On Self Organization: Model for ionization wave propagation with targets of varying electrical properties

This work presents a model for an atmospheric Helium plasma interacting with normal and cancer cells. This interaction is simulated through the expansion and impingement of a gaseous jet onto targets with varying electrical permittivity. Simulation results show that for a plasma jet impinging onto two targets with different permittivity placed axis-symmetrically relative to the stagnation point of impingement, the jet is biased toward the target with lower permittivity when the target acts as a floating potential. This trend is reversed when the back surface of the target is grounded. In the case of a floating target, higher target permittivity yields a higher positive surface potential as the material experiences higher polarization in response to the net flux of electrons from the plasma onto the surface. Because of this higher surface potential, targets with higher permittivity generate a smaller electric field in the discharge column relative to materials with lower permittivity. When the back surface of the target is ground, the trend is reversed, with polarization occurring primarily on the back surface due to the response to the reservoir of positive charges introduced by ground. In the ground case, the material experiences more negative charging the front surface which induces a lower electric potential. As a result, the material with higher permittivity and a grounded back surface attracts plasma organization at the interface because of the higher local electric field. These numerical findings support experimental results presented by other researchers, which demonstrate selectivity of plasma jets towards some cancer cells more than others. The mechanism introduced here may help inform targeted treatment of specific cells, including those reported to be more resistant to plasma jets.

Soil Nitrogen and Sulfur Leaching in a Subtropical Forest at a Transition State under Decreasing Atmospheric Deposition

Anthropogenic emissions of nitrogen- (N) and sulfur (S)-containing pollutants have declined across China in recent years. However, the responses of N and S depositions and dynamics in soil remain unclear in subtropical forests. In this study, the wet and throughfall depositions of dissolved inorganic N (DIN) and SO42− were continuously monitored in a mildly polluted subtropical forest in Southeast China in 2017 and 2018. Moreover, these solutes in soil water along the soil profile were monitored in 2018. Throughfall deposition of DIN and S decreased by 59% and 53% in recent 3 years, respectively, which can be majorly attributed to the decreases in wet depositions of NO3− and SO42−. Meanwhile, NH4+ deposition remained relatively stable at this site. Even though N deposition in 2018 was below the N saturation threshold for subtropical forests, significant N leaching still occurred. Excess export of N occurred in the upper soil layer (0–15 cm), reaching 6.86 ± 1.54 kg N/ha/yr, while the deeper soil (15–30 cm) was net sink of N as 8.29 ± 1.71 kg N/ha/yr. Similarly, S was excessively exported from the upper soil with net flux of 14.7 ± 3.15 kg S/ha/yr, while up to 6.37 ± 3.18 kg S/ha/yr of S was retained in the deeper soil. The significant N and S leaching under declined depositions suggested that this site possibly underwent a transition state, recovering from historically high acid deposition. Furthermore, the rainfall intensity remarkably regulated leaching and retention of SO42− and DIN at this site. The impacts of climate changes on N and S dynamics require further long-term monitoring in subtropical forests.

Aerosol radiative effects with dual view AOD retrievals

Seasonal maps of dual view retrieved mid-visible AOD and AODf for four selected years (1998, 2008, 2019, 2020) are introduced and assessed in comparisons to MODIS retrievals and general data of an aerosol climatology. Due to different sensor capabilities (ATSR-2, AATSR and SLSTR) there are still unresolved inconsistencies so that decadal regional trends are not as detectable as with MODIS retrievals. SLSTR retrieval, however, agree with MODIS retrievals that 2020 Covid impacts on AOD values (via comparisons to the pre-COVID 2019 reference) are at best minor and secondary to natural anomalies by wildfires and dust. In radiative transfer applications the dual view AOD data for the four years are processed in the MAC climatology environment to determine aerosol associated radiative effects for total aerosol and for anthropogenic aerosol. Even though the calculated radiative effects are affected by retrieval AOD retrieval tendencies, climate relevant TOA net-flux changes are consistent to result with AOD data from other satellite sensors and a general climatology: −0.9 W/m2 for total aerosol with a significant greenhouse effect and −0.8 and −0.2 W/m2 for anthropogenic aerosol with and without indirect effects, respectively. Aside from global averages, seasonal maps highlight the diversity of regional and seasonal radiative effects.

Pyruvic acid, an efficient catalyst in SO₃ hydrolysis and effective clustering agent in sulfuric acid-based new particle formation

The role of pyruvic acid (PA), one of the most abundant α-keto carboxylic acids in the atmosphere, was investigated both in the SO3 hydrolysis reaction to form sulfuric acid (SA) and in SA-based aerosol particle formation using quantum chemical calculations and a cluster dynamics model. We found that the PA-catalyzed SO3 hydrolysis is a thermodynamically driven transformation process, proceeding with a negative Gibbs free energy barrier, ca. −1 kcal mol−1 at 298 K, ~6.50 kcal mol−1 lower than that in the water-catalyzed SO3 hydrolysis. Results indicated that the PA-catalyzed reaction can potentially compete with the water-catalyzed SO3 reaction in SA production, especially in dry and polluted areas, where it is found to be ~two orders of magnitude more efficient that the water-catalyzed reaction. Given the effective stabilization of the PA-catalyzed SO3 hydrolysis product as SA•PA cluster, we proceeded to examine the PA clustering efficiency in sulfuric acid-pyruvic acid-ammonia (SA-PA-NH3) system. Our thermodynamic data used in the Atmospheric Cluster Dynamics Code indicated that under relevant tropospheric temperatures and concentrations of SA (106 cm3), PA (1010 cm3) and NH3 (1011 and 5 × 1011 cm3), of the PA-containing clusters, only clusters with one PA molecule, namely (SA)2•PA•(NH3)2, can participate to the particle formation, contributing by ~100 % to the net flux to aerosol particle formation at 238 K, exclusively. At higher temperatures (258 K and 278 K), however, the net flux to the particle formation is dominated by pure SA-NH3 clusters, while PA would rather evaporate from the clusters at high temperatures and not contribute to the particle formation. The enhancing effect of PA of examined by evaluating the ratio of the ternary SA-PA-NH3 cluster formation rate to binary SA-NH3 cluster formation rate. Our results show that while the enhancement factor of PA to the particle formation rate is almost insensitive to investigated temperatures and concentrations, it can be as high as 4.7 × 102 at 238 K and [NH3] = 1.3 × 1011 molecule cm−3. This indicates that PA may actively participate in aerosol formation, only in cold regions of the troposphere and highly NH3-polluted environments. The inclusion of this mechanism in aerosol models may definitely reduce uncertainties that prevail in modeling the aerosol impact on climate.

Ascaris suum Nutrient Uptake and Metabolic Release, and Modulation of Host Intestinal Nutrient Transport by Excretory-Secretory and Cuticle Antigens In Vitro

Ascaris suum, the most important pig parasite, also infects humans as a zoonotic pathogen. Malabsorption upon infection probably results from impaired nutrient transport, presumably mediated by the parasite´s excretory-secretory (ES) or cuticle somatic (CSO) antigens. The present study investigated the electrogenic transport (∆Isc) of glucose, alanine and the dipeptide glycyl-l-glutamine (glygln), as well as glucose net flux rates in pig jejunal tissue after in vitro exposure to adult A. suum total ES or CSO antigens in Ussing chambers. ∆Isc of glucose, alanine and glucose net flux rate were significantly decreased after one hour of exposure to total ES antigen. In contrast, CSO antigens increased the transport of glygln. Additionally, nutrient uptake and ES antigen pattern were compared in culture medium from untreated adult worms and those with sealed mouth and anal openings. Untreated worms completely absorbed glucose, while cuticular absorption in sealed worms led to 90% reduction. Amino acid absorption was 30% less effective in sealed worms, and ammonia excretion decreased by 20%. Overall, the results show that A. suum total ES antigen rapidly impairs nutrient transport in vitro. Future studies confirming the results in vivo, narrowing down the ES components responsible and investigating underlying molecular mechanisms are needed.

SeaFlux: harmonization of air–sea CO₂ fluxes from surface <i>p</i>CO₂ data products using a standardized approach

Air–sea flux of carbon dioxide (CO2) is a critical component of the global carbon cycle and the climate system with the ocean removing about a quarter of the CO2 emitted into the atmosphere by human activities over the last decade. A common approach to estimate this net flux of CO2 across the air–sea interface is the use of surface ocean CO2 observations and the computation of the flux through a bulk parameterization approach. Yet, the details for how this is done in order to arrive at a global ocean CO2 uptake estimate vary greatly, enhancing the spread of estimates. Here we introduce the ensemble data product, SeaFlux (Gregor and Fay, 2021, https://doi.org/10.5281/zenodo.5482547​​​​​​​, https://github.com/luke-gregor/pySeaFlux, last access: 9 September 2021​​​​​​​); this resource enables users to harmonize an ensemble of products that interpolate surface ocean CO2 observations to near-global coverage with a common methodology to fill in missing areas in the products. Further, the dataset provides the inputs to calculate fluxes in a consistent manner. Utilizing six global observation-based mapping products (CMEMS-FFNN, CSIR-ML6, JENA-MLS, JMA-MLR, MPI-SOMFFN, NIES-FNN), the SeaFlux ensemble approach adjusts for methodological inconsistencies in flux calculations. We address differences in spatial coverage of the surface ocean CO2 between the mapping products, which ultimately yields an increase in CO2 uptake of up to 17 % for some products. Fluxes are calculated using three wind products (CCMPv2, ERA5, and JRA55). Application of a scaled gas exchange coefficient has a greater impact on the resulting flux than solely the choice of wind product. With these adjustments, we present an ensemble of global surface ocean pCO2 and air–sea carbon flux estimates. This work aims to support the community effort to perform model–data intercomparisons which will help to identify missing fluxes as we strive to close the global carbon budget.

Carbon dynamics at the river-estuarine transition: a comparison among tributaries of Chesapeake Bay

Sources and transformation of C were quantified using mass balance and ecosystem metabolism data for the upper segments of the James, Pamunkey and Mattaponi Estuaries. The goal was to assess the role of external (river inputs &amp; tidal exchange) vs. internal (metabolism) drivers in influencing the forms and fluxes of C. C forms and their response to river discharge differed among the estuaries based on their physiographic setting. The James, which receives the bulk of inputs from upland areas (Piedmont and Mountain), exhibited a higher ratio of inorganic to organic C, and larger inputs of POC. The Pamunkey and Mattaponi receive a greater proportion of inputs from lowland (Coastal Plain) areas, which were characterized by low DIC and POC, and elevated DOC. We anticipated that transport processes would dominate during colder months when discharge is elevated and metabolism is low, and that biological processes would predominate in summer, leading to attenuation of C through-puts via de-gassing of CO2. Contrary to expectations, highest retention of OC occurred during periods of high through-put, as elevated discharge resulted in greater loading and retention of POC. In summer, internal cycling of C via production and respiration was large in comparison to external forcing despite the large riverine influence in these upper estuarine segments. The estuaries were found to be net heterotrophic based on retention of OC, export of DIC, low GPP relative to ER, and a net flux of CO2 to the atmosphere. In the James, greater contributions from phytoplankton production resulted in a closer balance between GPP and ER, with autochthonous production exceeding allochthonous inputs. Combining the mass balance and metabolism data with bioenergetics provided a basis for estimating the proportion of C inputs utilized by the dominant metazoan. The findings suggest that invasive catfish utilize 15 % of total OM inputs and up to 40 % of allochthonous inputs to the James.

Harmonization of global surface ocean pCO₂ mapped products and their flux calculations; an improved estimate of the ocean carbon sink

Air-sea flux of carbon dioxide (CO2) is a critical component of the global carbon cycle and the climate system with the ocean removing about a quarter of the CO2 emitted into the atmosphere by human activities over the last decade. A common approach to estimate this net flux of CO2 across the air-sea interface is the use of surface ocean CO2 observations and the computation of the flux through a bulk parameterization approach. Yet, the details for how this is done in order to arrive at a global ocean CO2 uptake estimate varies greatly, unnecessarily enhancing the uncertainties. Here we reduce some of these uncertainties by harmonizing an ensemble of products that interpolate surface ocean CO2 observations to near global coverage. We propose a common methodology to fill in missing areas in the products and to calculate fluxes and present a new estimate of the net flux. The ensemble data product, SeaFlux (Fay et al. (2021), doi.org/10.5281/zenodo.4133802, https://github.com/luke-gregor/SeaFlux), accounts for the diversity of the underlying mapping methodologies. Utilizing six global observation-based mapping products (CMEMS-FFNN, CSIR-ML6, JENA-MLS, JMA-MLR, MPI-SOMFFN, NIES-FNN), the SeaFlux ensemble approach adjusts for methodological inconsistencies in flux calculations that can result in an average error of 15 % in global mean flux estimates. We address differences in spatial coverage of the surface ocean CO2 between the mapping products which ultimately yields an increase in CO2 uptake of up to 19 % for some products. Fluxes are calculated using three wind products (CCMPv2, ERA5, and JRA55). Application of an appropriately scaled gas exchange coefficient has a greater impact on the resulting flux than solely the choice of wind product. With these adjustments, we derive an improved ensemble of surface ocean pCO2 and air-sea carbon flux estimates. The SeaFlux ensemble suggests a global mean uptake of CO2 from the atmosphere of 1.92 +/- 0.35 PgC yr-1. This work aims to support the community effort to perform model-data intercomparisons which will help to identify missing fluxes as we strive to close the global carbon budget.