scholarly journals Using electroretinograms and multi-model inference to identify spectral classes of photoreceptors and relative opsin expression levels

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3595 ◽  
Author(s):  
Nicolas Lessios

Understanding how individual photoreceptor cells factor in the spectral sensitivity of a visual system is essential to explain how they contribute to the visual ecology of the animal in question. Existing methods that model the absorption of visual pigments use templates which correspond closely to data from thin cross-sections of photoreceptor cells. However, few modeling approaches use a single framework to incorporate physical parameters of real photoreceptors, which can be fused, and can form vertical tiers. Akaike’s information criterion (AICc) was used here to select absorptance models of multiple classes of photoreceptor cells that maximize information, given visual system spectral sensitivity data obtained using extracellular electroretinograms and structural parameters obtained by histological methods. This framework was first used to select among alternative hypotheses of photoreceptor number. It identified spectral classes from a range of dark-adapted visual systems which have between one and four spectral photoreceptor classes. These were the velvet worm,Principapillatus hitoyensis, the branchiopod water flea,Daphnia magna, normal humans, and humans with enhanced S-cone syndrome, a condition in which S-cone frequency is increased due to mutations in a transcription factor that controls photoreceptor expression. Data from the Asian swallowtail,Papilio xuthus, which has at least five main spectral photoreceptor classes in its compound eyes, were included to illustrate potential effects of model over-simplification on multi-model inference. The multi-model framework was then used with parameters of spectral photoreceptor classes and the structural photoreceptor array kept constant. The goal was to map relative opsin expression to visual pigment concentration. It identified relative opsin expression differences for two populations of the bluefin killifish,Lucania goodei. The modeling approach presented here will be useful in selecting the most likely alternative hypotheses of opsin-based spectral photoreceptor classes, using relative opsin expression and extracellular electroretinography.


2005 ◽  
Vol 2 (2) ◽  
pp. 136-140 ◽  
Author(s):  
Eric S. Greene ◽  
Maria G. Medeiros ◽  
Wilson K. S. Chiu

A one-dimensional model of chemical and mass transport phenomena in the porous anode of a solid-oxide fuel cell, in which there is internal reforming of methane, is presented. Macroscopically averaged porous electrode theory is used to model the mass transfer that occurs in the anode. Linear kinetics at a constant temperature are used to model the reforming and shift reactions. Correlations based on the Damkohler number are created to relate anode structural parameters and thickness to a nondimensional electrochemical conversion rate and cell voltage. It is shown how these can be applied in order to assist the design of an anode.



2018 ◽  
Vol 4 (3) ◽  
pp. 518
Author(s):  
Tao Cheng ◽  
Yi Zhang ◽  
Keqin Yan

The character of geomaterials is affected by stress path remarkably. Under different stress paths, the stress-strain characteristics of geomaterials are difference. For the unloading path in existing engineering situation, the physical parameters and constitutive model is usually determined by loading test. The path to uninstall the actual project conditions which may be a larger error. Therefore, this work proceeding from the actual project, deep excavation of the lateral unloading condition is analysed. The tests of CTC path and RTC path on silty clay in Huangshi city of china by multi-path tri-axial plane strain are carried on in the geotechnical Engineering Laboratory of Huangshi Institute of Technology. Then, the phenomenon under the two stress paths are compared with each other and describing the differences between them. The mechanical properties in the RTC stress path is analyzed mainly. Based on the Cam-Clay model framework, then derived this material yield equation based on Cam-clay model, Laiding the foundation for the numerical analysis.



2015 ◽  
Vol 218 (10) ◽  
pp. 1556-1563 ◽  
Author(s):  
M. S. Yewers ◽  
C. A. McLean ◽  
A. Moussalli ◽  
D. Stuart-Fox ◽  
A. T. D. Bennett ◽  
...  


2010 ◽  
Vol 176 (1) ◽  
pp. 1-13 ◽  
Author(s):  
Rebecca C. Fuller ◽  
Leslie A. Noa ◽  
Reid S. Strellner


2019 ◽  
Vol 9 (22) ◽  
pp. 4959 ◽  
Author(s):  
Hesheng Tang ◽  
Xueyuan Guo ◽  
Liyu Xie ◽  
Songtao Xue

The uncertainty in parameter estimation arises from structural systems’ input and output measured errors and from structural model errors. An experimental verification of the shuffled complex evolution metropolis algorithm (SCEM-UA) for identifying the optimal parameters of structural systems and estimating their uncertainty is presented. First, the estimation framework is theoretically developed. The SCEM-UA algorithm is employed to search through feasible parameters’ space and to infer the posterior distribution of the parameters automatically. The resulting posterior parameter distribution then provides the most likely estimation of parameter sets that produces the best model performance. The algorithm is subsequently validated through both numerical simulation and shaking table experiment for estimating the parameters of structural systems considering the uncertainty of available information. Finally, the proposed algorithm is extended to identify the uncertain physical parameters of a nonlinear structural system with a particle mass tuned damper (PTMD). The results demonstrate that the proposed algorithm can effectively estimate parameters with uncertainty for nonlinear structural systems, and it has a stronger anti-noise capability. Notably, the SCEM-UA method not only shows better global optimization capability compared with other heuristic optimization methods, but it also has the ability to simultaneously estimate the uncertainties associated with the posterior distributions of the structural parameters within a single optimization run.



2014 ◽  
Vol 31 (9) ◽  
pp. 2297-2308 ◽  
Author(s):  
Jane E. Schulte ◽  
Conor S. O’Brien ◽  
Matthew A. Conte ◽  
Kelly E. O’Quin ◽  
Karen L. Carleton


Fractals ◽  
1997 ◽  
Vol 05 (02) ◽  
pp. 275-280 ◽  
Author(s):  
Cs. Beleznai ◽  
R. Vajtai ◽  
L. Nánai

Poly (tetrafluorethylene) and polyimide samples were irradiated by a pulsed laser source at 308 nm and the resulting surface morphology was investigated. The photoablated surfaces show a strong dependence on the optical and structural parameters of the polymers. The roughness of the fractal surfaces has been characterized by means of calculating their fractal dimensions and the results are interpreted as a function of the polymer physical parameters.





2019 ◽  
Author(s):  
Kiara C. Eldred ◽  
Cameron Avelis ◽  
Robert J. Johnston ◽  
Elijah Roberts

AbstractNervous systems are incredibly diverse, with myriad neuronal subtypes defined by gene expression. How binary and graded fate characteristics are patterned across tissues is poorly understood. Expression of opsin photopigments in the cone photoreceptors of the mouse retina provides an excellent model to address this question. Individual cones express S-opsin only, M-opsin, or both S-opsin and M-opsin. These cell populations are patterned along the dorsal-ventral axis, with greater M-opsin expression in the dorsal region and greater S-opsin expression in the ventral region. Thyroid hormone signaling plays a critical role in activating M-opsin and repressing S-opsin. Here, we developed an image analysis approach to identify individual cone cells and evaluate their opsin expression from immunofluorescence imaging tiles spanning roughly 6 mm along the D-V axis of the mouse retina. From analyzing the opsin expression of ∼250,000 cells, we found that cones make a binary decision between S-opsin only and co-expression competent fates. Co-expression competent cells express graded levels of S- and M-opsins, depending nonlinearly on their position in the dorsal-ventral axis. M- and S-opsin expression display differential, inverse patterns. Using these single-cell data we developed a quantitative, stochastic model of cone cell decisions in the retinal tissue based on thyroid hormone signaling activity. The model recovers the probability distribution for cone fate patterning in the mouse retina and describes a minimal set of interactions that are necessary to reproduce the observed cell fates. Our study provides a paradigm describing how differential responses to regulatory inputs generate complex patterns of binary and graded cell fates.Author SummaryThe development of a cell in a mammalian tissue is governed by a complex regulatory network that responds to many input signals to give the cell a distinct identity, a process referred to as cell-fate specification. Some of these cell fates have binary on-or-off gene expression patterns, while others have graded gene expression that changes across the tissue. Differentiation of the photoreceptor cells that sense light in the mouse retina provides a good example of this process. Here, we explore how complex patterns of cell fates are specified in the mouse retina by building a computational model based on analysis of a large number of photoreceptor cells from microscopy images of whole retinas. We use the data and the model to study what exactly it means for a cell to have a binary or graded cell fate and how these cell fates can be distinguished from each other. Our study shows how tens-of-thousands of individual photoreceptor cells can be patterned across a complex tissue by a regulatory network, creating a different outcome depending upon the received inputs.



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