scholarly journals Photosynthesis–irradiance parameters of marine phytoplankton: synthesis of a global data set

2018 ◽  
Vol 10 (1) ◽  
pp. 251-266 ◽  
Author(s):  
Heather A. Bouman ◽  
Trevor Platt ◽  
Martina Doblin ◽  
Francisco G. Figueiras ◽  
Kristinn Gudmundsson ◽  
...  

Abstract. The photosynthetic performance of marine phytoplankton varies in response to a variety of factors, environmental and taxonomic. One of the aims of the MArine primary Production: model Parameters from Space (MAPPS) project of the European Space Agency is to assemble a global database of photosynthesis–irradiance (P-E) parameters from a range of oceanographic regimes as an aid to examining the basin-scale variability in the photophysiological response of marine phytoplankton and to use this information to improve the assignment of P-E parameters in the estimation of global marine primary production using satellite data. The MAPPS P-E database, which consists of over 5000 P-E experiments, provides information on the spatio-temporal variability in the two P-E parameters (the assimilation number, PmB, and the initial slope, αB, where the superscripts B indicate normalisation to concentration of chlorophyll) that are fundamental inputs for models (satellite-based and otherwise) of marine primary production that use chlorophyll as the state variable. Quality-control measures consisted of removing samples with abnormally high parameter values and flags were added to denote whether the spectral quality of the incubator lamp was used to calculate a broad-band value of αB. The MAPPS database provides a photophysiological data set that is unprecedented in number of observations and in spatial coverage. The database will be useful to a variety of research communities, including marine ecologists, biogeochemical modellers, remote-sensing scientists and algal physiologists. The compiled data are available at https://doi.org/10.1594/PANGAEA.874087 (Bouman et al., 2017).

2017 ◽  
Author(s):  
Heather A. Bouman ◽  
Trevor Platt ◽  
Martina Doblin ◽  
Francisco G. Figueiras ◽  
Kristinn Gudmudsson ◽  
...  

Abstract. The photosynthetic performance of marine phytoplankton varies in response to a variety of factors, environmental and taxonomic. One of the aims of the MArine primary Production: model Parameters from Space (MAPPS) project of the European Space Agency is to assemble a global database of photosynthesis-irradiance (P-E) parameters from a range of oceanographic regimes as an aid to examining the basin-scale variability in the photophysiological response of marine phytoplankton and to use this information to improve the assignment of P-E parameters in the estimation of global marine primary production using satellite data. The MAPPS P-E Database, which consists of over 5000 P-E experiments, provides information on the spatio-temporal variability in the two P-E parameters (the assimilation number, PmB, and the initial slope, αB, where the superscripts B indicate normalisation to concentration of chlorophyll) that are fundamental inputs for models (satellite-based and otherwise) of marine primary production that use chlorophyll as the state variable. Quality-control measures consisted of removing samples with abnormally-high parameter values and flags were added to denote whether the spectral quality of the incubator lamp was used to calculate a broad-band value of αB. The MAPPS database provides a photophysiological dataset that is unprecedented in number of observations and in spatial coverage. The database would be useful to a variety of research communities, including marine ecologists, biogeochemical modellers, remote-sensing scientists and algal physiologists. The compiled data are available at https://doi.org/10.1594/PANGAEA.874087 (Bouman et al., 2017).


2020 ◽  
Vol 12 (5) ◽  
pp. 826 ◽  
Author(s):  
Gemma Kulk ◽  
Trevor Platt ◽  
James Dingle ◽  
Thomas Jackson ◽  
Bror F. Jönsson ◽  
...  

Primary production by marine phytoplankton is one of the largest fluxes of carbon on our planet. In the past few decades, considerable progress has been made in estimating global primary production at high spatial and temporal scales by combining in situ measurements of primary production with remote-sensing observations of phytoplankton biomass. One of the major challenges in this approach lies in the assignment of the appropriate model parameters that define the photosynthetic response of phytoplankton to the light field. In the present study, a global database of in situ measurements of photosynthesis versus irradiance (P-I) parameters and a 20-year record of climate quality satellite observations were used to assess global primary production and its variability with seasons and locations as well as between years. In addition, the sensitivity of the computed primary production to potential changes in the photosynthetic response of phytoplankton cells under changing environmental conditions was investigated. Global annual primary production varied from 38.8 to 42.1 Gt C yr − 1 over the period of 1998–2018. Inter-annual changes in global primary production did not follow a linear trend, and regional differences in the magnitude and direction of change in primary production were observed. Trends in primary production followed directly from changes in chlorophyll-a and were related to changes in the physico-chemical conditions of the water column due to inter-annual and multidecadal climate oscillations. Moreover, the sensitivity analysis in which P-I parameters were adjusted by ±1 standard deviation showed the importance of accurately assigning photosynthetic parameters in global and regional calculations of primary production. The assimilation number of the P-I curve showed strong relationships with environmental variables such as temperature and had a practically one-to-one relationship with the magnitude of change in primary production. In the future, such empirical relationships could potentially be used for a more dynamic assignment of photosynthetic rates in the estimation of global primary production. Relationships between the initial slope of the P-I curve and environmental variables were more elusive.


2005 ◽  
Vol 17 (1) ◽  
pp. 33-45 ◽  
Author(s):  
DARYL MOORHEAD ◽  
JAMIE SCHMELING ◽  
IAN HAWES

A model was used to simulate primary production of benthic microbial mats in Lake Hoare, southern Victoria Land, Antarctica, and to compare potential benthic to planktonic production. Photosynthetic and respiratory characteristics of mats from five depths in the lake were extrapolated across depth, surface area and time, to estimate whole-lake, annual net primary production. Variation in under-ice light regimes resulting from changes in ice thickness and transparency, and light extinction in the water column was examined, and an uncertainty analysis of key model parameters performed. Daily mat production estimates were 0.98–37.83 mg C m−2 d−1, depending on depth and PAR, whereas in situ production of phytoplankton averaged 15% of this. Annual patterns of mat production achieved maximum rates of 15–16 g C m−2 y−1 at 10 m depth when ≥ 5% of ambient PAR was transmitted through the ice covering the lake; observed transmittance values were usually ≤ 5%. Increasing underwater PAR had little effect above 5–7% transmittance, as photosynthesis became saturated at this level. Uncertainties in estimates of maximum photosynthetic rate (Pmax), initial slope of photosynthetic-light response (α) and maximum respiration rate (Rmax) explained 72–99% of uncertainty in model behaviour; Pmax was increasingly important at high light levels whereas α was more important at low light levels, however Rmax exerted the greatest influence under most conditions.


2020 ◽  
Vol 12 (10) ◽  
pp. 1627
Author(s):  
Kuo-Wei Lan ◽  
Li-Jhih Lian ◽  
Chun-Huei Li ◽  
Po-Yuan Hsiao ◽  
Sha-Yan Cheng

Basin-scale sampling for high frequency oceanic primary production (PP) is available from satellites and must achieve a strong match-up with in situ observations. This study evaluated a regionally high-resolution satellite-derived PP using a vertically generalized production model (VGPM) with in situ PP. The aim was to compare the root mean square difference (RMSD) and relative percent bias (Bias) in different water masses around Taiwan. Determined using light–dark bottle methods, the spatial distribution of VGPM derived from different Chl-a data of MODIS Aqua (PPA), MODIS Terra (PPT), and averaged MODIS Aqua and Terra (PPA&T) exhibited similar seasonal patterns with in situ PP. The three types of satellite-derived PPs were linearly correlated with in situ PPs, the coefficients of which were higher throughout the year in PPA&T (r2 = 0.61) than in PPA (r2 = 0.42) and PPT (r2 = 0.38), respectively. The seasonal RMSR and bias for the satellite-derived PPs were in the range of 0.03 to 0.09 and −0.14 to −0.39, respectively, which suggests the PPA&T produces slightly more accurate PP measurements than PPA and PPT. On the basis of environmental conditions, the subareas were further divided into China Coast water, Taiwan Strait water, Northeastern upwelling water, and Kuroshio water. The VPGM PP in the four subareas displayed similar features to Chl-a variations, with the highest PP in the China Coast water and lowest PP in the Kuroshio water. The RMSD was higher in the Kuroshio water with an almost negative bias. The PPA exhibited significant correlations with in situ PP in the subareas; however, the sampling locations were insufficient to yield significant results in the China Coast water.


2019 ◽  
Vol XVI (2) ◽  
pp. 1-11
Author(s):  
Farrukh Jamal ◽  
Hesham Mohammed Reyad ◽  
Soha Othman Ahmed ◽  
Muhammad Akbar Ali Shah ◽  
Emrah Altun

A new three-parameter continuous model called the exponentiated half-logistic Lomax distribution is introduced in this paper. Basic mathematical properties for the proposed model were investigated which include raw and incomplete moments, skewness, kurtosis, generating functions, Rényi entropy, Lorenz, Bonferroni and Zenga curves, probability weighted moment, stress strength model, order statistics, and record statistics. The model parameters were estimated by using the maximum likelihood criterion and the behaviours of these estimates were examined by conducting a simulation study. The applicability of the new model is illustrated by applying it on a real data set.


2016 ◽  
Author(s):  
Sydney Olund ◽  
◽  
Susan A. Welch ◽  
Kathleen A. Welch ◽  
Elsa Dorothea Saelens ◽  
...  

Author(s):  
N. Penny Holliday ◽  
Stephanie Henson

The growth, distribution, and variability of phytoplankton populations in the North Atlantic are primarily controlled by the physical environment. This chapter provides an overview of the regional circulation of the North Atlantic, and an introduction to the key physical features and processes that affect ecosystems, and especially plankton, via the availability of light and nutrients. There is a natural seasonal cycle in primary production driven by physical processes that determine the light and nutrient levels, but the pattern has strong regional variations. The variations are determined by persistent features on the basin scale (e.g. the main currents and mixed layer regimes of the subtropical and subpolar gyres), as well as transient mesoscale features such as eddies and meanders of fronts.


2017 ◽  
Vol 37 (1) ◽  
pp. 1-12 ◽  
Author(s):  
Haluk Ay ◽  
Anthony Luscher ◽  
Carolyn Sommerich

Purpose The purpose of this study is to design and develop a testing device to simulate interaction between human hand–arm dynamics, right-angle (RA) computer-controlled power torque tools and joint-tightening task-related variables. Design/methodology/approach The testing rig can simulate a variety of tools, tasks and operator conditions. The device includes custom data-acquisition electronics and graphical user interface-based software. The simulation of the human hand–arm dynamics is based on the rig’s four-bar mechanism-based design and mechanical components that provide adjustable stiffness (via pneumatic cylinder) and mass (via plates) and non-adjustable damping. The stiffness and mass values used are based on an experimentally validated hand–arm model that includes a database of model parameters. This database is with respect to gender and working posture, corresponding to experienced tool operators from a prior study. Findings The rig measures tool handle force and displacement responses simultaneously. Peak force and displacement coefficients of determination (R2) between rig estimations and human testing measurements were 0.98 and 0.85, respectively, for the same set of tools, tasks and operator conditions. The rig also provides predicted tool operator acceptability ratings, using a data set from a prior study of discomfort in experienced operators during torque tool use. Research limitations/implications Deviations from linearity may influence handle force and displacement measurements. Stiction (Coulomb friction) in the overall rig, as well as in the air cylinder piston, is neglected. The rig’s mechanical damping is not adjustable, despite the fact that human hand–arm damping varies with respect to gender and working posture. Deviations from these assumptions may affect the correlation of the handle force and displacement measurements with those of human testing for the same tool, task and operator conditions. Practical implications This test rig will allow the rapid assessment of the ergonomic performance of DC torque tools, saving considerable time in lineside applications and reducing the risk of worker injury. DC torque tools are an extremely effective way of increasing production rate and improving torque accuracy. Being a complex dynamic system, however, the performance of DC torque tools varies in each application. Changes in worker mass, damping and stiffness, as well as joint stiffness and tool program, make each application unique. This test rig models all of these factors and allows quick assessment. Social implications The use of this tool test rig will help to identify and understand risk factors that contribute to musculoskeletal disorders (MSDs) associated with the use of torque tools. Tool operators are subjected to large impulsive handle reaction forces, as joint torque builds up while tightening a fastener. Repeated exposure to such forces is associated with muscle soreness, fatigue and physical stress which are also risk factors for upper extremity injuries (MSDs; e.g. tendinosis, myofascial pain). Eccentric exercise exertions are known to cause damage to muscle tissue in untrained individuals and affect subsequent performance. Originality/value The rig provides a novel means for quantitative, repeatable dynamic evaluation of RA powered torque tools and objective selection of tightening programs. Compared to current static tool assessment methods, dynamic testing provides a more realistic tool assessment relative to the tool operator’s experience. This may lead to improvements in tool or controller design and reduction in associated musculoskeletal discomfort in operators.


2020 ◽  
Vol 70 (1) ◽  
pp. 145-161 ◽  
Author(s):  
Marnus Stoltz ◽  
Boris Baeumer ◽  
Remco Bouckaert ◽  
Colin Fox ◽  
Gordon Hiscott ◽  
...  

Abstract We describe a new and computationally efficient Bayesian methodology for inferring species trees and demographics from unlinked binary markers. Likelihood calculations are carried out using diffusion models of allele frequency dynamics combined with novel numerical algorithms. The diffusion approach allows for analysis of data sets containing hundreds or thousands of individuals. The method, which we call Snapper, has been implemented as part of the BEAST2 package. We conducted simulation experiments to assess numerical error, computational requirements, and accuracy recovering known model parameters. A reanalysis of soybean SNP data demonstrates that the models implemented in Snapp and Snapper can be difficult to distinguish in practice, a characteristic which we tested with further simulations. We demonstrate the scale of analysis possible using a SNP data set sampled from 399 fresh water turtles in 41 populations. [Bayesian inference; diffusion models; multi-species coalescent; SNP data; species trees; spectral methods.]


2013 ◽  
Vol 2013 ◽  
pp. 1-13 ◽  
Author(s):  
Helena Mouriño ◽  
Maria Isabel Barão

Missing-data problems are extremely common in practice. To achieve reliable inferential results, we need to take into account this feature of the data. Suppose that the univariate data set under analysis has missing observations. This paper examines the impact of selecting an auxiliary complete data set—whose underlying stochastic process is to some extent interdependent with the former—to improve the efficiency of the estimators for the relevant parameters of the model. The Vector AutoRegressive (VAR) Model has revealed to be an extremely useful tool in capturing the dynamics of bivariate time series. We propose maximum likelihood estimators for the parameters of the VAR(1) Model based on monotone missing data pattern. Estimators’ precision is also derived. Afterwards, we compare the bivariate modelling scheme with its univariate counterpart. More precisely, the univariate data set with missing observations will be modelled by an AutoRegressive Moving Average (ARMA(2,1)) Model. We will also analyse the behaviour of the AutoRegressive Model of order one, AR(1), due to its practical importance. We focus on the mean value of the main stochastic process. By simulation studies, we conclude that the estimator based on the VAR(1) Model is preferable to those derived from the univariate context.


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