scholarly journals The CombineArchiveWeb application – A web based tool to handle files associated with modelling results

2014 ◽  
Author(s):  
Martin Scharm ◽  
Florian Wendland ◽  
Martin Peters ◽  
Markus Wolfien ◽  
Tom Theile ◽  
...  
Keyword(s):  
Computational Biology ◽  
In Silico ◽  
Simulation Studies ◽  
Meta Data ◽  
Web Based ◽  
Manual Handling ◽  
The Web

Sharing in silico experiments is essential for the advance of research in computational biology. Consequently, the COMBINE archive was designed as a digital container format. It eases the management of files related to a modelling result, fosters collaboration, and ultimately enables the exchange of reproducible simulation studies. However, manual handling of COMBINE archives is tedious and error prone. We therefore developed the CombineArchiveWeb application to support scientists in promoting and publishing their research by means of creating, exploring, modifying, and sharing archives. All files are equipped with meta data and can be distributed over the Web through shareable workspaces.

scholarly journals The CombineArchiveWeb application – A web based tool to handle files associated with modelling results

2014 ◽  
Author(s):  
Martin Scharm ◽  
Florian Wendland ◽  
Martin Peters ◽  
Markus Wolfien ◽  
Tom Theile ◽  
...  
Keyword(s):  
Computational Biology ◽  
In Silico ◽  
Simulation Studies ◽  
Meta Data ◽  
Web Based ◽  
Manual Handling ◽  
The Web

Sharing in silico experiments is essential for the advance of research in computational biology. Consequently, the COMBINE archive was designed as a digital container format. It eases the management of files related to a modelling result, fosters collaboration, and ultimately enables the exchange of reproducible simulation studies. However, manual handling of COMBINE archives is tedious and error prone. We therefore developed the CombineArchiveWeb application to support scientists in promoting and publishing their research by means of creating, exploring, modifying, and sharing archives. All files are equipped with meta data and can be distributed over the Web through shareable workspaces.

scholarly journals A Free Web-Based Protocol to Assist Structure-Based Virtual Screening Experiments

2019 ◽  
Vol 20 (18) ◽  
pp. 4648 ◽  
Author(s):  
Nathalie Lagarde ◽  
Elodie Goldwaser ◽  
Tania Pencheva ◽  
Dessislava Jereva ◽  
Ilza Pajeva ◽  
...  
Keyword(s):  
Drug Discovery ◽  
Virtual Screening ◽  
Web Service ◽  
Molecular Mechanics ◽  
In Silico ◽  
Chemical Biology ◽  
In Silico Screening ◽  
Web Based ◽  
Screening Experiments ◽  
The Web

Chemical biology and drug discovery are complex and costly processes. In silico screening approaches play a key role in the identification and optimization of original bioactive molecules and increase the performance of modern chemical biology and drug discovery endeavors. Here, we describe a free web-based protocol dedicated to small-molecule virtual screening that includes three major steps: ADME-Tox filtering (via the web service FAF-Drugs4), docking-based virtual screening (via the web service MTiOpenScreen), and molecular mechanics optimization (via the web service AMMOS2 [Automatic Molecular Mechanics Optimization for in silico Screening]). The online tools FAF-Drugs4, MTiOpenScreen, and AMMOS2 are implemented in the freely accessible RPBS (Ressource Parisienne en Bioinformatique Structurale) platform. The proposed protocol allows users to screen thousands of small molecules and to download the top 1500 docked molecules that can be further processed online. Users can then decide to purchase a small list of compounds for in vitro validation. To demonstrate the potential of this online-based protocol, we performed virtual screening experiments of 4574 approved drugs against three cancer targets. The results were analyzed in the light of published drugs that have already been repositioned on these targets. We show that our protocol is able to identify active drugs within the top-ranked compounds. The web-based protocol is user-friendly and can successfully guide the identification of new promising molecules for chemical biology and drug discovery purposes.

scholarly journals The CombineArchive Toolkit - facilitating the transfer of research results

2014 ◽  
Author(s):  
Martin Scharm ◽  
Florian Wendland ◽  
Martin Peters ◽  
Markus Wolfien ◽  
Tom Theile ◽  
...  
Keyword(s):  
Computational Biology ◽  
In Silico ◽  
Reproducible Research ◽  
Research Results ◽  
Manual Handling

Sharing in silico experiments is essential for the advance of research in computational biology. Consequently, the COMBINE archive was designed as a digital container format. It eases the management of numerous files, fosters collaboration, and ultimately enables the exchange of reproducible research results. However, manual handling of COMBINE archives is tedious and error prone. We therefore developed the CombineArchive Toolkit. It supports scientists in promoting and publishing their work by means of creating, exploring, modifying, and sharing archives.

scholarly journals The CombineArchive Toolkit - facilitating the transfer of research results

2014 ◽  
Author(s):  
Martin Scharm ◽  
Florian Wendland ◽  
Martin Peters ◽  
Markus Wolfien ◽  
Tom Theile ◽  
...  
Keyword(s):  
Computational Biology ◽  
In Silico ◽  
Reproducible Research ◽  
Research Results ◽  
Manual Handling

Sharing in silico experiments is essential for the advance of research in computational biology. Consequently, the COMBINE archive was designed as a digital container format. It eases the management of numerous files, fosters collaboration, and ultimately enables the exchange of reproducible research results. However, manual handling of COMBINE archives is tedious and error prone. We therefore developed the CombineArchive Toolkit. It supports scientists in promoting and publishing their work by means of creating, exploring, modifying, and sharing archives.

Support on the Internet – Results of the web-based programme EfA for family members of disordered gamblers

2017 ◽  
Author(s):  
UG Buchner ◽  
A Koytek ◽  
N Wodarz ◽  
J Wolstein
Keyword(s):  
Family Members ◽  
The Internet ◽  
Web Based ◽  
The Web

PENERAPAN METODE PROTOTYPING PADA PERANCANGAN APLIKASI SPPD KPPN MEDAN II BERBASIS WEBSITE

2019 ◽  
Vol 11 (1) ◽  
pp. 8-19
Author(s):  
Crystal Jelita Lumban Tobing
Keyword(s):  
Time Saving ◽  
Web Based ◽  
Government Organization ◽  
Manual Method ◽  
Microsoft Word ◽  
Ministry Of Finance ◽  
The Government ◽  
The City ◽  
Employee Data ◽  
The Web

 KPPN Medan II is one of the government organization units at the Ministry of Finance. Where leaders and employees who work at KPPN Medan II always carry out official trips between cities and outside the city. With these conditions, making SPPD documents experiencing the intensity of official travel activities carried out by employees of KPPN Medan II can be said frequently. So that in making SPPD in KPPN Medan II is still using the manual method that is recording through Microsoft Word which in the sense is less effective and efficient. In naming employees who get official assignments, officers manually entering employee data that receives official travel letters are prone to being lost because data is manually written. The web-based SPPD application is built by applying this prototyping method which is expected to facilitate SPPD KPPN Medan II management officers in making SPPD that is effective, efficient, accurate, time-saving, and not prone to losing SPPD data of KPPN Medan II employees who will has made official trips due to the existence of a special database to accommodate all SPPD files.

Rancang Bangun Sistem Penerimaan Dan Mutasi Barang Pada PDAM Tirta Kerta Raharja

Sensi Journal ◽  
2020 ◽  
Vol 6 (2) ◽  
pp. 236-246
Author(s):  
Ilamsyah Ilamsyah ◽  
Yulianto Yulianto ◽  
Tri Vita Febriani
Keyword(s):  
System Analysis ◽  
Object Oriented ◽  
Analysis Method ◽  
Web Based ◽  
Visual Modeling ◽  
Long Time ◽  
The Right ◽  
And Control ◽  
Web Based System ◽  
The Web

The right and appropriate system of receiving and transferring goods is needed by the company. In the process of receiving and transferring goods from the central warehouse to the branch warehouse at PDAM Tirta Kerta Raharja, Tangerang Regency, which is currently done manually is still ineffective and inaccurate because the Head of Subdivision uses receipt documents, namely PPBP and mutation of goods, namely MPPW in the form of paper as a submission media. The Head of Subdivision enters the data of receipt and mutation of goods manually and requires a relatively long time because at the time of demand for the transfer of goods the Head of Subdivision must check the inventory of goods in the central warehouse first. Therefore, it is necessary to hold a design of information systems for the receipt and transfer of goods from the central warehouse to a web-based branch warehouse that is already database so that it is more effective, efficient and accurate. With the web-based system of receiving and transferring goods that are already datatabed, it can facilitate the Head of Subdivision in inputing data on the receipt and transfer of goods and control of stock inventory so that the Sub Head of Subdivision can do it periodically to make it more effective, efficient and accurate. The method of data collection is done by observing, interviewing and studying literature from various previous studies, while the system analysis method uses the Waterfall method which aims to solve a problem and uses design methods with visual modeling that is object oriented with UML while programming using PHP and MySQL as a database.

Desain Dan Implementasi Web Smp Islam Ngebruk Menggunakan Php Dan Mysql

2017 ◽  
Vol 16 (2) ◽  
pp. 1
Author(s):  
Muchammad Ismail Hamzah
Keyword(s):  
High School ◽  
Programming Language ◽  
Junior High School ◽  
Information Delivery ◽  
The Internet ◽  
Web Based ◽  
Technological Advances ◽  
Bulletin Boards ◽  
Printing Machine ◽  
The Web

In accordance with the technological advances of web-based information delivery via the internet has more value, because the information can be delivered easily, quickly,  spacious and interactive. Because this way, information is simply inserted into the web and within seconds the information can be accessed globally.  Submission of this information has not been used in Ngebruk Islamic Junior High School, Sumberpucung District, Malang Regency. Submission of the information in these schools still use manual way, such as by mail, bulletin boards, or orally. Surely this way less effective and efficient, since it requires a lot of expenses such as the purchase of paper, printing machine and maintenance, ink, and its scope was limited to the scope of the school.To reduce the above problems, the delivery of information in this school need to use web media created with the PHP programming language and MySQL. PHP is a programming language that is used to allow users to process information on the web, while MySQL is the software used to store the information on the web. Once the web is run online, the school entered information to the web, can be accessed via intenet by anyone without the limited space and time

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