Morpho-Functional Traits Reveal Differences in Size Fractionated Phytoplankton Communities but Do Not Significantly Affect Zooplankton Grazing

The recent emergence of approaches based on functional traits allows a more comprehensive evaluation of the role of functions and interactions within communities. As phytoplankton size and shape are the major determinants of its edibility to herbivores, alteration or loss of some morpho-functional phytoplankton traits should affect zooplankton grazing, fitness and population dynamics. Here, we investigated the response of altered phytoplankton morpho-functional trait distribution to grazing by zooplankton with contrasting food size preferences and feeding behaviors. To test this, we performed feeding trials in laboratory microcosms with size-fractionated freshwater phytoplankton (3 size classes, >30 µm; 5–30 µm and <5 µm) and two different consumer types: the cladoceran Daphnia longispina, (generalist unselective filter feeder) and the calanoid copepod Eudiaptomus sp. (selective feeder). We observed no significant changes in traits and composition between the controls and grazed phytoplankton communities. However, community composition and structure varied widely between the small and large size fractions, demonstrating the key role of size in structuring natural phytoplankton communities. Our findings also highlight the necessity to combine taxonomy and trait-based morpho-functional approaches when studying ecological dynamics in phytoplankton-zooplankton interactions.

Growth at the limits: comparing trace metal limitation of a freshwater cyanobacterium (Dolichospermum lemmermannii) and a freshwater diatom (Fragilaria crotonensis)

Freshwater phytoplankton blooms are increasing in prevalence and there are conflicting views on whether trace metals limit growth of key species and thus bloom formation. The Taupō Volcanic Zone (TVZ), New Zealand, was formed by multiple eruptions of a super-volcano which emitted rhyolitic tephra leaving lakes depleted in trace metals. This provides an opportunity to test the potential of trace metal limitation on freshwater phytoplankton growth under nanomolar concentrations. Growth responses of two algal species isolated from Lake Taupō, Dolichospermum lemmermannii (cyanobacteria) and Fragilaria crotonensis (diatom), to six biologically important trace metals (manganese, iron, zinc, cobalt, copper and molybdenum) were examined in culture experiments. These were conducted at three trace metal concentrations: (1) ambient, (2) two-times ambient, and (3) ten-times ambient concentrations in Lake Taupō. Elevated concentrations of iron significantly increased growth rates and maximum cell densities in D. lemmermannii, whereas no significant concentration dependence was observed for other trace metals. Fragilaria crotonensis showed no significant growth response to elevated concentrations of trace metals. These results highlight the importance of iron as a growth limiting nutrient for cyanobacteria and indicate that even small (twofold) increases in Fe concentrations could enhance cyanobacteria growth rates in Lake Taupō, potentially causing cyanobacterial blooms.

Phytool, a ShinyApp to homogenise taxonomy of freshwater microalgae from DNA barcodes and microscopic observations

Methods for biomonitoring of freshwater phytoplankton are evolving rapidly with eDNA-based methods, offering great complementarity with microscopy. Metabarcoding approaches have been more commonly used over the last years, with a continuous increase in the amount of data generated. Depending on the researchers and the way they assigned barcodes to species (bioinformatic pipelines and molecular reference databases), the taxonomic assignment obtained for HTS DNA reads might vary. This is also true for traditional taxonomic studies by microscopy with regular adjustments of the classification and taxonomy. For those reasons (leading to non-homogeneous taxonomies), gap-analyses and comparisons between studies become even more challenging and the curation processes to find potential consensus names are time-consuming. Here, we present a web-based application (Phytool), developed with ShinyApp (Rstudio), that aims to make the harmonisation of taxonomy easier and in a more efficient way, using a complete and up-to-date taxonomy reference database for freshwater microalgae. Phytool allows users to homogenise and update freshwater phytoplankton taxonomical names from sequence files and data tables directly uploaded in the application. It also gathers barcodes from curated references in a user-friendly way in which it is possible to search for specific organisms. All the data provided are downloadable with the possibility to apply filters in order to select only the required taxa and fields (e.g. specific taxonomic ranks). The main goal is to make accessible to a broad range of users the connection between microscopy and molecular biology and taxonomy through different ready-to-use functions. This study estimates that only 25% of species of freshwater phytoplankton in Phytobs are associated with a barcode. We plead for an increased effort to enrich reference databases by coupling taxonomy and molecular methods. Phytool should make this crucial work more efficient. The application is available at https://caninuzzo.shinyapps.io/phytool_v1/

Effect of Lowered pH on Community Composition, Growth and Cell Morphology of Freshwater Phytoplankton

This experiment studied the probable effects of lowered pH (6.5 to 5.0) on four freshwater phytoplankton species Chlorella vulgaris Beyerinck, Scenedesmus quadricauda (Turpin) Brebbison, Euglena granulata (Klebs) Schmitz and Gomphonema subtile Ehrenberg. The initial community composition was 2:2:1:1 for the four taxa respectively, which changed to 1.7:1.6:1:1 in pH 6.0, 1.6:2:1.6:1 in pH 5.5 and 1.2:2:1.8:1 in pH 5.0. The two chlorophytes showed almost gradual decreasing in growth rates and cell densities with the decreases in pH values, while diatom E. granulata showed more tolerance in a wide range of pH (6.5 to 5.5). Conspicuous changes in total biomass first observed in pH 6.0 and it reached the drastic level in pH 5.0. Moreover, significant changes in cell size of S. qaudricuada and E. granulata were found in pH 5.0 only. This lowered pH range has no effects on cell shape of the studied phytoplankton species.

Comparative analysis of freshwater phytoplankton communities in two lakes of Burabay National Park using morphological and molecular approaches

We analyzed phytoplankton assemblages’ variations in oligo-mesotrophic Shchuchie and Burabay lakes using traditional morphological and next-generation sequencing (NGS) approaches. The total phytoplankton biodiversity and abundance estimated by both microscopy and NGS were significantly higher in Lake Burabay than in Lake Shchuchie. NGS of 16S and 18S rRNA amplicons adequately identify phytoplankton taxa only on the genera level, while species composition obtained by microscopic examination was significantly larger. The limitations of NGS analysis could be related to insufficient coverage of freshwater lakes phytoplankton by existing databases, short algal sequences available from current instrumentation, and high homology of chloroplast genes in eukaryotic cells. However, utilization of NGS, together with microscopy allowed us to perform a complete taxonomic characterization of phytoplankton lake communities including picocyanobacteria, often overlooked by traditional microscopy. We demonstrate the high potential of an integrated morphological and molecular approach in understanding the processes of organization in aquatic ecosystem assemblages.

Impacts of pH and salinity on community composition, growth and cell morphology of three freshwater phytoplankton

Impacts of climate change on phytoplankton species are very focusing issues nowadays. This research explored the probable impacts of different pH (pH 5.90 to 9.10) and salinity (0.60 to 3.0 ppt) concentrations on freshwater phytoplankton Chlorella vulgaris, Euglena granulata and Scenedesmus quadricauda. The initial community composition was 4:2:1 for the three taxa, which changed to 6:3:1, 6:2:1, 6:3.5:1 and 9:4:1 in pH 5.90, pH 9.10 and salinity 2.20 and 3.0 ppt respectively. E. granulata showed more tolerance in a wide range of pH (pH 5.90 to 8.30) based on growth rate studies. The other two species showed growth rates reduction gradually in changes with pH and salinity concentrations. Conspicuous changes of total biomass were seen in pH 5.90 and 9.10, and salinity 2.20 and 3.0 ppt conditions. Moreover, significant changes in cell morphology were found in pH 9.10 and 3.0 ppt salinity. The authors concluded that as group, the Chlorophytes were more susceptible than the diatom in these variable pH and salinity conditions, while S. quadricauda was comparatively more vulnerable as a single species.