A Comparative Analysis of Methylation Status of Tumor Suppressor Genes in Paired Biopsy and Serum Samples from Cervical Cancer Patients among North Indian Population

2016 ◽  
Vol 52 (2) ◽  
pp. 255-259
Author(s):  
A. K. Jha ◽  
V. Sharma ◽  
M. Nikbakht ◽  
V. Jain ◽  
A. Sehgal ◽  
...  
2021 ◽  
Author(s):  
Dejuan Yang ◽  
Yue Wu ◽  
Qin Xiang ◽  
Dishu Zhou ◽  
Zhu Qiu ◽  
...  

Abstract Background: Aberrant methylation of tumor suppressor genes is a common feature of breast cancer. Identifying a panel of methylated genes that are sensitive and specific for breast cancer could help to diagnose and predict prognosis of breast cancer.Methods: We determined the methylation status of DACT1, PAX5, PLCD1, ZNF545 and TET1 in 32 benign controls, 237 cancer tissue samples and 33 paired plasma samples.Results: PAX5 and PLCD1 showed exceedingly high methylation rates with percentages of 69.2% and 54.9%, whereas the methylation percentage of DACT1, ZNF545 and TET1 were 33.8%, 28.7% and 18.2% in cancer samples, respectively. A better survival of patients with ZNF545 methylation (p = 0.0350) was detected. Correlation of promoter methylation and clinicopathological features in 32 individuals with benign disease and 237 cancer patients demonstrated that methylated status of DACT1 (p=0.012), PLCD1 (p=0.013), and ZNF545 (p=0.012) had significant difference in age, and the methylation of PAX5 (p=0.006) was correlated with absence of hormone receptors, which implied an adverse outcome. PAX5 and PLCD1 both had high sensitivity (69.20% and 54.85%, respectively) and high specificity (87.50% and 100.00%, respectively). Patients with methylation of PAX5 likely to have a higher risk of breast cancer (OR=15.726, 95% CI=5.323-46.463, p<0.001), and statistical analysis of public online database showed the similar results. Conclusion: PAX5, PLCD1, ZNF545 and TET1 may serve as new potential diagnostic and prognostic biomarkers for breast cancer.


2017 ◽  
Vol 35 (1) ◽  
pp. 122-131 ◽  
Author(s):  
Agnieszka Bukowska-Damska ◽  
Edyta Reszka ◽  
Pawel Kaluzny ◽  
Edyta Wieczorek ◽  
Monika Przybek ◽  
...  

2010 ◽  
Vol 55 (12) ◽  
pp. 3449-3457 ◽  
Author(s):  
Tomomitsu Tahara ◽  
Tomoyuki Shibata ◽  
Masakatsu Nakamura ◽  
Hiromi Yamashita ◽  
Daisuke Yoshioka ◽  
...  

2021 ◽  
Vol 39 (15_suppl) ◽  
pp. e16197-e16197
Author(s):  
Oleg I. Kit ◽  
Vladimir S. Trifanov ◽  
Natalya N. Timoshkina ◽  
Dmitry Yu. Gvaldin ◽  
Milana Yu. Mesheryakova ◽  
...  

e16197 Background: Aberrant DNA methylation is a characteristic feature of cancer, affecting gene expression and tumor phenotype. In this study, we quantified the methylation of promoters of eight tumor suppressor genes in pancreatic neuroendocrine tumors (Pan-NET). Methods: The method of pyrosequencing was used to quantity level (Met,%) of methylation of gene promoters - tumor suppressors AHRR, APC1A, DAPK, MGMT, MLH1, P16, RASSF1A, RUNX3 in tumor samples from 55 patients with pancreatic NET (G1-G3) and in the blood of 10 healthy donors. Met for each sample was calculated as the median methylation of CpG sites in triplicate. Results: Hypermethylation was observed for AHRR (75%), APC1A (25%), RASSF1A (30%). In contrast, DAPK, MGMT, MLH1, P16, RUNX3 had low methylation levels ( < 20%). The median of methylation in the blood of healthy donors for AHRR was 91% (76-98); for all other loci it did not exceed 6%. A high incidence of methylation in excess of blood levels in healthy donors was identified for RASSF1A (0.96); AHRR (0.75); MGMT (0.65); RUNX3 (0.41), APC1A (0.25). For tumor suppressor P16, only one case of increased methylation was recorded (Met = 15%), despite the fact that this phenomenon is not uncommon for NETs of other localizations. In 66% of pancreatic NET cases, hypermethylation of more than two promoters of tumor suppressor genes was noted. An association tendency was found between the presence of MEN1 mutations and the RASSF1A methylation level (p = 0.08). Correlation analysis revealed a significant level of negative association between changes in methylation of MLH1 and AHRR (p < 0.01); for the latter, the prognostic value of a high methylation status and a better prognosis for many malignant neoplasms were described. Conclusions: In the present study, significant methylation of the promoters of the APC1A, DAPK, MGMT, RASSF1A, and RUNX3 genes in well-differentiated pancreatic NETs was identified with a high frequency. At the same time, isolated cases of hypermethylation were noted for the well-known tumor suppressors MLH1 and P16.


2016 ◽  
Vol 61 (2) ◽  
pp. 317-324 ◽  
Author(s):  
Łukasz Witek ◽  
Tomasz Janikowski ◽  
Piotr Bodzek ◽  
Anita Olejek ◽  
Urszula Mazurek

Blood ◽  
2007 ◽  
Vol 110 (11) ◽  
pp. 2487-2487
Author(s):  
Carmen Stanganelli ◽  
Jorge Arbelbide ◽  
Juliana Zimerman ◽  
Dorotea Beatriz Fantl ◽  
Claudia Corrado ◽  
...  

Abstract There is increasing evidence that, in addition to genetic aberrations, epigenetic processes play a major role in carcinogenesis. Particularly, hypermethylation of CpG islands of the promoter regions of tumor suppressor genes (TSG) is now considered as an important epigenetic mechanism for gene inactivation. Multiple myeloma (MM) is characterized by neoplastic proliferation of monoclonal plasma cells. The natural course of disease may progress through monoclonal gammopathy of undetermined significance (MGUS) to MM. During this process, multiple genetic alterations are sequentially acquired and aberrant promoter hypermethylation might be one of the steps involved in this progression. In this study, we have evaluated methylation status of the following TSG: p15INK4b, p16INK4a, p14ARF, SOCS-1, p27KIP1, RASSF1A and p73 genes, in order to determine if they were involved in the evolution of MGUS to MM. Forty four MM (21 males; mean age 67.5 years; Durie-Salmon clinical stages: I: 20%, II:14% and III: 66%) and 21 MGUS patients (6 males; mean age 68 years) were study. All patients gave informed consent and the study was approved by the Ethics Committee of our Institution. Peripheral blood samples from 10 normal individuals and CpGenome Universal Methylated DNA (Chemicon International) were used as negative and positive controls, respectively. DNA was extracted from bone marrow cells of patients and peripheral blood lymphocytes of controls using phenol/chloroform method. Methylation status was performed using Methylation Specific PCR (MSP) technique. For statistical analysis, Student t and Fisher exact tests were used. The methylation index (MI; ratio between the number of genes methylated and the number of genes analyzed) was also calculated. SOCS-1 gene methylation was significantly more frequent in MM (52%) than in MGUS patients (14%) (p=0,006). Frequencies of methylation of p14ARF, p15INK4b, p16INK4a and RASSF1A were comparable in both entities: 29%, 32%, 7% and 2%, respectively, for MM; and 29%, 29%, 5% and 0%, respectively, for MGUS. TP73 gene showed a tendency of higher methylation in MM (45%) than in MGUS (33%). All patients lacked methylation at p27KIP1 gene. Whereas the percentage of MM with at least one gene methylated (84%) did not showed differences to that of MGUS (66%), the mean MI of MGUS was lower (0.16; range 0.14-0.43) than that of MM (0.24; range 0.14-0.71) (p&lt;0.05). None of the target genes were methylated in normal samples. No statistical significant correlation with clinical characteristics: gender, age, isotype, level of M-component, type of light chain, stage of the disease, haemoglobin, serum albumin level, calcium, β2 microglobulin and LDH, were observed. To our knowledge, this is the first report of methylation in MM and MGUS from Argentina. The similar frequency of p14ARF, p15INK4b, p16INK4a and RASSF1A gene methylation observed in MM and MGUS would suggest that they are probably not involved in the progression of MGUS. However, SOCS1 gene methylation was significantly more frequent in MM than in MGUS suggesting that methylation of this gene might be involved in clonal evolution of MGUS to MM. SOCS1 is a negative regulator of cytokine signaling, being important in normal lymphocyte development and differentiation. Silencing of SOCS1 may result in greater responsiveness to cytokines, which may favour the neoplastic development.


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