Noise Reduction, Enhancement and Classification for Sonar Images

Ultrasound imaging has some problems with image properties output. These affects the specialist decision. Ultrasound noise type is the speckle noise which has a grainy pattern depending on the signal. There are two parts of this study. The first part is the enhancing of images with adaptive Weiner, Lee, Gamma and Frost filters with 3x3, 5x5, and 7x7 sliding windows. The evaluated process was achieved using signal to noise ratio (SNR), peak signal to noise ratio (PSNR), mean square error (MSE), and maximum difference (MD) criteria. The second part consists of simulating noise in a standard image (Lina image) by adding different percentage of speckle noise from 0.01 to 0.06. The supervised classification based minimum distance method is used to evaluate the results depending on selecting four blocks located at different places on the image. Speckle noise was added with different percentage from 0.01 to 0.06 to calculate the coherent noise within the image. The coherent noise was concluded from the slope of the standard deviation with the mean for each noise. The results showed that the additive noise increased with the slide window size, while multiplicative noise did not change with the sliding window nor with increasing noise ratio. Wiener filter has the best results in enhancing the noise.

Importance of meridional winds in. forecasting sub-regional summer monsoon rainfall

ABSTRACT. Based on 35 years' (1959-1993) data, the zonal and meridional wind components of selected Indian RS/RW statiomupto 100 hPa level were analysed for the pre-monsoon months of April and May in order to associate them with sub-regional monsoon rainfall of northeast India. Composite values of monsoon rainfall and meridional components for May for excess and deficient yean have revealed that anomaly of meridional components for the middle and upper troposphere is northerly/southerly preceding excees/deficient monsoon year. The meridional winds at most of the levels of Delhi and some of the levels of Jodhpur Nagpur, Bombay and Madras for the month of May showed significant correlations (significant at 0.1% to 5% level of significance) with sub-divisional monsoon rainfall in northeast India. The temporal behaviour of correlation coefficients for Punjab and Haryana for 16 and 20-year sliding windows has exhibited rasonable temporal stability except for first few years. Multiple rearession equations for 30 and 35 year period for Haryana, Punjab and contiguous northweat India were also developed. The regression model for Punjab sub-division has shown quite good results for the independent period.

Altered Dynamic Functional Connectivity of Cuneus in Schizophrenia Patients: A Resting-State fMRI Study

Objective: Schizophrenia (SZ) is a functional mental condition that has a significant impact on patients’ social lives. As a result, accurate diagnosis of SZ has attracted researchers’ interest. Based on previous research, resting-state functional magnetic resonance imaging (rsfMRI) reported neural alterations in SZ. In this study, we attempted to investigate if dynamic functional connectivity (dFC) could reveal changes in temporal interactions between SZ patients and healthy controls (HC) beyond static functional connectivity (sFC) in the cuneus, using the publicly available COBRE dataset. Methods: Sliding windows were applied to 72 SZ patients’ and 74 healthy controls’ (HC) rsfMRI data to generate temporal correlation maps and, finally, evaluate mean strength (dFC-Str), variability (dFC-SD and ALFF) in each window, and the dwelling time. The difference in functional connectivity (FC) of the cuneus between two groups was compared using a two-sample t-test. Results: Our findings demonstrated decreased mean strength connectivity between the cuneus and calcarine, the cuneus and lingual gyrus, and between the cuneus and middle temporal gyrus (TPOmid) in subjects with SZ. Moreover, no difference was detected in variability (standard deviation and the amplitude of low-frequency fluctuation), the dwelling times of all states, or static functional connectivity (sFC) between the groups. Conclusions: Our verdict suggest that dynamic functional connectivity analyses may play crucial roles in unveiling abnormal patterns that would be obscured in static functional connectivity, providing promising impetus for understanding schizophrenia disease.

A Bayesian multiscale CNN framework to predict local stress fields in structures with microscale features

Multiscale computational modelling is challenging due to the high computational cost of direct numerical simulation by finite elements. To address this issue, concurrent multiscale methods use the solution of cheaper macroscale surrogates as boundary conditions to microscale sliding windows. The microscale problems remain a numerically challenging operation both in terms of implementation and cost. In this work we propose to replace the local microscale solution by an Encoder-Decoder Convolutional Neural Network that will generate fine-scale stress corrections to coarse predictions around unresolved microscale features, without prior parametrisation of local microscale problems. We deploy a Bayesian approach providing credible intervals to evaluate the uncertainty of the predictions, which is then used to investigate the merits of a selective learning framework. We will demonstrate the capability of the approach to predict equivalent stress fields in porous structures using linearised and finite strain elasticity theories.

Carbon Emissions and Brazilian Ethanol Prices: Are They Correlated? An Econophysics Study

Brazil is one of the largest global producers and exporters of ethanol and in 2017 launched RenovaBio, a programme aiming to mitigate greenhouse gas emissions. In parallel to this domestic scenario, there is rapid growth in the world market of carbon production, as well as complex price relations between fossil and renewable energies becoming increasingly important in recent years. The present work aims to contribute to filling a gap in knowledge about the relationship between Brazilian ethanol and other relevant energy-related commodities. We use a recent methodology (Detrended Cross-Correlation Approach—DCCA—with sliding windows) to analyze dynamically the cross-correlation levels between Brazilian ethanol prices and carbon emissions, as well as other possible-related prices, namely: sugar, Brent oil, and natural gas prices, with a sample of daily prices between January 2010 and July 2020. Our results indicate that (i) in the whole period, Brazilian ethanol has significant correlations with sugar, moderate correlation with oil in the short term, and only a weak, short-term correlation with carbon emission prices; (ii) with a sliding windows approach, the strength of the correlation between ethanol and carbon emissions varies between weak and non-significant in the short term.

Stream-based active learning for sliding windows under the influence of verification latency

Stream-based active learning (AL) strategies minimize the labeling effort by querying labels that improve the classifier’s performance the most. So far, these strategies neglect the fact that an oracle or expert requires time to provide a queried label. We show that existing AL methods deteriorate or even fail under the influence of such verification latency. The problem with these methods is that they estimate a label’s utility on the currently available labeled data. However, when this label would arrive, some of the current data may have gotten outdated and new labels have arrived. In this article, we propose to simulate the available data at the time when the label would arrive. Therefore, our method Forgetting and Simulating (FS) forgets outdated information and simulates the delayed labels to get more realistic utility estimates. We assume to know the label’s arrival date a priori and the classifier’s training data to be bounded by a sliding window. Our extensive experiments show that FS improves stream-based AL strategies in settings with both, constant and variable verification latency.

Testing for association with rare variants in the coding and non-coding genome: RAVA-FIRST, a new approach based on CADD deleteriousness score

Rare variant association tests (RVAT) have been developed to study the contribution of rare variants widely accessible through high-throughput sequencing technologies. RVAT require to aggregate rare variants in testing units and to filter variants to retain only the most likely causal ones. In the exome, genes are natural testing units and variants are usually filtered based on their functional consequences. However, when dealing with whole-genome sequence (WGS) data, both steps are challenging. No natural biological unit is available for aggregating rare variants. Sliding windows procedures have been proposed to circumvent this difficulty, however they are blind to biological information and result in a large number of tests. We propose a new strategy to perform RVAT on WGS data: “RAVA-FIRST” (RAre Variant Association using Functionally-InfoRmed STeps) comprising three steps. (1) New testing units are defined genome-wide based on functionally-adjusted Combined Annotation Dependent Depletion (CADD) scores of variants observed in the GnomAD populations, which are referred to as “CADD regions”. (2) A region-dependent filtering of rare variants is applied in each CADD region. (3) A functionally-informed burden test is performed with sub-scores computed for each genomic category within each CADD region. Both on simulations and real data, RAVA-FIRST was found to outperform other WGS-based RVAT. Applied to a WGS dataset of venous thromboembolism patients, we identified an intergenic region on chromosome 18 that is enriched for rare variants in early-onset patients and that was that was missed by standard sliding windows procedures. RAVA-FIRST enables new investigations of rare non-coding variants in complex diseases, facilitated by its implementation in the R package Ravages.