A New Multiplex PCR Method for Rapid Detection of Genes Encoding VIM and IMP Types of Metallo Beta Lactamases

2010 ◽  
Vol 30 (4) ◽  
pp. 1312-1316 ◽  
Author(s):  
Ömer KÜÇÜKBASMACI ◽  
Kenan MİDİLLİ ◽  
Ghassan ISSA ◽  
Özlem GÜVEN ◽  
Nevriye GÖNÜLLÜ
2006 ◽  
Vol 56 (1) ◽  
pp. 103-106 ◽  
Author(s):  
Constança Pomba ◽  
Nuno Mendonça ◽  
Marta Costa ◽  
Deolinda Louro ◽  
Bruno Baptista ◽  
...  

2012 ◽  
Vol 6 (05) ◽  
pp. 443-451 ◽  
Author(s):  
Ilargi Martinez-Ballesteros ◽  
Bianca Paglietti ◽  
Aitor Rementeria ◽  
Lorena Laorden ◽  
Maria Garcia-Ricobaraza ◽  
...  

Introduction: We developed and evaluated a multiplex-PCR method for rapid detection of the most common Salmonella serovars in both developed and developing countries. Additionally, the stability of the premixed reagents at high room temperature was studied. Methodology: Fifty-two Salmonella strains belonging to the collections of the University of Sassari, Italy, and to the University of the Basque Country, Spain, and a collection of a hundred blinded strains, were used to evaluate the multiplex-PCR. Primers targeting genes STY1599 and fliC were selected, and the method was evaluated both intra and inter-laboratories. Results: The inter-laboratory reproducibility was 95.92%, with a kappa index of 0.757 that indicates a substantial agreement and a high accuracy (80.81%). The sensitivity, specificity, accuracy and precision indexes for the Salmonella genus and S. Typhi targets were maximum, although the targets for Paratyphi A, Typhimurium and Enteritidis showed less accuracy. During a seven-week period, hot-start multiplex-PCR runs were performed with reagents mixed with wax to test their stability at 30ºC, and no significant variation in the patterns of amplification was observed. Conclusions: An improved multiplex-PCR for rapid detection of the most common serovars of Salmonella operable in both developed and developing countries has been designed and tested intra and inter-laboratories. Following a careful optimization protocol will not only allow the confirmation of any suspicious colony by the amplification of the Salmonella genus target, but also the preliminary adscription to the prevalent serovars. Premixed reagents with wax facilitate the throughput and stability of reagents at high room temperatures.


2006 ◽  
Vol 59 (2) ◽  
pp. 321-322 ◽  
Author(s):  
M. J. Ellington ◽  
J. Kistler ◽  
D. M. Livermore ◽  
N. Woodford

2021 ◽  
Vol 9 (1) ◽  
pp. 63-72
Author(s):  
Barbora Vidová ◽  
Michal Chotár ◽  
Jozef Timko ◽  
Andrej Godány

The majority of Streptococcus agalactiae strains express one or more surface-anchored proteins that vary by strain. These proteins, which are characteristic for S. agalactiae, and are able to induce protective antibodies, include the alpha C, Rib proteins, alpha-like protein 2, and alpha-like protein 3. In this study was developed multiplex PCR method for detection of genes encoding these proteins, and its occurrence within a various S. agalactiae isolates of bovine origin. Also are reported two new genes from bovine isolates of S. agalactiae amplified by PCR, encoding other putative members of the family, alphalike protein 6, and alpha-like protein 7. They contain an overall genetic organization highly similar to that of the alpha C and Rib proteins.


2015 ◽  
Vol 26 (1) ◽  
pp. 67-70 ◽  
Author(s):  
KHMNH Nazir ◽  
J Hassan ◽  
SMZH Chowdhury ◽  
MB Rahman

Bacillus anthracis spores were isolated and detected from soil samples (n=72) using multiplex-PCR method. The bacteria were isolated and primarily identified as Bacillus anthracis using selective Polymyxin B - Lysozyme - EDTA - Thallous acetate agar. A multiplex-PCR method targeting three genes; rpoB of genome, pag of pX01 and cap of pX02 was done to confirm the isolated bacteria. Among 72 soil samples, the viable B. anthracis spores could be extracted from 14 (19.44%) samples. However, both pX01 and pX02 plasmids were harbored in 5 (6.94%) isolates. On the other hand, pX01 and pX02 was present in 8 (57.14%) and 11 (78.57%) isolates, respectively.  This two-step-method was found to be easy, accurate and rapid in identification of B. anthracis spores from soil samples and to identify the toxigenic plasmids present in this bacterium. Progressive Agriculture 26:67-70, 2015


Food Control ◽  
2015 ◽  
Vol 52 ◽  
pp. 78-84 ◽  
Author(s):  
Haiquan Liu ◽  
Liqun Lu ◽  
Yingjie Pan ◽  
Xiaohong Sun ◽  
Cheng-An Hwang ◽  
...  

2009 ◽  
Vol 58 (11) ◽  
pp. 1522-1524 ◽  
Author(s):  
Anna Karina Mostachio ◽  
Inneke van der Heidjen ◽  
Flavia Rossi ◽  
Anna Sara Levin ◽  
Silvia F. Costa

2012 ◽  
Vol 32 (5) ◽  
pp. 359-361 ◽  
Author(s):  
Sang Sook Hong ◽  
Kyeongmi Kim ◽  
Ji Young Huh ◽  
Bochan Jung ◽  
Myung Seo Kang ◽  
...  

2014 ◽  
Vol 4 (5) ◽  
pp. 404-409 ◽  
Author(s):  
Dehghan fatemeh ◽  
Zolfaghari Mohammad Reza ◽  
Arjomandzadegan Mohammad ◽  
Kalantari Salomeh ◽  
Ahmari Gholam Reza ◽  
...  

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