Beyond Cloud: A Fused Optic and SAR Based Solution to Monitor Crop Health

2021 ◽  
Author(s):  
Brianna Pagán ◽  
Adekunle Ajayi ◽  
Mamadou Krouma ◽  
Jyotsna Budideti ◽  
Omar Tafsi
Keyword(s):  
Machine Learning ◽  
Satellite Imagery ◽  
Cloud Cover ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Learning Approaches ◽  
Area Index ◽  
Spatial And Temporal Scales ◽  
Field Level ◽  
Crop Health

<p>The value of satellite imagery to monitor crop health in near-real time continues to exponentially grow as more missions are launched making data available at higher spatial and temporal scales. Yet cloud cover remains an issue for utilizing vegetation indexes (VIs) solely based on optic imagery, especially in certain regions and climates. Previous research has proven the ability to reconstruct VIs like the Normalized Difference Vegetation Index (NDVI) and Leaf Area Index (LAI) by leveraging synthetic aperture radar (SAR) datasets, which are not inhibited by cloud cover. Publicly available data from SAR missions like Sentinel-1 at relatively decent spatial resolutions present the opportunity for more affordable options for agriculture users to integrate satellite imagery in their day to day operations. Previous research has successfully reconstructed optic VIs (i.e. from Sentinel-2) with SAR data (i.e. from Sentinel-1) leveraging various machine learning approaches for a limited number of crop types. However, these efforts normally train on individual pixels rather than leveraging information at a field level. </p><p>Here we present Beyond Cloud, a product which is the first to leverage computer vision and machine learning approaches in order to provide fused optic and SAR based crop health information. Field level learning is especially well-suited for inherently noisy SAR datasets. Several use cases are presented over agriculture fields located throughout the United Kingdom, France and Belgium, where cloud cover limits optic based solutions to as little as 2-3 images per growing season. Preliminary efforts for additional features to the product including automated crop and soil type detection are also discussed. Beyond Cloud can be accessed via a simple API which makes integration of the results easy for existing dashboards and smart-ag tools. Overall, these efforts promote the accessibility of satellite imagery for real agriculture end users.</p><p> </p>

scholarly journals Generation and Evaluation of LAI and FPAR Products from Himawari-8 Advanced Himawari Imager (AHI) Data

2019 ◽  
Vol 11 (13) ◽  
pp. 1517 ◽  
Author(s):  
Yepei Chen ◽  
Kaimin Sun ◽  
Chi Chen ◽  
Ting Bai ◽  
Taejin Park ◽  
...  
Keyword(s):  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Climate Change Impacts ◽  
Field Measurements ◽  
Geostationary Satellite ◽  
Vegetation Phenology ◽  
Area Index ◽  
Spatial And Temporal Scales ◽  
Moderate Resolution Imaging Spectroradiometer ◽  
Modis Lai

Leaf area index (LAI) and fraction of photosynthetically active radiation (FPAR) absorbed by vegetation are two of the essential biophysical variables used in most global models of climate, hydrology, biogeochemistry, and ecology. Most LAI/FPAR products are retrieved from non-geostationary satellite observations. Long revisit times and cloud/cloud shadow contamination lead to temporal and spatial gaps in such LAI/FPAR products. For more effective use in monitoring of vegetation phenology, climate change impacts, disaster trend etc., in a timely manner, it is critical to generate LAI/FPAR with less cloud/cloud shadow contamination and at higher temporal resolution—something that is feasible with geostationary satellite data. In this paper, we estimate the geostationary Himawari-8 Advanced Himawari Imager (AHI) LAI/FPAR fields by training artificial neural networks (ANNs) with Himawari-8 normalized difference vegetation index (NDVI) and moderate resolution imaging spectroradiometer (MODIS) LAI/FPAR products for each biome type. Daily cycles of the estimated AHI LAI/FPAR products indicate that these are stable at 10-min frequency during the day. Comprehensive evaluations were carried out for the different biome types at different spatial and temporal scales by utilizing the MODIS LAI/FPAR products and the available field measurements. These suggest that the generated Himawari-8 AHI LAI/FPAR fields were spatially and temporally consistent with the benchmark MODIS LAI/FPAR products. We also evaluated the AHI LAI/FPAR products for their potential to accurately monitor the vegetation phenology—the results show that AHI LAI/FPAR products closely match the phenological development captured by the MODIS products.

scholarly journals Mapping Biophysical Parameters for Land Surface Modeling over the Continental US Using MODIS and Landsat

2015 ◽  
Vol 2015 ◽  
pp. 1-11 ◽  
Author(s):  
Lahouari Bounoua ◽  
Ping Zhang ◽  
Kurtis Thome ◽  
Jeffrey Masek ◽  
Abdelmounaime Safia ◽  
...  
Keyword(s):  
Land Cover ◽  
Land Surface ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Climate Modeling ◽  
Surface Fluxes ◽  
Biophysical Parameters ◽  
Area Index ◽  
Spatial And Temporal Scales ◽  
The North

In terms of the space cities occupy, urbanization appears as a minor land transformation. However, it permanently modifies land’s ecological functions, altering its carbon, energy, and water fluxes. It is therefore necessary to develop a land cover characterization at fine spatial and temporal scales to capture urbanization’s effects on surface fluxes. We develop a series of biophysical vegetation parameters such as the fraction of photosynthetically active radiation, leaf area index, vegetation greenness fraction, and roughness length over the continental US using MODIS and Landsat products for 2001. A 13-class land cover map was developed at a climate modeling grid (CMG) merging the 500 m MODIS land cover and the 30 m impervious surface area from the National Land Cover Database. The landscape subgrid heterogeneity was preserved using fractions of each class from the 500 m and 30 m into the CMG. Biophysical parameters were computed using the 8-day composite Normalized Difference Vegetation Index produced by the North American Carbon Program. In addition to urban impact assessments, this dataset is useful for the computation of surface fluxes in land, vegetation, and urban models and is expected to be widely used in different land cover and land use change applications.

Can High-Resolution Satellite Multispectral Imagery Be Used to Phenotype Canopy Traits and Yield Potential in Field Conditions?

2021 ◽  
Vol 64 (3) ◽  
pp. 879-891
Author(s):  
Sindhuja Sankaran ◽  
Afef Marzougui ◽  
J. Preston Hurst ◽  
Chongyuan Zhang ◽  
James C. Schnable ◽  
...  
Keyword(s):  
Machine Learning ◽  
High Resolution ◽  
Satellite Imagery ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Vegetation Indices ◽  
Yield Potential ◽  
Breeding Programs ◽  
Time Points ◽  
High Resolution Satellite Imagery

HighlightsVegetation indices (NDVI, GNDVI, and SAVI) extracted from high-resolution satellite imagery were significantly associated with vegetation indices extracted from UAV imagery.High-resolution satellite data can be used to predict maize yield at breeding plot scale.Breeding plot sizes and the variability between maize genotypes may be associated with prediction accuracies.Abstract. The recent availability of high spatial and temporal resolution satellite imagery has widened its applications in agriculture. Plant breeding and genetics programs are currently adopting unmanned aerial vehicle (UAV) based imagery data as a complement to ground data collection. With breeding trials across multiple geographic locations, UAV imaging is not always convenient. Hence, we anticipate that, similar to UAV imaging, phenotyping of individual test plots from high-resolution satellite imagery may also provide value to plant genetics and breeding programs. In this study, high spatial resolution satellite imagery (~38 to 48 cm pixel-1) was compared to imagery acquired using a UAV for its ability to phenotype maize grown in two-row and six-row breeding plots. Statistics (mean, median, sum) of color (red, green, blue), near-infrared, and vegetation indices such as normalized difference vegetation index (NDVI), green normalized difference vegetation index (GNDVI), and soil adjusted vegetation index (SAVI) were extracted from imagery from both sources (UAV and satellite) for comparison at three time points. In general, a strong correlation between satellite and UAV imagery extracted NDVI, GNDVI, and SAVI features (especially with mean and median statistics, p < 0.001) was observed at different time points. The correlation of both UAV and satellite image features with yield potential was maximum (p < 0.001) at the third time point (milk/dough growth stages). For example, Pearson’s correlation coefficients between mean NDVI, GNDVI, and SAVI features with yield potential were 0.52, 0.54, and 0.51 for data derived from UAV imagery, and 0.34, 0.41, and 0.40 for data derived from satellite imagery, respectively. Machine learning algorithms, including least absolute shrinkage and selection operator (Lasso) regression, were evaluated for yield prediction using vegetation index features that were significantly correlated with observed yield. The relationship between satellite imagery with crop performance can be a function of plot size in addition to crop variability. Nevertheless, with the ongoing improvement of satellite technologies, there is a possibility for the integration of satellite data into breeding programs, thus improving phenotyping efficiencies. Keywords: Image processing, Machine learning, Plant breeding, Statistical analysis, Unmanned aerial vehicles.

scholarly journals Corn Nitrogen Status Diagnosis with an Innovative Multi-Parameter Crop Circle Phenom Sensing System

2021 ◽  
Vol 13 (3) ◽  
pp. 401
Author(s):  
Cadan Cummings ◽  
Yuxin Miao ◽  
Gabriel Dias Paiao ◽  
Shujiang Kang ◽  
Fabián G. Fernández
Keyword(s):  
Machine Learning ◽  
Chlorophyll Content ◽  
Vegetation Index ◽  
Soil Drainage ◽  
Management Information ◽  
Area Index ◽  
Sensing System ◽  
Extreme Gradient Boosting ◽  
Split Plot ◽  
N Status

Accurate and non-destructive in-season crop nitrogen (N) status diagnosis is important for the success of precision N management (PNM). Several active canopy sensors (ACS) with two or three spectral wavebands have been used for this purpose. The Crop Circle Phenom sensor is a new integrated multi-parameter proximal ACS system for in-field plant phenomics with the capability to measure reflectance, structural, and climatic attributes. The objective of this study was to evaluate this multi-parameter Crop Circle Phenom sensing system for in-season diagnosis of corn (Zea mays L.) N status across different soil drainage and tillage systems under variable N supply conditions. The four plant metrics used to approximate in-season N status consist of aboveground biomass (AGB), plant N concentration (PNC), plant N uptake (PNU), and N nutrition index (NNI). A field experiment was conducted in Wells, Minnesota during the 2018 and the 2019 growing seasons with a split-split plot design replicated four times with soil drainage (drained and undrained) as main block, tillage (conventional, no-till, and strip-till) as split plot, and pre-plant N (PPN) rate (0 to 225 in 45 kg ha−1 increment) as the split-split plot. Crop Circle Phenom measurements alongside destructive whole plant samples were collected at V8 +/−1 growth stage. Proximal sensor metrics were used to construct regression models to estimate N status indicators using simple regression (SR) and eXtreme Gradient Boosting (XGB) models. The sensor derived indices tested included normalized difference vegetation index (NDVI), normalized difference red edge (NDRE), estimated canopy chlorophyll content (eCCC), estimated leaf area index (eLAI), ratio vegetation index (RVI), canopy chlorophyll content index (CCCI), fractional photosynthetically active radiation (fPAR), and canopy and air temperature difference (ΔTemp). Management practices such as drainage, tillage, and PPN rate were also included to determine the potential improvement in corn N status diagnosis. Three of the four replicated drained and undrained blocks were randomly selected as training data, and the remaining drained and undrained blocks were used as testing data. The results indicated that SR modeling using NDVI would be sufficient for estimating AGB compared to more complex machine learning methods. Conversely, PNC, PNU, and NNI all benefitted from XGB modeling based on multiple inputs. Among different approaches of XGB modeling, combining management information and Crop Circle Phenom measurements together increased model performance for predicting each of the four plant N metrics compared with solely using sensing data. The PPN rate was the most important management metric for all models compared to drainage and tillage information. Combining Crop Circle Phenom sensor parameters and management information is a promising strategy for in-season diagnosis of corn N status. More studies are needed to further evaluate this new integrated sensing system under diverse on-farm conditions and to test other machine learning models.

scholarly journals Identifying Urban Poverty Using High-Resolution Satellite Imagery and Machine Learning Approaches: Implications for Housing Inequality

Land ◽  
2021 ◽  
Vol 10 (6) ◽  
pp. 648
Author(s):  
Guie Li ◽  
Zhongliang Cai ◽  
Yun Qian ◽  
Fei Chen
Keyword(s):  
Machine Learning ◽  
High Resolution ◽  
Satellite Imagery ◽  
Low Income ◽  
Urban Poverty ◽  
Image Features ◽  
Housing Affordability ◽  
Learning Approaches ◽  
Housing Inequality ◽  
High Resolution Satellite Imagery

Enriching Asian perspectives on the rapid identification of urban poverty and its implications for housing inequality, this paper contributes empirical evidence about the utility of image features derived from high-resolution satellite imagery and machine learning approaches for identifying urban poverty in China at the community level. For the case of the Jiangxia District and Huangpi District of Wuhan, image features, including perimeter, line segment detector (LSD), Hough transform, gray-level cooccurrence matrix (GLCM), histogram of oriented gradients (HoG), and local binary patterns (LBP), are calculated, and four machine learning approaches and 25 variables are applied to identify urban poverty and relatively important variables. The results show that image features and machine learning approaches can be used to identify urban poverty with the best model performance with a coefficient of determination, R2, of 0.5341 and 0.5324 for Jiangxia and Huangpi, respectively, although some differences exist among the approaches and study areas. The importance of each variable differs for each approach and study area; however, the relatively important variables are similar. In particular, four variables achieved relatively satisfactory prediction results for all models and presented obvious differences in varying communities with different poverty levels. Housing inequality within low-income neighborhoods, which is a response to gaps in wealth, income, and housing affordability among social groups, is an important manifestation of urban poverty. Policy makers can implement these findings to rapidly identify urban poverty, and the findings have potential applications for addressing housing inequality and proving the rationality of urban planning for building a sustainable society.

scholarly journals Mapping the Groundwater Level and Soil Moisture of a Montane Peat Bog Using UAV Monitoring and Machine Learning

2021 ◽  
Vol 13 (5) ◽  
pp. 907
Author(s):  
Theodora Lendzioch ◽  
Jakub Langhammer ◽  
Lukáš Vlček ◽  
Robert Minařík
Keyword(s):  
Machine Learning ◽  
Soil Moisture ◽  
Spatial Data ◽  
Groundwater Level ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Sampling Strategy ◽  
Peat Bog ◽  
Strong Impact ◽  
Ground Truth Data

One of the best preconditions for the sufficient monitoring of peat bog ecosystems is the collection, processing, and analysis of unique spatial data to understand peat bog dynamics. Over two seasons, we sampled groundwater level (GWL) and soil moisture (SM) ground truth data at two diverse locations at the Rokytka Peat bog within the Sumava Mountains, Czechia. These data served as reference data and were modeled with a suite of potential variables derived from digital surface models (DSMs) and RGB, multispectral, and thermal orthoimages reflecting topomorphometry, vegetation, and surface temperature information generated from drone mapping. We used 34 predictors to feed the random forest (RF) algorithm. The predictor selection, hyperparameter tuning, and performance assessment were performed with the target-oriented leave-location-out (LLO) spatial cross-validation (CV) strategy combined with forward feature selection (FFS) to avoid overfitting and to predict on unknown locations. The spatial CV performance statistics showed low (R2 = 0.12) to high (R2 = 0.78) model predictions. The predictor importance was used for model interpretation, where temperature had strong impact on GWL and SM, and we found significant contributions of other predictors, such as Normalized Difference Vegetation Index (NDVI), Normalized Difference Index (NDI), Enhanced Red-Green-Blue Vegetation Index (ERGBVE), Shape Index (SHP), Green Leaf Index (GLI), Brightness Index (BI), Coloration Index (CI), Redness Index (RI), Primary Colours Hue Index (HI), Overall Hue Index (HUE), SAGA Wetness Index (TWI), Plan Curvature (PlnCurv), Topographic Position Index (TPI), and Vector Ruggedness Measure (VRM). Additionally, we estimated the area of applicability (AOA) by presenting maps where the prediction model yielded high-quality results and where predictions were highly uncertain because machine learning (ML) models make predictions far beyond sampling locations without sampling data with no knowledge about these environments. The AOA method is well suited and unique for planning and decision-making about the best sampling strategy, most notably with limited data.

scholarly journals Detecting Forest Degradation in the Three-North Forest Shelterbelt in China from Multi-Scale Satellite Images

2021 ◽  
Vol 13 (6) ◽  
pp. 1131
Author(s):  
Tao Yu ◽  
Pengju Liu ◽  
Qiang Zhang ◽  
Yi Ren ◽  
Jingning Yao
Keyword(s):  
Remote Sensing ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Net Primary Production ◽  
Remote Sensing Data ◽  
Forest Degradation ◽  
Observation Data ◽  
Area Index ◽  
Sensing Data ◽  
Multi Scale

Detecting forest degradation from satellite observation data is of great significance in revealing the process of decreasing forest quality and giving a better understanding of regional or global carbon emissions and their feedbacks with climate changes. In this paper, a quick and applicable approach was developed for monitoring forest degradation in the Three-North Forest Shelterbelt in China from multi-scale remote sensing data. Firstly, Normalized Difference Vegetation Index (NDVI), Enhanced Vegetation Index (EVI), Ratio Vegetation Index (RVI), Leaf Area Index (LAI), Fraction of Photosynthetically Active Radiation (FPAR) and Net Primary Production (NPP) from remote sensing data were selected as the indicators to describe forest degradation. Then multi-scale forest degradation maps were obtained by adopting a new classification method using time series MODerate Resolution Imaging Spectroradiometer (MODIS) and Landsat Enhanced Thematic Mapper Plus (ETM+) images, and were validated with ground survey data. At last, the criteria and indicators for monitoring forest degradation from remote sensing data were discussed, and the uncertainly of the method was analyzed. Results of this paper indicated that multi-scale remote sensing data have great potential in detecting regional forest degradation.

scholarly journals An Effective Method for Generating Spatiotemporally Continuous 30 m Vegetation Products

2021 ◽  
Vol 13 (4) ◽  
pp. 719
Author(s):  
Xiuxia Li ◽  
Shunlin Liang ◽  
Huaan Jin
Keyword(s):  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Continuous Data ◽  
Landsat Data ◽  
Area Index ◽  
Free Data ◽  
Moderate Resolution ◽  
Resolution Imaging ◽  
Moderate Resolution Imaging Spectroradiometer ◽  
Resolution Data

Leaf area index (LAI) and normalized difference vegetation index (NDVI) are key parameters for various applications. However, due to sensor tradeoff and cloud contaminations, these data are often temporally intermittent and spatially discontinuous. To address the discontinuities, this study proposed a method based on spectral matching of 30 m discontinuous values from Landsat data and 500 m temporally continuous values from Moderate-resolution Imaging Spectroradiometer (MODIS) data. Experiments have proven that the proposed method can effectively yield spatiotemporally continuous vegetation products at 30 m spatial resolution. The results for three different study areas with NDVI and LAI showed that the method performs well in restoring the time series, fills in the missing data, and reasonably predicts the images. Remarkably, the proposed method could address the issue when no cloud-free data pairs are available close to the prediction date, because of the temporal information “borrowed” from coarser resolution data. Hence, the proposed method can make better use of partially obscured images. The reconstructed spatiotemporally continuous data have great potential for monitoring vegetation, agriculture, and environmental dynamics.

scholarly journals Estimating the Biomass of Waterhyacinth (Eichhornia crassipes) Using the Normalized Difference Vegetation Index Derived from Simulated Landsat 5 TM

2015 ◽  
Vol 8 (2) ◽  
pp. 203-211 ◽  
Author(s):  
Wilfredo Robles ◽  
John D. Madsen ◽  
Ryan M. Wersal
Keyword(s):  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Simulated Data ◽  
Water Bodies ◽  
Biomass Estimation ◽  
Aquatic Weed ◽  
Target Area ◽  
Data Set ◽  
Area Index ◽  
Landsat 5 Tm

Waterhyacinth is a free-floating aquatic weed that is considered a nuisance worldwide. Excessive growth of waterhyacinth limits recreational use of water bodies as well as interferes with many ecological processes. Accurate estimates of biomass are useful to assess the effectiveness of control methods to manage this aquatic weed. While large water bodies require significant labor inputs with respect to ground-truth surveys, available technology like remote sensing could be capable of providing temporal and spatial information from a target area at a much reduced cost. Studies were conducted at Lakes Columbus and Aberdeen (Mississippi) during the growing seasons of 2005 and 2006 over established populations of waterhyacinth. The objective was to estimate biomass based on nondestructive methods using the normalized difference vegetation index (NDVI) derived from Landsat 5 TM simulated data. Biomass was collected monthly using a 0.10m2 quadrat at 25 randomly-located locations at each site. Morphometric plant parameters were also collected to enhance the use of NDVI for biomass estimation. Reflectance measurements using a hyperspectral sensor were taken every month at each site during biomass collection. These spectral signatures were then transformed into a Landsat 5 TM simulated data set using MatLab® software. A positive linear relationship (r2 = 0.28) was found between measured biomass of waterhyacinth and NDVI values from the simulated dataset. While this relationship appears weak, the addition of morphological parameters such as leaf area index (LAI) and leaf length enhanced the relationship yielding an r2 = 0.66. Empirically, NDVI saturates at high LAI, which may limit its use to estimate the biomass in very dense vegetation. Further studies using NDVI calculated from narrower spectral bands than those contained in Landsat 5 TM are recommended.

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