scholarly journals Varimax Rotated Principal Component Analysis of Productive Traits in Nigeria Indigenous Cattle Raised under Semi-Intensive Management System

Author(s):  
D. S. Bunjah Umar ◽  
R. O. Okeke ◽  
A. C. Nwanmmo ◽  
M. O. Bello ◽  
O. G. Allen ◽  
...  

The objectives of this study were to quantify the production traits using principal component analysis in Bunaji and Gudali cattle. Morphological traits of Body weight (Kg); BL: Body Length (Cm); HW: Height at withers (cm); CW: Chest width (cm); HG: Heart Girth (cm); Rumwi: Rump width (cm); TL: Teat Length (cm); RUH: Rear Udder Height (cm); UC: Udder Circumference (cm) and lactation traits of TY: Total Yield (Litres); ADY: Average Daily Yield (Litres/day) and LL: Lactation Length (days) were measured. To find the traits that were clustered together, data were fed to the principal component matrix of J.M.P genomics statistical software. In general, communalities varied from 0.32 to 0.91, and the proportion of variance accounted for by variables was 48 percent Bunaji, 0.31 to 0.99 for communalities, and 58 percent in Gudali cows. The information on principal component analysis will facilitate their efficient use in breeding programs for genetic gain and genetic improvement programs in indigenous Nigeria cattle.

Author(s):  
Sebastião Soares de Oliveira Neto ◽  
Matheus Kainan de Paula Manjavachi ◽  
Douglas Mariani Zeffa ◽  
Maria Márcia Pereira Sartori ◽  
Maurício Dutra Zanotto

ABSTRACT Castor bean (Ricinus communis L.) is an oilseed found in different regions worldwide, due to its easy propagation and adaptability. Cropping more productive disease-resistant genotypes that enable a mechanized production ensures greater economic returns for farmers. This study aimed to morphologically characterize and select promising castor bean accessions for mechanized cropping, mainly as a source of genetic variability for breeding programs with this purpose. Fifty accessions were assessed. Analysis of variance, dissimilarity clustering via the unweighted pair-group method with arithmetic mean (UPGMA) and principal component analysis were used to analyze the collected data. The dissimilarity analysis based on the Gower distance for qualitative and quantitative variables revealed three groups of accessions and the principal component analysis enabled the selection of those with desirable traits. The accessions BOC1, PRAT1 and SM2 exhibited morpho-agronomic characteristics of interest to the mechanized production, such as ideal plant height, diameter, seed weight and oil content. Such genotypes show a potential for use as genitors in genetic breeding programs of castor bean.


Author(s):  
Berk Benlioglu ◽  
Ugur Ozkan

Background: Mungbean [Vigna radiata (L.) Wilczek] is known as one of the important crop of the Vigna group. In order to determine morphological traits of mungbean, multivariate analysis will provide important advantages in the selection phase of future breeding programs. Multivariate statistical analysis was used to determine and classify these traits. Multivariate analysis, that includes principal component analysis (PCA) and cluster analysis (CA), is considered the best tool for selecting promising genotypes in the future breeding programs. Methods: Eighteen landraces and two species were used to classify morphological traits in this study. Nine different morphological traits were observed during the research period. These are; days to 50% flowering (DFT), plant height (PH), branches per plant (BPP), clusters per plant (CPP), number of pods per cluster (PPC), seed yield per plot (SYPP), biomass yield per plot (BYPP), harvest index (HI), 1000 seed weight (SW). Result: Principal component analysis (PCA) revealed a high level of variation among the genotypes. Therefore, high variability was observed in DFT (36-59 day), PH (39-76 cm), BPP (3-7), CPP (4-21), SYPP (231-824 g), BYPP (3300-10300 g), HI (6.77-11.25%) and 1000 SW (19.95-50.50 g). According to cluster analysis, landraces with the least genetic diversity distance between them in terms of morphological traits examined were determined as 2 and 3.


VASA ◽  
2012 ◽  
Vol 41 (5) ◽  
pp. 333-342 ◽  
Author(s):  
Kirchberger ◽  
Finger ◽  
Müller-Bühl

Background: The Intermittent Claudication Questionnaire (ICQ) is a short questionnaire for the assessment of health-related quality of life (HRQOL) in patients with intermittent claudication (IC). The objective of this study was to translate the ICQ into German and to investigate the psychometric properties of the German ICQ version in patients with IC. Patients and methods: The original English version was translated using a forward-backward method. The resulting German version was reviewed by the author of the original version and an experienced clinician. Finally, it was tested for clarity with 5 German patients with IC. A sample of 81 patients were administered the German ICQ. The sample consisted of 58.0 % male patients with a median age of 71 years and a median IC duration of 36 months. Test of feasibility included completeness of questionnaires, completion time, and ratings of clarity, length and relevance. Reliability was assessed through a retest in 13 patients at 14 days, and analysis of Cronbach’s alpha for internal consistency. Construct validity was investigated using principal component analysis. Concurrent validity was assessed by correlating the ICQ scores with the Short Form 36 Health Survey (SF-36) as well as clinical measures. Results: The ICQ was completely filled in by 73 subjects (90.1 %) with an average completion time of 6.3 minutes. Cronbach’s alpha coefficient reached 0.75. Intra-class correlation for test-retest reliability was r = 0.88. Principal component analysis resulted in a 3 factor solution. The first factor explained 51.5 of the total variation and all items had loadings of at least 0.65 on it. The ICQ was significantly associated with the SF-36 and treadmill-walking distances whereas no association was found for resting ABPI. Conclusions: The German version of the ICQ demonstrated good feasibility, satisfactory reliability and good validity. Responsiveness should be investigated in further validation studies.


2020 ◽  
Vol 4 (11) ◽  
pp. 676-681
Author(s):  
V.V. Sapozhnikova ◽  
◽  
A.L. Bondarenko ◽  

Aim: to determine the association between clinical laboratory parameters, the production of cytokines (IL-17A, -23, -33, -35), and specific IgM and IgG in the serum of patients with Lyme borreliosis without erythema migrans. Patients and Methods: complete blood count, the concentrations of IL-17A, -23, -33, -35, and the levels of specific IgM and IgG were measured during acute infection and convalescence (n=30). The control group included age- and sex-matched healthy individuals (n=30). Statistical analysis was performed using the StatSoft Statistica v 10.0 software (parametric and non-parametric methods and multifactorial analysis, i.e., principal component analysis). Results: most (80%) patients with Lyme borreliosis without erythema migrans are the people of working age. In most patients, the combination of the specific antibodies against Borrelia afzelii and Borrelia garinii (76.7%) and severe intoxication and inflammatory process (100%) were detected. Moderate and severe disease associated with meningism was diagnosed in 90% and 10%, respectively. The mean duration of hectic period was 8.3±1.27 days. Abnormal ECG was reported in 40% of patients, i.e., conduction abnormalities in 20%, sinus bradycardia in 16.7%,and sinus tachycardia in 3.3%. The clinical laboratory signs of hepatitis without jaundice were identified in 26.7%. During treatment, the significant reduction in band and segmented neutrophil counts as well as the significant increase in platelet count were revealed compared to these parameters at admission. Abnormal cytokine levels (i.e., the increase in IL-17A, -23, -33 and the deficiency of IL-35) were detected. Conclusions: multifactorial analysis has demonstrated that the severity of immunological abnormalities in patients with Lyme borreliosis without erythema migrans is associated with fever, cardiac and liver disorders, the high levels of IL-23 and IL-33, and the lack of IL-35 and specific IgM and IgG. KEYWORDS: tick-borne borreliosis, Lyme disease without erythema migrans, clinical laboratory signs, cytokines, specific antibodies, multifactorial analysis, principal component analysis. FOR CITATION: Sapozhnikova V.V., Bondarenko A.L. Multifactorial analysis of clinical laboratory signs, the levels of IL-17A, IL-23, IL-33, IL-35, and specific antibodies in the serum of patients with Lyme borreliosis without erythema migrans. Russian Medical Inquiry. 2020;4(11):676–681. DOI: 10.32364/2587-6821-2020-4-11-676-681.


2018 ◽  
Vol 6 (7) ◽  
pp. 715-723 ◽  
Author(s):  
Stephany C. de Rezende ◽  
Jo鉶 A. Pinto ◽  
Isabel P. Fernandes ◽  
Fernanda V. Leimann and Maria-Filomena Barreiro

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