The physical geographical conditions differ at these five stations, but the general trend is for mean annual accumulation rate and mean annual temperature to decrease farther south, with increasing elevation. At the southernmost station, GC46, the mean annual temperature is –52.5°C, and accumulation rate is 52 kg m−2 a−1. The density measurements of the snow/firn were made in a cold-room at temperatures from –14− to –18−C, by taking consecutive samples from the core and measuring the mass of each sample of known volume. The characteristics of the initial densification (to a density of 550 kg m−3) – variation in snow/firn density with depth, the densification rate of snow/firn, and the compactive viscosity coefficient of snow/firn – are studied, and the factors affecting this initial densification process are discussed. The following observations were made and conclusions reached: 1. Plots of all the measurements, from each core, of density against depth showed three different patterns. The first type, typical of the coastal areas, shows a very great variability of density at shallow depth, reducing with an increase in depth. The second, typical of the high inland stations, shows a smaller scatter of densities at shallow depth, again reducing with an increase in depth. The third type is a pattern intermediate between these two. So, the range of density fluctuation with a depth range in any core is greater at the top of the core than at the bottom, and at the same depth in different cores the variation in density is greater where the mean annual temperature is higher. 2. The snow/firn density increases with an increase in depth at all stations, and the densification rate is higher at stations with higher mean annual temperature. 3. The mean density of snow/firn in the top 1 m decreases farther inland, and this decrease appears to be closely related to the decrease in temperature. 4. The mean densification rate is compared with the mean annual temperature and the mean annual accumulation rate over the past 40 years in the most southerly cores. The mean annual temperature is found to be the more important factor affecting the densification rate in the surface snow/firn on the cold ice sheet. 5. At each station, for ρ = 550 kg m−3, a linear relationship is found between log compactive-viscosity coefficient of snow/firn and mean annual temperature for a constant density. If only stations with a mean annual temperature below –25°C (i.e. no melt features are present in the stratigraphy) are considered, then these results from Wilkes Land are very similar to the results obtained by Nishimura and others (1983) from Mizuho Plateau, East Antarctica.


1984 ◽  
Vol 30 (104) ◽  
pp. 3-15 ◽  
Author(s):  
G. Holdsworth

AbstractA site situated close to the main divide of the Penny Ice Cap, Baffin Island was occupied in 1979 for the purpose of determining the suitability of this ice cap for providing proxy climatic data and other environmental time series for a span of 104a. A 20 m core was extracted and analysed for stable oxygen isotopes, tritium concentration, pH, electrolytic conductivity, major ion concentrations, and particulate concentration. An adjacent dedicated shallow core was analysed for pollen content to determine if a significant seasonal variation in the pollen rain existed. From these measurements, and from the observations made on the stratigraphic character of the core, the mean net accumulation rate over the approximately 30 year period covered by the core is found to be about 0.43 m water equivalent per year. This is in agreement with a single value determined 26 years earlier at a nearby site (Ward and Baird, 1954). The mean annual temperature in the bore hole was found to be close to −14.4° C, possibly some 2–5 deg warmer than the expected mean annual surface air temperature at the site. This difference is due to the expulsion of latent heat upon freezing of melt water at depth in the snow-pack which gives rise to the many ice layers observed in the core. The percentage thickness of ice layers per year may be correlated with summer temperatures.Total ice depths were measured using a 620 MHz radar echo-sounder. In the vicinity of the divide, over an area of 1 km2, the ice depths vary from about 460 to 515 m. These values compare favourably with values determined from an airborne radar depth-sounding flight carried out over the ice cap by a joint U.S.–Danish mission operating out of Søndre Strømfjord, Greenland. The data suggest that the ice-cap divide would be a worthwhile location to deep core drill with an expected useful coverage of at least the Holocene period.


1984 ◽  
Vol 30 (104) ◽  
pp. 3-15 ◽  
Author(s):  
G. Holdsworth

AbstractA site situated close to the main divide of the Penny Ice Cap, Baffin Island was occupied in 1979 for the purpose of determining the suitability of this ice cap for providing proxy climatic data and other environmental time series for a span of 104 a. A 20 m core was extracted and analysed for stable oxygen isotopes, tritium concentration, pH, electrolytic conductivity, major ion concentrations, and particulate concentration. An adjacent dedicated shallow core was analysed for pollen content to determine if a significant seasonal variation in the pollen rain existed. From these measurements, and from the observations made on the stratigraphic character of the core, the mean net accumulation rate over the approximately 30 year period covered by the core is found to be about 0.43 m water equivalent per year. This is in agreement with a single value determined 26 years earlier at a nearby site (Ward and Baird, 1954). The mean annual temperature in the bore hole was found to be close to −14.4° C, possibly some 2–5 deg warmer than the expected mean annual surface air temperature at the site. This difference is due to the expulsion of latent heat upon freezing of melt water at depth in the snow-pack which gives rise to the many ice layers observed in the core. The percentage thickness of ice layers per year may be correlated with summer temperatures.Total ice depths were measured using a 620 MHz radar echo-sounder. In the vicinity of the divide, over an area of 1 km2, the ice depths vary from about 460 to 515 m. These values compare favourably with values determined from an airborne radar depth-sounding flight carried out over the ice cap by a joint U.S.–Danish mission operating out of Søndre Strømfjord, Greenland. The data suggest that the ice-cap divide would be a worthwhile location to deep core drill with an expected useful coverage of at least the Holocene period.


2018 ◽  
Vol 1 (March 2018) ◽  
Author(s):  
S.A Okanlawon ◽  
O.O Odunjo ◽  
S.A Olaniyan

This study examined Residents’ evaluation of turning transport infrastructure (road) to spaces for holding social ceremonies in the indigenous residential zone of Ogbomoso, Oyo State, Nigeria. Upon stratifying the city into the three identifiable zones, the core, otherwise known as the indigenous residential zone was isolated for study. Of the twenty (20) political wards in the two local government areas of the town, fifteen (15) wards that were located in the indigenous zone constituted the study area. Respondents were selected along one out of every three (33.3%) of the Trunk — C (local) roads being the one mostly used for the purpose in the study area. The respondents were the residents, commercial motorists, commercial motorcyclists, and celebrants. Six hundred and forty-two (642) copies of questionnaire were administered and harvested on the spot. The Mean Analysis generated from the respondents’ rating of twelve perceived hazards listed in the questionnaire were then used to determine respondents’ most highly rated perceived consequences of the practice. These were noisy environment, Blockage of drainage by waste, and Endangering the life of the sick on the way to hospital; the most highly rated reasons why the practice came into being; and level of acceptability of the practice which was found to be very unacceptable in the study area. Policy makers should therefore focus their attention on strict enforcement of the law prohibiting the practice in order to ensure more cordial relationship among the citizenry, seeing citizens’ unacceptability of the practice in the study area.


2021 ◽  
Vol 13 (12) ◽  
pp. 6910
Author(s):  
Adil Dilawar ◽  
Baozhang Chen ◽  
Arfan Arshad ◽  
Lifeng Guo ◽  
Muhammad Irfan Ehsan ◽  
...  

Here, we provided a comprehensive analysis of long-term drought and climate extreme patterns in the agro ecological zones (AEZs) of Pakistan during 1980–2019. Drought trends were investigated using the standardized precipitation evapotranspiration index (SPEI) at various timescales (SPEI-1, SPEI-3, SPEI-6, and SPEI-12). The results showed that droughts (seasonal and annual) were more persistent and severe in the southern, southwestern, southeastern, and central parts of the region. Drought exacerbated with slopes of −0.02, −0.07, −0.08, −0.01, and −0.02 per year. Drought prevailed in all AEZs in the spring season. The majority of AEZs in Pakistan’s southern, middle, and southwestern regions had experienced substantial warming. The mean annual temperature minimum (Tmin) increased faster than the mean annual temperature maximum (Tmax) in all zones. Precipitation decreased in the southern, northern, central, and southwestern parts of the region. Principal component analysis (PCA) revealed a robust increase in temperature extremes with a variance of 76% and a decrease in precipitation extremes with a variance of 91% in the region. Temperature and precipitation extremes indices had a strong Pearson correlation with drought events. Higher temperatures resulted in extreme drought (dry conditions), while higher precipitation levels resulted in wetting conditions (no drought) in different AEZs. In most AEZs, drought occurrences were more responsive to precipitation. The current findings are helpful for climate mitigation strategies and specific zonal efforts are needed to alleviate the environmental and societal impacts of drought.


2021 ◽  
Vol 2 (1) ◽  
Author(s):  
Niels J. de Winter ◽  
Inigo A. Müller ◽  
Ilja J. Kocken ◽  
Nicolas Thibault ◽  
Clemens V. Ullmann ◽  
...  

AbstractSeasonal variability in sea surface temperatures plays a fundamental role in climate dynamics and species distribution. Seasonal bias can also severely compromise the accuracy of mean annual temperature reconstructions. It is therefore essential to better understand seasonal variability in climates of the past. Many reconstructions of climate in deep time neglect this issue and rely on controversial assumptions, such as estimates of sea water oxygen isotope composition. Here we present absolute seasonal temperature reconstructions based on clumped isotope measurements in bivalve shells which, critically, do not rely on these assumptions. We reconstruct highly precise monthly sea surface temperatures at around 50 °N latitude from individual oyster and rudist shells of the Campanian greenhouse period about 78 million years ago, when the seasonal range at 50 °N comprised 15 to 27 °C. In agreement with fully coupled climate model simulations, we find that greenhouse climates outside the tropics were warmer and more seasonal than previously thought. We conclude that seasonal bias and assumptions about seawater composition can distort temperature reconstructions and our understanding of past greenhouse climates.


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