Bacterial Response to Oxidative Stress and RNA Oxidation

Bacteria have to cope with oxidative stress caused by distinct Reactive Oxygen Species (ROS), derived not only from normal aerobic metabolism but also from oxidants present in their environments. The major ROS include superoxide O2−, hydrogen peroxide H2O2 and radical hydroxide HO•. To protect cells under oxidative stress, bacteria induce the expression of several genes, namely the SoxRS, OxyR and PerR regulons. Cells are able to tolerate a certain number of free radicals, but high levels of ROS result in the oxidation of several biomolecules. Strikingly, RNA is particularly susceptible to this common chemical damage. Oxidation of RNA causes the formation of strand breaks, elimination of bases or insertion of mutagenic lesions in the nucleobases. The most common modification is 8-hydroxyguanosine (8-oxo-G), an oxidized form of guanosine. The structure and function of virtually all RNA species (mRNA, rRNA, tRNA, sRNA) can be affected by RNA oxidation, leading to translational defects with harmful consequences for cell survival. However, bacteria have evolved RNA quality control pathways to eliminate oxidized RNA, involving RNA-binding proteins like the members of the MutT/Nudix family and the ribonuclease PNPase. Here we summarize the current knowledge on the bacterial stress response to RNA oxidation, namely we present the different ROS responsible for this chemical damage and describe the main strategies employed by bacteria to fight oxidative stress and control RNA damage.

Polymer Degradation through Chemical Change: A Quantum-based Test of Inferred Reactions in Irradiated Polydimethylsiloxane

Chemical reaction schemes are key conceptual tools for interpreting the results of experiments and simulations, but often carry implicit assumptions that remain largely unverified for complicated systems. Established schemes for chemical damage through crosslinking in irradiated silicone polymers comprised of polydimethylsiloxane (PDMS) date to the 1950's and correlate small-molecule off-gassing with specific crosslink features. In this regard, we use a somewhat reductionist model to develop a general conditional probability and correlation analysis approach that tests these types of causal connections between proposed experimental observables to reexamine this chemistry through quantum-based molecular dynamics (QMD) simulations. Analysis of the QMD simulations suggests that the established reaction schemes are qualitatively reasonable, but lack strong causal connections under a broad set of conditions that would enable making direct quantitative connections between off-gassing and crosslinking. Further assessment of the QMD data uncovers a strong (but nonideal) quantitative connection between exceptionally hard-to-measure chain scission events and the formation of silanol (Si-OH) groups. Our analysis indicates that conventional notions of radiation damage to PDMS should be further qualified and not necessarily used ad hoc. In addition, our efforts enable independent quantum-based tests that can inform confidence in assumed connections between experimental observables without the burden of fully elucidating entire reaction networks.

What do we need to know about hair straightening?

<p class="abstract"><span lang="EN-US">Hair straightening is a popular hair procedure. The first hair straightening products were used for African hair. Various modes of hair straightening methods are currently being used. Temporary methods like blow drying and ironing are used for easy manageability of hair, both by modern men and women. Salon- based hair straighteners were initially permanent relaxers which, with time, evolved to formaldehyde-free hair strengthening procedures like hair Botox which is currently in trend. It improves hair manageability, increases hair strength and reduces frizz without producing much chemical damage to hair and by maintaining their natural waves, thereby producing a more natural look. We performed a thorough literature search on the topic in PubMed, consulted various hair stylists and beauty school professors prior to formulation of this article. The article aims at understanding the basic mechanisms involved in various hair straightening methods which helps us to advice patients on a wholesome care of hair.</span></p>

Reliability and Comparison of Some GEANT4-DNA Processes and Models for Proton Transportation: An Ultra-Thin Layer Study

This chapter presents a specific reliability study of some GEANT4-DNA (version 10.02.p01) processes and models for proton transportation considering ultra-thin layers (UTL). The Monte Carlo radiation transport validation is fundamental to guarantee the simulation results accuracy. However, sometimes this is impossible due to the lack of experimental data and, it is then that the reliability evaluation takes an important role. Geant4-DNA runs in an energy range that makes impossible, nowadays, to perform a proper microscopic validation (cross-sections and dynamic diffusion parameters) and allows very limited macroscopic reliability. The chemical damage cross-sections reliability (experiment versus simulation) is a way to verify the consistency of the simulation results which is presented for 2 MeV incident protons beam on PMMA and PVC UTL. A comparison among different Geant4-DNA physics lists for incident protons beams from 2 to 20 MeV, interacting with homogeneous water UTL (2 to 200 nm) was performed. This comparison was evaluated for standard and five other optional physics lists considering radial and depth profiles of deposited energy as well as number of interactions and stopping power of the incident particle.

Ubiquitination Regulators Discovered by Virtual Screening for the Treatment of Cancer

The ubiquitin-proteasome system oversees cellular protein degradation in order to regulate various critical processes, such as cell cycle control and DNA repair. Ubiquitination can serve as a marker for mutation, chemical damage, transcriptional or translational errors, and heat-induced denaturation. However, aberrant ubiquitination and degradation of tumor suppressor proteins may result in the growth and metastasis of cancer. Hence, targeting the ubiquitination cascade reaction has become a potential strategy for treating malignant diseases. Meanwhile, computer-aided methods have become widely accepted as fast and efficient techniques for early stage drug discovery. This review summarizes ubiquitination regulators that have been discovered via virtual screening and their applications for cancer treatment.

In Vitro Evaluation of No-Carrier-Added Radiolabeled Cisplatin ([189, 191Pt]cisplatin) Emitting Auger Electrons

Due to their short-range (2–500 nm), Auger electrons (Auger e−) have the potential to induce nano-scale physiochemical damage to biomolecules. Although DNA is the primary target of Auger e−, it remains challenging to maximize the interaction between Auger e− and DNA. To assess the DNA-damaging effect of Auger e− released as close as possible to DNA without chemical damage, we radio-synthesized no-carrier-added (n.c.a.) [189, 191Pt]cisplatin and evaluated both its in vitro properties and DNA-damaging effect. Cellular uptake, intracellular distribution, and DNA binding were investigated, and DNA double-strand breaks (DSBs) were evaluated by immunofluorescence staining of γH2AX and gel electrophoresis of plasmid DNA. Approximately 20% of intracellular radio-Pt was in a nucleus, and about 2% of intra-nucleus radio-Pt bound to DNA, although uptake of n.c.a. radio-cisplatin was low (0.6% incubated dose after 25-h incubation), resulting in the frequency of cells with γH2AX foci was low (1%). Nevertheless, some cells treated with radio-cisplatin had γH2AX aggregates unlike non-radioactive cisplatin. These findings suggest n.c.a. radio-cisplatin binding to DNA causes severe DSBs by the release of Auger e− very close to DNA without chemical damage by carriers. Efficient radio-drug delivery to DNA is necessary for successful clinical application of Auger e−.

In Vitro Evaluation of No-carrier-added Radiolabeled Cisplatin ([189, 191Pt]cisplatin) Emitting Auger Electrons

Due to their short range (2&ndash;500 nm), Auger electrons (Auger e-) have the potential to induce nano-scale physiochemical damage to biomolecules. Although DNA is the primary target of Au-ger e-, it remains challenging to maximize the interaction between Auger e- and DNA. To assess the DNA-damaging effect of Auger e- released as close as possible to DNA without chemical damage, we radio-synthesized no-carrier-added (n.c.a.) [189, 191Pt]cisplatin and evaluated both its in vitro properties and DNA-damaging effect. Cellular uptake, intracellular distribution, and DNA binding were investigated, and DNA double-strand breaks (DSBs) were evaluated by im-munofluorescence staining of &gamma;H2AX and gel electrophoresis of plasmid DNA. Approximately 20% of intracellular radio-Pt was in a nucleus, and about 2% of intra-nucleus radio-Pt bound to DNA, although uptake of n.c.a. radio-cisplatin was low (0.6% incubated dose after 25-h incuba-tion), resulting in the frequency of cells with &gamma;H2AX foci was low (1%). Nevertheless, some cells treated with radio-cisplatin had &gamma;H2AX aggregates unlike non-radioactive cisplatin. These findings suggest n.c.a. radio-cisplatin binding to DNA causes severe DSBs by release of Auger e- very close to DNA without chemical damage by carriers. Efficient radio-drug delivery to DNA is necessary for successful clinical application of Auger e-.

Influence of graphene-based materials on invertebrate and vertebrate

With the rapid increased application of graphene and related materials (GRMs) in the industrial community, its release in the environment is gradually increased. The toxic effects of GRMs has drawn our attention. We characterised the toxic effects of GRMs on invertebrates and vertebrates and the common toxic mechanism, which can be classified as physical and chemical damage. This work gives a brief understanding of the toxic effects and mechanisms of GRMs.