scholarly journals Expression analysis of four pseudo-response regulator (PRR) genes in Chrysanthemum morifolium under different photoperiods

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6420 ◽  
Author(s):  
Shengji Wang ◽  
Chunlai Zhang ◽  
Jing Zhao ◽  
Renhua Li ◽  
Jinhui Lv
Keyword(s):  
Flowering Time ◽  
Developmental Process ◽  
Response Regulator ◽  
Expression Patterns ◽  
Chrysanthemum Morifolium ◽  
Circadian Oscillation ◽  
Sequence Motifs ◽  
Flower Bud ◽  
Short Day ◽  
Pseudo Response Regulator

Genes encoding pseudo-response regulator (PRR) proteins play significant roles in plant circadian clocks. In this study, four genes related to flowering time were isolated from Chrysanthemum morifolium. Phylogenetic analysis showed that they are highly homologous to the counterparts of PRRs of Helianthus annuus and named as CmPRR2, CmPRR7, CmPRR37, and CmPRR73. Conserved motifs prediction indicated that most of the closely related members in the phylogenetic tree share common protein sequence motifs, suggesting functional similarities among the PRR proteins within the same subtree. In order to explore functions of the genes, we selected two Chrysanthemum varieties for comparison; that is, a short-day sensitive Zijiao and a short-day insensitive Aoyunbaixue. Compared to Aoyunbaixue, Zijiao needs 13 more days to complete the flower bud differentiation. Evidence from spatio-temporal gene expression patterns demonstrated that the CmPRRs are highly expressed in flower and stem tissues, with a growing trend across the Chrysanthemum developmental process. In addition, we also characterized the CmPRRs expression patterns and found that CmPRRs can maintain their circadian oscillation features to some extent under different photoperiod treatment conditions. These lines of evidence indicated that the four CmPRRs undergo circadian oscillation and possibly play roles in regulating the flowering time of C. morifolium.

Flowering time control in rice by introducing Arabidopsis clock-associated PSEUDO-RESPONSE REGULATOR 5

2020 ◽  
Vol 84 (5) ◽  
pp. 970-979 ◽  
Author(s):  
Norihito Nakamichi ◽  
Toru Kudo ◽  
Nobue Makita ◽  
Takatoshi Kiba ◽  
Toshinori Kinoshita ◽  
...  
Keyword(s):  
Flowering Time ◽  
Response Regulator ◽  
Time Control ◽  
Pseudo Response Regulator ◽  
Flowering Time Control

scholarly journals Characterization of Mungbean CONSTANS-LIKE Genes and Functional Analysis of CONSTANS-LIKE 2 in the Regulation of Flowering Time in Arabidopsis

2021 ◽  
Vol 12 ◽  
Author(s):  
Chenyang Liu ◽  
Qianqian Zhang ◽  
Hong Zhu ◽  
Chunmei Cai ◽  
Shuai Li
Keyword(s):  
Flowering Time ◽  
Expression Patterns ◽  
Plant Growth And Development ◽  
Promoter Regions ◽  
Short Day ◽  
Long Day ◽  
Close Phylogenetic Relationship ◽  
Gene Functions ◽  
Gene Structures

CONSTANS-LIKE (COL) genes play important roles in the regulation of plant growth and development, and they have been analyzed in many plant species. However, few studies have examined COL genes in mungbean (Vigna radiata). In this study, we identified and characterized 31 mungbean genes whose proteins contained B-Box domains. Fourteen were designated as VrCOL genes and were distributed on 7 of the 11 mungbean chromosomes. Based on their phylogenetic relationships, VrCOLs were clustered into three groups (I, II, and III), which contained 4, 6, and 4 members, respectively. The gene structures and conserved motifs of the VrCOL genes were analyzed, and two duplicated gene pairs, VrCOL1/VrCOL2 and VrCOL8/VrCOL9, were identified. A total of 82 cis-acting elements were found in the VrCOL promoter regions, and the numbers and types of cis-acting elements in each VrCOL promoter region differed. As a result, the expression patterns of VrCOLs varied in different tissues and throughout the day under long-day and short-day conditions. Among these VrCOL genes, VrCOL2 showed a close phylogenetic relationship with Arabidopsis thaliana CO and displayed daily oscillations in expression under short-day conditions but not long-day conditions. In addition, overexpression of VrCOL2 accelerated flowering in Arabidopsis under short-day conditions by affecting the expression of the flowering time genes AtFT and AtTSF. Our study lays the foundation for further investigation of VrCOL gene functions.

scholarly journals Roles of Arabidopsis PSEUDO-RESPONSE REGULATOR (PRR) genes in the opposite controls of flowering time and organ elongation under long-day and continuous light conditions

2008 ◽  
Vol 25 (2) ◽  
pp. 165-172 ◽  
Author(s):  
Kanae Niinuma ◽  
Norihito Nakamichi ◽  
Kana Miyata ◽  
Takeshi Mizuno ◽  
Hiroshi Kamada ◽  
...  
Keyword(s):  
Flowering Time ◽  
Response Regulator ◽  
Continuous Light ◽  
Light Conditions ◽  
Long Day ◽  
Pseudo Response Regulator

scholarly journals Transcriptome Analysis to Identify Putative Genes Involved in Flowering Time Under Different Photoperiods in ‘Hong jin gou’ Common Bean

2019 ◽  
Vol 144 (4) ◽  
pp. 274-279
Author(s):  
Xiaoxu Yang ◽  
Chang Liu ◽  
Zhishan Yan ◽  
Youjun Fan ◽  
Guojun Feng ◽  
...  
Keyword(s):  
Common Bean ◽  
Flowering Time ◽  
Response Regulator ◽  
Differentially Expressed ◽  
Day Length ◽  
Rna Seq ◽  
Yield And Quality ◽  
Highly Sensitive ◽  
Pseudo Response Regulator

Flowering time influences pod yield and quality of common bean (Phaseolus vulgaris); however, our knowledge of flowering time genes and flowering mechanisms in common bean remain limited. We performed RNA-sequencing (RNA-seq) analyses [long-day (LD) condition and short-day (SD) condition] to identify the flowering time genes and analyzed differentially expressed genes to examine their expression levels in relation to flowering time in ‘Hong Jin Gou’ common bean, a cultivar highly sensitive to photoperiod. The circadian patterns of related genes were identified using quantitative real-time polymerase chain reaction (qRT-PCR). Flowering time in ‘Hong Jin Gou’ was influenced by day length: SD conditions promoted flowering. A total of eight flowering time–related genes were identified, which were classified into photoperiod pathways. Homologs of pseudo-response regulator 5, pseudo-response regulator 7, and gigantea were more highly expressed under SD conditions than under LD conditions. Homologs of late elongated hypocotyl and timing of cab expression 1 were differentially expressed under light and dark conditions. Early flowering 3 is a key regulator of the pathway, which coordinates light and circadian clock inputs in leaves to trigger the expression of downstream genes. The present study provides critical information that could facilitate further investigations on the genetic mechanism of flowering time in common bean.

scholarly journals Morphological, Physiological, and Molecular Responses of Sweetly Fragrant Luculia gratissima During the Floral Transition Stage Induced by Short-Day Photoperiod

2021 ◽  
Vol 12 ◽  
Author(s):  
Xiongfang Liu ◽  
Youming Wan ◽  
Jing An ◽  
Xiujiao Zhang ◽  
Yurong Cao ◽  
...  
Keyword(s):  
Developmental Stages ◽  
Response Regulator ◽  
Genetic Regulation ◽  
Floral Transition ◽  
Flowering Plant ◽  
Flower Bud ◽  
Woody Perennial ◽  
Short Day ◽  
Long Day ◽  
F Box Protein

Photoperiod-regulated floral transition is vital to the flowering plant. Luculia gratissima “Xiangfei” is a flowering ornamental plant with high development potential economically and is a short-day woody perennial. However, the genetic regulation of short-day-induced floral transition in L. gratissima is unclear. To systematically research the responses of L. gratissima during this process, dynamic changes in morphology, physiology, and transcript levels were observed and identified in different developmental stages of long-day- and short-day-treated L. gratissima plants. We found that floral transition in L. gratissima occurred 10 d after short-day induction, but flower bud differentiation did not occur at any stage under long-day conditions. A total of 1,226 differentially expressed genes were identified, of which 146 genes were associated with flowering pathways of sugar, phytohormones, photoperiod, ambient temperature, and aging signals, as well as floral integrator and meristem identity genes. The trehalose-6-phosphate signal positively modulated floral transition by interacting with SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 (SPL4) in the aging pathway. Endogenous gibberellin, abscisic acid, cytokinin, and jasmonic acid promoted floral transition, whereas strigolactone inhibited it. In the photoperiod pathway, FD, CONSTANS-LIKE 12, and nuclear factors Y positively controlled floral transition, whereas PSEUDO-RESPONSE REGULATOR 7, FLAVIN-BINDING KELCH REPEAT F-BOX PROTEIN 1, and LUX negatively regulated it. SPL4 and pEARLI1 positively affected floral transition. Suppressor of Overexpression of Constans 1 and AGAMOUSLIKE24 integrated multiple flowering signals to modulate the expression of FRUITFULL/AGL8, AP1, LEAFY, SEPALLATAs, SHORT VEGETATIVE PHASE, and TERMINAL FLOWER 1, thereby regulating floral transition. Finally, we propose a regulatory network model for short-day-induced floral transition in L. gratissima. This study improves our understanding of flowering time regulation in L. gratissima and provides knowledge for its production and commercialization.

scholarly journals Kadife (Tagetes erecta) Bitkisinde Gün Uzunluğunun Büyüme ve Çiçeklenme Üzerine Etkisi

2017 ◽  
Vol 5 (10) ◽  
pp. 1189 ◽  
Author(s):  
Nezihe Köksal ◽  
Sara Yasemin ◽  
Aslıhan Özkaya
Keyword(s):  
Flowering Time ◽  
Early Flowering ◽  
Day Length ◽  
Flowering Plant ◽  
Plant Canopy ◽  
Flower Bud ◽  
Bud Formation ◽  
Short Day ◽  
Long Day ◽  
Flower Bud Formation

Photoperiod is one of the environmental signals that controls of the flowering time on bedding plants. Marigold is a bedding plant which includes obligate or facultative short day and day neutral cultivars. Flowering time of these plants, even day neutral cultivars, delay in extreme hot and long day condition in summer. In this study, the effects of photoperiodic conditions (short day and long day) on flowering and growth of two different day neutral marigold cultivars (Discovery Orange and Discovery Yellow) were investigated. Natural day length (14 hours) was considered as long day condition. Short day condition (8 hours) was conducted artificially by darkening treatment. Therefore, duration to first flower bud formation, duration to first flowering, plant canopy height, plant canopy width, lateral branch number, flower number, main peduncle length, main peduncle thickness, root collar thickness, stem thickness, dry weights of plants (root, shoot, total plant) were evaluated. At the end of the experiment, it was determined that short day conditions reduce duration to first flower bud formation and duration to first flowering. The artificial short day conditions resulted as 13 days early flowering in 'Discovery Orange' and 5 days early flowering in 'Discovery Yellow' cultivar.

scholarly journals Functional characterization of mungbean CONSTANS-LIKE genes reveals a key role for CONSTANS-LIKE 2 in the control of flowering time in A. thaliana under short-day conditions

2020 ◽  
Author(s):  
Chenyang Liu ◽  
Qianqian Zhang ◽  
Hong Zhu ◽  
Chunmei Cai ◽  
Shuai Li
Keyword(s):  
Plant Growth ◽  
Flowering Time ◽  
Growth And Development ◽  
Expression Patterns ◽  
Functional Characterization ◽  
Plant Growth And Development ◽  
Promoter Regions ◽  
Short Day ◽  
Long Day ◽  
Close Phylogenetic Relationship

Abstract Background: CONSTANS-LIKE (COL) genes play important roles in the regulation of plant growth and development, and they have been analyzed in many plant species. However, few investigations have examined COL genes in mungbean (Vigna radiata).Results: In this study, we identified and characterized a total 14 of VrCOL genes from mungbean, which distributed on 7 of the 11 mungbean chromosomes. Based on their conserved domains, VrCOLs were clustered into three groups (I, II and III), which contained 4, 5 and 5 members, respectively. The gene structures and conserved motifs of the VrCOL genes were analyzed, and two duplicated gene pairs, VrCOL1/VrCOL2 and VrCOL8/VrCOL9, were identified. A total of 82 cis-acting elements were found in the VrCOL promoter regions, and the numbers and types of cis-acting elements in each VrCOL promoter region differed. As a result, the expression patterns of VrCOLs varied in different tissues, and under long day and short day conations throughout the day. Among these VrCOL genes, VrCOL2 showed a close phylogenetic relationship with Arabidopsis thaliana (A. thaliana) CO and displayed daily oscillations in expression under short day conditions but not long day conditions. In addition, overexpression of VrCOL2 accelerated flowering in A. thaliana under short day conditions by activating the expression of flowering time gene AtFT and AtTSF.Conclusion: Overall, we identified 14 VrCOL genes from mungbean using genome-wide identification. Characteristics and transcription pattern analysis of VrCOL genes revealed their important roles in plant growth and development, and our results suggested that VrCOL2 regulate flowering time under short day conditions in A. thaliana. Our study lays the foundation for further dissection of VrCOL gene functions.

scholarly journals Functional characterization of mungbean CONSTANS-LIKE genes reveals a key role for CONSTANS-LIKE 2 in the control of flowering time under short-day conditions

2020 ◽  
Author(s):  
Chenyang Liu ◽  
Qianqian Zhang ◽  
Hong Zhu ◽  
Chunmei Cai ◽  
Shuai Li
Keyword(s):  
Plant Growth ◽  
Flowering Time ◽  
Growth And Development ◽  
Expression Patterns ◽  
Functional Characterization ◽  
Plant Growth And Development ◽  
Promoter Regions ◽  
Short Day ◽  
Close Phylogenetic Relationship ◽  
Gene Structures

Abstract Background CONSTANS-LIKE (COL) genes play important roles in the regulation of plant growth and development, and they have been analyzed in many plant species. However, few investigations have examined COL genes in mungbean (Vigna radiata). Results In this study, we identified and characterized a total 14 of VrCOL genes from mungbean, which distributed on 7 of the 11 mungbean chromosomes. Based on their conserved domains, VrCOLs were clustered into three groups (I, II and III), which contained 4, 5 and 5 members, respectively. The gene structures and conserved motifs of the VrCOL genes were analyzed, and two duplicated gene pairs, VrCOL2/VrCOL5 and VrCOL6/VrCOL9, were identified. A total of 82 cis-acting elements were found in the VrCOL promoter regions, and the numbers and types of cis-acting elements in each VrCOL promoter region differed. As a result, VrCOLs showed distinct expression patterns in different tissues. Among these VrCOL genes, VrCOL2 showed a close phylogenetic relationship with Arabidopsis thaliana (A. thaliana) CO and displayed daily oscillations in expression under short day conditions but not long day conditions. In addition, overexpression of VrCOL2 accelerated flowering in A. thaliana under short day conditions by activating the expression of flowering time gene FT and TSF. Conclusion Overall, we identified 14 VrCOL genes from mungbean using genome-wide identification. Characteristics and transcription pattern analysis of VrCOL genes revealed their important roles in plant growth and development, and our results suggested that VrCOL2 regulate flowering time under short day conditions. Our study lays the foundation for further dissection of VrCOL gene functions.

Identification of Differentially Expressed Genes Using cDNA-AFLP During Six Days In Vitro Tuberization of Potato

Zuriat ◽  
2015 ◽  
Vol 14 (1) ◽  
Author(s):  
Nono Carsono ◽  
Christian Bachem
Keyword(s):  
Gene Expression ◽  
Developmental Process ◽  
Expression Patterns ◽  
Induction Medium ◽  
In Vitro Tuberization ◽  
Storage Organ ◽  
Developmentally Regulated ◽  
Study Gene Expression ◽  
Differential Pattern

Tuberization in potato is a complex developmental process resulting in the differentiation of stolon into the storage organ, tuber. During tuberization, change in gene expression has been known to occur. To study gene expression during tuberization over the time, in vitro tuberization system provides a suitable tool, due to its synchronous in tuber formation. An early six days axillary bud growing on tuber induction medium is a crucial development since a large number of genes change in their expression patterns during this period. In order to identify, isolate and sequencing the genes which displaying differential pattern between tuberizing and non-tuberizing potato explants during six days in vitro tuberization, cDNA-AFLP fingerprint, method for the visualization of gene expression using cDNA as template which is amplified to generate an RNA-fingerprinting, was used in this experiment. Seventeen primer combinations were chosen based on their expression profile from cDNA-AFLP fingerprint. Forty five TDFs (transcript derived fragment), which displayed differential expressions, were obtained. Tuberizing explants had much more TDFs, which developmentally regulated, than those from non tuberizing explants. Seven TDFs were isolated, cloned and then sequenced. One TDF did not find similarity in the current databases. The nucleotide sequence of TDF F showed best similarity to invertase ezymes from the databases. The homology of six TDFs with known sequences is discussed in this paper.

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