A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource

The Atlantic chub mackerel, Scomber colias Gmelin, 1789, is a medium-size pelagic fish with substantial importance in the fisheries of the Atlantic Ocean and the Mediterranean Sea. Over the past decade, this species has gained special relevance being one of the main targets of pelagic fisheries in the NE Atlantic. Here, we sequenced and annotated the first high-quality draft genome assembly of S. colias, produced with Pacbio HiFi long reads and Illumina Paired-End short reads. The estimated genome size is 814 Mb distributed into 2,028 scaffolds and 2,093 contigs with an N50 length of 4,19 and 3,34 Mb, respectively. We annotated 27,675 protein-coding genes and the BUSCO analyses indicated high completeness, with 97.3 % of the single-copy orthologs in the Actinopterygii library profile. The present genome assembly represents a valuable resource to address the biology and management of this relevant fishery. Finally, this is the fourth high-quality genome assembly within the Order Scombriformes and the first in the genus Scomber.

Bioeconomic-Epidemiological Model of Scomber colias Population in the Moroccan Coasts

In this paper, we develop and study a mathematical model for the dynamics of Scomber colias and Thunnus thynnus prey-predator with parasitic helminths. We search to analyze a bioeconomic model in which both susceptible and infected prey populations Scomber colias are exposed to the predator Thunnus thynnus, with varying degrees of exposure. However, the predator feeds preferentially on the most numerous prey types. This implies a kind of switching from the susceptible class to the infected class, and vice versa, as these two types of prey change in numerical superiority. So, the positivity, boundedness, equilibria, stability, and bioeconomic equilibrium are studied. Some numerical simulation of stability is cited. For giving a high yield and keeping the Scomber colias and Thunnus thynnus populations away from extension, we use the Maximum Principle of Pontryagin.

Microplastics in Marine and Estuarine Species From the Coast of Portugal

Microplastics (MP) have been confirmed as emerging pollutants in the marine environment due to their ubiquity, bioavailability, persistence and potential toxicity. This study contributes with valuable data regarding the abundance and characteristics of the MP found in five species collected from Portugal. The mussel Mytilus galloprovincialis (n = 140) was collected from the Tagus estuary and Porto Covo coastal area, the peppery furrow shell Scrobicularia plana (n = 140) and the polychaete Marphysa sanguinea (n = 30) both from the Sado estuary, and Trachurus trachurus (n = 82) and Scomber colias (n = 82) fished off Figueira da Foz and Sesimbra. Soft tissues of all individuals were digested using a KOH (10%) solution, which allowed the extraction of MP. All studied species presented MP. In a total of 502 MP observed from all samples, 80% were fibers and 20% were fragments, with a size range of 73 μm–4,680 μm and blue was the most common color recorded (46%). The frequency of occurrence of MP was higher in T. trachurus (70%) and lowest in M. sanguinea (17%). MP abundance ranged from 0.30 ± 0.63 MP. ind−1 in S. plana, to 2.46 ± 4.12 MP. ind−1 in S. colias. No significant correlation was found between the individual biometric parameters and total MP, fibers and fragments ingested by each species. The FTIR analysis revealed that polyester and polyethylene were the most common polymers present. These results can be used as a reference for future studies regarding the use of indicator species for monitoring MP pollution in the coast of Portugal.