scholarly journals Analysis of Genome Sequences of Coagulase-Negative Staphylococci Isolates from South Africa and Nigeria Highlighted Environmentally Driven Heterogeneity

2021 ◽  
Vol 9 ◽  
pp. 26-37
Author(s):  
Tawanda Elias Maguvu ◽  
Adegboyega Oyedele Oladipo ◽  
Cornelius Carlos Bezuidenhout
2019 ◽  
Vol 8 (32) ◽  
Author(s):  
Johannes Cornelius Jacobus Fourie ◽  
Tomasz J. Sanko ◽  
Cornelius Carlos Bezuidenhout ◽  
Charlotte Mienie ◽  
Rasheed Adegbola Adeleke

Surface water systems in South Africa are experiencing a major decline in quality due to various anthropogenic factors. This poses a possible health risk for humans. Here, we present the draft genome sequences of three Clostridium perfringens isolates obtained from a fecally polluted river system in the North West province of South Africa.


2020 ◽  
Vol 9 (32) ◽  
Author(s):  
S. Ndlovu ◽  
A.-L. Williamson ◽  
L. Heath ◽  
O. Carulei

ABSTRACT We report here the genome sequences of three African swine fever virus isolates obtained from a domestic pig (Zaire [Zaire]), a warthog (RSA/W1/1999 [South Africa]), and a European wild boar (RSA/2/2004 [South Africa]) belonging to genotypes IV, XX, and XX, respectively. This report increases the number of genotype XX, wild boar, and warthog reference sequences available.


2019 ◽  
Vol 20 (5) ◽  
pp. 1215 ◽  
Author(s):  
Xavier Argemi ◽  
Yves Hansmann ◽  
Kevin Prola ◽  
Gilles Prévost

Coagulase-negative Staphylococci (CoNS) are skin commensal bacteria. Besides their role in maintaining homeostasis, CoNS have emerged as major pathogens in nosocomial settings. Several studies have investigated the molecular basis for this emergence and identified multiple putative virulence factors with regards to Staphylococcus aureus pathogenicity. In the last decade, numerous CoNS whole-genome sequences have been released, leading to the identification of numerous putative virulence factors. Koch’s postulates and the molecular rendition of these postulates, established by Stanley Falkow in 1988, do not explain the microbial pathogenicity of CoNS. However, whole-genome sequence data has shed new light on CoNS pathogenicity. In this review, we analyzed the contribution of genomics in defining CoNS virulence, focusing on the most frequent and pathogenic CoNS species: S. epidermidis, S. haemolyticus, S. saprophyticus, S. capitis, and S. lugdunensis.


2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Kgaugelo E. Lekota ◽  
Joseph Mafofo ◽  
Evelyn Madoroba ◽  
Jasper Rees ◽  
Henriette van Heerden ◽  
...  

Bacillus anthracis is a Gram-positive bacterium that causes anthrax, mainly in herbivores through exotoxins and capsule produced on plasmids, pXO1 and pXO2. This paper compares the whole-genome sequences of two B. anthracis strains from an endemic region and a sporadic outbreak in South Africa. Sequencing was done using next-generation sequencing technologies.


2020 ◽  
Vol 9 (10) ◽  
Author(s):  
S. Ndlovu ◽  
A.-L. Williamson ◽  
R. Malesa ◽  
J. van Heerden ◽  
C. I. Boshoff ◽  
...  

Here, we report the draft genome sequences of three African swine fever viruses isolated from Ornithodoros soft ticks. Isolates LIV 5/40 (Zambia), SPEC 57 (South Africa), and RSA/2/2008 (South Africa) belong to genotypes I, III, and XXII, respectively.


2018 ◽  
Vol 6 (20) ◽  
Author(s):  
Anne Caroline Mascarenhas dos Santos ◽  
Ruili Jie ◽  
Helena Antunes Godoy ◽  
Manuela Alves ◽  
Jean-François Pombert

ABSTRACT Coagulase-negative staphylococci (CoNS) are opportunistic pathogens frequently encountered in nosocomial infections. Animal-associated CoNS pose a zoonotic risk and constitute a potential reservoir for virulence and antimicrobial resistance genes. To improve our knowledge of animal-associated CoNS, we sequenced the complete genomes of Staphylococcus felis (ATCC 49168) and Staphylococcus kloosii (ATCC 43959).


2018 ◽  
Vol 6 (25) ◽  
Author(s):  
Mushal Allam ◽  
Nomsa Tau ◽  
Shannon L. Smouse ◽  
Phillip S. Mtshali ◽  
Florah Mnyameni ◽  
...  

ABSTRACT We report whole-genome sequences for 10 Listeria monocytogenes sequence type 6 isolates associated with a large listeriosis outbreak in South Africa, which occurred over the period of 2017 to 2018. The possibility of listeriosis spreading beyond South Africa’s borders as a result of exported contaminated food products prompted us to make the genome sequences publicly available.


BMC Genomics ◽  
2014 ◽  
Vol 15 (1) ◽  
pp. 463 ◽  
Author(s):  
Kristy Offerman ◽  
Olivia Carulei ◽  
Anelda van der Walt ◽  
Nicola Douglass ◽  
Anna-Lise Williamson

2017 ◽  
Vol 5 (27) ◽  
Author(s):  
Angelika K. Loots ◽  
Morné Du Plessis ◽  
Desiré Lee Dalton ◽  
Emily Mitchell ◽  
Estelle H. Venter

ABSTRACT Canine distemper virus causes global multihost infectious disease. This report details complete genome sequences of three vaccine and two new wild-type strains. The wild-type strains belong to the South African lineage, and all three vaccine strains to the America 1 lineage. This constitutes the first genomic sequences of this virus from South Africa.


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