Assessing the effectiveness of oxathiapiprolin towards Phytophthora agathidicida, the causal agent of kauri dieback disease

Phytophthora species cause disease and devastation of plants in ecological and horticultural settings worldwide. A recently identified species, P. agathidicida, infects and ultimately kills the treasured kauri trees (Agathis australis) that are endemic to New Zealand. Currently there are few options for managing kauri dieback disease. In this study, we sought to assess the toxicity of the oomycide oxathiapiprolin against several life cycle stages of two geographically distinct P. agathidicida isolates. The effective concentration to inhibit 50% of mycelial growth (EC50) was determined to be approximately 0.1 ng/ml, indicating that P. agathidicida mycelia are more sensitive to oxathiapiprolin than those from most other Phytophthora species that have been studied. Oxathiapiprolin was also highly effective at inhibiting the germination of zoospores (EC50 = 2–9 ng/ml for the two isolates) and oospores (complete inhibition at 100 ng/ml). In addition, oxathiapiprolin delayed the onset of detached kauri leaf infection in a dose-dependent manner. Collectively, the results presented here highlight the significant potential of oxathiapiprolin as a tool to aid in the control of kauri dieback disease.

Profile of the in silico secretome of the palm dieback pathogen, a fungus that puts natural oases at risk

Understanding biotic changes that occur alongside climate change constitute a research priority of global significance. Here, we address a plant pathogen that poses a serious threat to life on natural oases, where climate change is already taking a toll and severely impacting human subsistence. Fusarium oxysporum f. sp. albedinis is a pathogen that causes dieback disease on date palms, a tree that provides several critical ecosystem services in natural oases; and consequently, of major importance in this vulnerable habitat. Here, we assess the current state of global pathogen spread, we annotate the genome of a sequenced pathogen strain isolated from the native range and we analyse its in silico secretome. The palm dieback pathogen secretes a large arsenal of effector candidates including a variety of toxins, a distinguished profile of secreted in xylem proteins (SIX) as well as an expanded protein family with an N-terminal conserved motif [SG]PC[KR]P that could be involved in interactions with host membranes. Using agrobiodiversity as a strategy to decrease pathogen infectivity, while providing short term resilient solutions, seems to be widely overcome by the pathogen. Hence, the urgent need for future mechanistic research on the palm dieback disease and a better understanding of pathogen genetic diversity.

Detecting Phytophthora cinnamomi associated with dieback disease on Carya cathayensis using loop-mediated isothermal amplification

Chinese hickory (Carya cathayensis Sarg.) is an economically and ecologically important nut plant in China. Dieback and basal stem necrosis have been observed in the plants since 2016, and its recent spread has significantly affected plant growth and nut production. Therefore, a survey was conducted to evaluate the disease incidence at five sites in Linan County, China. The highest incidence was recorded at the Tuankou site at up to 11.39% in 2019. The oomycete, Phytophthora cinnamomi, was isolated from symptomatic plant tissue and plantation soil using baiting and selective media-based detection methods and identified. Artificial infection with the representative P. cinnamomi ST402 isolate produced vertically elongated discolorations in the outer xylem and necrotic symptoms in C. cathayensis seedlings in a greenhouse trial. Molecular detections based on loop-mediated isothermal amplification (LAMP) specific to P. cinnamomi ST402 were conducted. Result indicated that LAMP detection showed a high coherence level with the baiting assays for P. cinnamomi detection in the field. This study provides the evidence of existence of high-pathogenic P. cinnamomi in the C. cathayensis plantation soil in China and the insights into a convenient tool developed for conducting field monitoring of this aggressive pathogen.

Antifungal activity of extracts of Melia azedarach and Ageratum conyzoides against Lasiodiplodia pseudotheobromae through in vitro test

Lasiodiplodia pseudotheobromae is one of the pathogens of the cocoa dieback disease. Currently, the disease is considered a significant disease in cocoa, which is a newly emerging disease in Sulawesi. The control tools and methods remain unexplored comprehensively. The main objective of this study was to evaluate Melia azedarach and Ageratum conyzoides leaf extract to inhibit the growth of the L. pseudotheobromae. Three different concentrations were applied for each weed extract, namely: 1%, 3%, and 5%. The experiment was conducted through the poison food technique method both in solid medium and liquid medium. M. azedarach and A. conyzoides were significantly inhibited the colony growth of L. pseudotheobromae in all concentrations in solid medium. However, A. conyzoides 5% performed well to suppress the colony growth of L. pseudotheobromae (42.7%), followed by M. azedarach 5% (16.0%). The mycelium biomass of L. pseudotheobromae was significantly inhibited by M. azedarach and A. conyzoides as well. A. conyzoides 5% showed a higher inhibition of the fungal biomass either wet biomass (90.3%) or dry biomass (95.5%), followed by M. azedarach 5% both wet biomass (85.6%) and dry biomass (78.1%). M. azedarach and A. conyzoides remain to inhibit the colony growth and fungal biomass regardless of the type of concentrations. M. azedarach and A. conyzoides can potentially be an option for controlling dieback disease caused by L. pseudotheobromae.

Detecting Phytophthora cinnamomi associated with dieback disease on Carya cathayensis using loop-mediated isothermal amplification

Chinese hickory (Carya cathayensis Sarg.) is an economically and ecologically important nut plant in China. Dieback and basal stem necrosis have been observed in the plants since 2016, and its recent spread has significantly affected plant growth and nut production. Therefore, a survey was conducted to evaluate the disease incidence at five sites in Linan County, China. The highest incidence was recorded at the Tuankou site at up to 11.39% in 2019. The oomycete, Phytophthora cinnamomi, was isolated from symptomatic plant tissue and plantation soil using baiting and selective media-based detection methods and identified. Artificial infection with the representative P. cinnamomi ST402 isolate produced vertically elongated discolorations in the outer xylem and necrotic symptoms in C. cathayensis seedlings in a greenhouse trial. Molecular detections based on loop-mediated isothermal amplification (LAMP) specific to P. cinnamomi ST402 were conducted. Result indicated that LAMP detection showed a high coherence level with the baiting assays for P. cinnamomi detection in the field. This study provides the evidence of existence of high-pathogenic P. cinnamomi in the C. cathayensis plantation soil in China and the insights into a convenient tool developed for conducting field monitoring of this aggressive pathogen.

Identification of Burkholderia and Penicillium isolates from kauri (Agathis australis) soils that inhibit the mycelial growth of Phytophthora agathidicida

Phytophthora agathidicida is a highly virulent pathogen of kauri (Agathis australis) and the causal agent of dieback disease in New Zealand’s kauri forests. This study aimed to identify microbial isolates isolated from kauri forest soils that inhibited the growth of P. agathidicida. Three different forms of in vitro bioassays were used to assess the inhibition of each isolate on the mycelial growth of P. agathidicida. Furthermore, head space (HS) solid-phase micro-extraction coupled with gas chromatography-mass spectrometry (SPME-GCMS) was performed to identify if the microbial isolates emitted volatile organic compounds (VOCs), which may be contributing to inhibition. This research identified several bacterial isolates belonging to the genus Burkholderia that inhibited the mycelial growth of P. agathidicida. Furthermore, several VOCs produced by these isolates were putatively identified, which may be responsible for the inhibition observed in the bioassays. Several isolates of Penicillium were identified that inhibit Phytophthora agathidicida, with the culture filtrate of one isolate being found to strongly inhibit P. agathidicida mycelial growth. These isolates of Burkholderia and Penicillium appear to exhibit multiple modes of antagonism against P. agathidicida, including microbial competition and the production of diffusible and volatile anti-microbial compounds. Although further research is needed to better define their mechanisms of inhibition, these findings have identified candidate microbial antagonists of P. agathidicida.

A Review of Omics Technologies and Bioinformatics to Accelerate Improvement of Papaya Traits

Papaya (Carica papaya) is an economically important fruit crop that is mostly planted in tropical and subtropical regions. Major diseases of papaya, such as the papaya dieback disease (PDD), papaya ringspot virus (PRSV) disease, and papaya sticky disease (PSD), have caused large yield and economic losses in papaya-producing countries worldwide. Postharvest losses have also contributed to the decline in papaya production. Hence, there is an urgent need to secure the production of papaya for a growing world population. Integration of omics resources in crop breeding is anticipated in order to facilitate better-designed crops in the breeding programme. In papaya research, the application of omics and bioinformatics approaches are gradually increased and are underway. Hence, this review focuses on addressing omics technologies and bioinformatics that are used in papaya research. To date, four traits of the papaya have been studied using omics and bioinformatics approaches, which include its ripening process, abiotic stress, disease resistance, and fruit quality (i.e., sweetness, fruit shape, and fruit size). This review also highlights the potential of genetics and genomics data, as well as the systems biology approach that can be applied in a papaya-breeding programme in the near future.

The impact of ash dieback on veteran trees in southwestern Sweden

Ash dieback (Hymenoscyphus fraxineus) is a fungal disease which affects ash throughout Sweden. Monitoring to study of the impact of ash dieback on veteran trees was undertaken in southwest Sweden in 2009, 2011, 2013, 2015, and 2020. The study found that 94.5% of the ash trees observed were affected by ash dieback disease in 2020 compared with 62% in 2009. 70 of the studied ash trees have died (21%) since the monitoring began. In 2009 there was no relationship between girth and ash dieback, but in 2020 the correlation between girth and the impact of ash dieback was statistically significant. In 2020, also for the first time during monitoring, the ash trees in the shade were significantly more affected by ash dieback, compared with trees standing in the open. This difference was not detected in 2013 or 2015. The effect of ash dieback on pollarded trees has varied between the years studied, but in 2020 there is no longer any significant difference between the pollarded and the non-pollarded ash trees. There was however a significant difference in the mortality rates between the groups of trees, with ash trees pollarded in more recent times having the highest mortality. Therefore, the recommendation in relation to veteran trees with ash dieback is that all pruning on veteran ash trees should be avoided. Pollarding should only be done on ash pollards that are in a regular cutting cycle and are not showing any symptoms of ash dieback. If possible, clear around old ash trees if they are in shaded conditions. Given that there are relatively few studies on the impact of ash dieback on veteran ash trees, the results of this study should also be relevant outside of Sweden and for the management of ash trees in non-woodland situations. Key words: Ash dieback, pollards, veteran trees, Hymenoscyphus fraxineus, ash