square pyramidal geometry
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Molecules ◽  
2021 ◽  
Vol 26 (22) ◽  
pp. 6772
Author(s):  
Lavinia L. Ruta ◽  
Ileana C. Farcasanu ◽  
Mihaela Bacalum ◽  
Mina Răileanu ◽  
Arpad Mihai Rostas ◽  
...  

Novel complexes of type [Cu(N-N)(dmtp)2(OH2)](ClO4)2·dmtp ((1) N-N: 2,2′-bipyridine; (2) L: 1,10-phenantroline and dmtp: 5,7-dimethyl-1,2,4-triazolo[1,5-a]pyrimidine) were designed in order to obtain biologically active compounds. Complexes were characterized as mononuclear species that crystallized in the space group P-1 of the triclinic system with a square pyramidal geometry around the copper (II). In addition to the antiproliferative effect on murine melanoma B16 cells, complex (1) exhibited low toxicity on normal BJ cells and did not affect membrane integrity. Complex (2) proved to be a more potent antimicrobial in comparison with (1), but both compounds were more active in comparison with dmtp—both against planktonic cells and biofilms. A stronger antimicrobial and antibiofilm effect was noticed against the Gram-positive strains, including methicillin-resistant Staphylococcus aureus (MRSA). Both electron paramagnetic resonance (EPR) and Saccharomyces cerevisiae studies indicated that the complexes were scavengers rather than reactive oxygen species promoters. Their DNA intercalating capacity was evidenced by modifications in both absorption and fluorescence spectra. Furthermore, both complexes exhibited nuclease-like activity, which increased in the presence of hydrogen peroxide.


2021 ◽  
Vol 76 (3-4) ◽  
pp. 193-199
Author(s):  
Muhammad Said ◽  
Sadia Rehman ◽  
Muhammad Ikram ◽  
Hizbullah Khan ◽  
Carola Schulzke

Abstract Three guanidine-derived tri-substituted ligands viz. N-pivaloyl-N′,N″-bis-(2-methoxyphenyl)guanidine (L1), N-pivaloyl-N′-(2-methoxyphenyl)-N″-phenylguanidine (L2) and N-pivaloyl-N′-(2-methoxyphenyl)-N″-(2-tolyl)guanidine (L3) were reacted with Cu(II) acetate to produce the corresponding complexes. The significance of the substituent on N″ for the resulting molecular structures and their packing in the solid state has been studied with respect to the structural specifics of the corresponding Cu(II) complexes. The key characteristic of the guanidine-based metal complexation with Cu(II) is the formation of an essentially square planar core with an N2O2 donor set. As an exception, in the complex of L1, the substituent’s methoxy moiety also interacts with the Cu(II) center to generate a square-pyramidal geometry. The hydroxyl groups of the imidic acid tautomeric forms of L1–L3, in addition to N″, are also bonded to Cu(II) in all three complexes rather than the nitrogen donor of the guanidine motif.


2021 ◽  
Vol 33 (2) ◽  
pp. 359-366
Author(s):  
Habibar Chowdhury ◽  
Chandan Adhikary

Two copper(II) azido complexes of the types mononuclear [Cu(TMEDA)2(N3)2] (1) and dinuclear [Cu(TMEDA)(μ1,1-N3)(N3)]2 (2) [TMEDA = trimethylenediamine; N3 – = azide ion] have been synthesized and characterized. X-ray structural analysis revealed that each copper(II) center in complex 1 adopts a distorted octahedron geometry with a CuN6 chromophore ligated through four N atoms of two different symmetrical TMEDA ligands as bidentate chelator and two N atoms of two terminal azides. In complex 2, each copper(II) center adopts a distorted square pyramidal geometry with a CuN5 chromophore ligated through two N atoms of TMEDA as bidentate chelator and two N atoms of two different azides as μ1,1-N3 bridging mode and one N atom of terminal azide ion. The two copper centers are connected through double μ1,1-N3 bridges affording a dinuclear structure with Cu···Cu separation 3.327(2) Å. In crystalline state, mononuclear units in complex 1 are associated through intermolecular N-H···N and C-H···N hydrogen bonds to form a 2D sheet structure viewed along crystallographic b-axis, whereas dinuclear entities in complex 2 are propagated through intermolecular N-H···N and C-H···N hydrogen bonds to form a 3D network structure viewed along crystallographic a-axis. The Variable-temperature magnetic susceptibility measurement evidenced a dominant antiferromagnetic interaction between the metal centers through μ1,1-azide bridges in complex 2 with J = − 0.40 cm-1. The antibacterial activities of the complexes have also been studied.


2021 ◽  
Vol 19 (1) ◽  
pp. 735-744
Author(s):  
Samar O. Aljazzar

Abstract Metformin is one of the most effective drugs for the treatment of type II diabetes. Two new mixed ligand complexes of vanadyl(ii) and chromium(iii) ions with the general formula [VOL1L2]SO4 and [CrL1L2(Cl)2]Cl, respectively, where L1 is the metformin and L2 is the glycine amino acid, have been synthesized in MeOH solvent with 1:1:1 stoichiometry and characterized by several spectroscopic techniques. The spectroscopic data suggested that the [VOL1L2]SO4 complex possesses a square pyramidal geometry, where the [CrL1L2(Cl)2]Cl complex possesses an octahedral geometry. The L1 ligand coordinated to the VO(ii) and Cr(iii) ions via the N atoms of the imino (‒C═NH) groups, where the L2 ligand coordinated via the O atom of the carboxylate group (COO) and the N atom of the amino group (NH2). The interaction of ligands L1 and L2 with the metal ions leads to complexes that have organized nanoscale structures with a main diameter of ∼14 nm for the [CrL1L2(Cl)2]Cl complex and ∼40 nm for the [VOL1L2]SO4 complex.


2021 ◽  
Vol 50 (6) ◽  
pp. 2243-2252
Author(s):  
Nayanthara Asok ◽  
Joshua R. Gaffen ◽  
Ekadashi Pradhan ◽  
Tao Zeng ◽  
Thomas Baumgartner

Reaction of dithienophospholes with quinones provides hypervalent phosphorus species with square-pyramidal geometry and promising reactivity.


Crystals ◽  
2020 ◽  
Vol 10 (12) ◽  
pp. 1105
Author(s):  
Linan Dun ◽  
Baosheng Zhang ◽  
Jiajun Wang ◽  
He Wang ◽  
Xue Chen ◽  
...  

A new coordination polymer was synthesized under hydrothermal conditions, namely [Zn(Bpy)(DHTA)0.5]n (DHTA = 2,5-dihydroxy-1,4-terephthalic acid tetra-anion, Bpy = 2,2’-bipyridine). There is one Zn(II) ion in [Zn(Bpy)(DHTA)0.5]n, the metal center Zn(II) is five-coordinated and forms a slightly twisted square pyramidal geometry. It remains stable at temperatures as high as 380 °C, and a sharp drop in weight is found in the temperature range of 380–570 °C. The calculation results show that the residual is zinc(II) oxide (ZnO). The emission peak of the complex appears at 365 nm (λex = 366 nm). The photoluminescence results suggest that the complex has potential as a new luminescence material. At the same time, in luminescence explorations experiments, the complex showed a high degree of selectivity and sensitivity to organic solvents, acetone (DMK) and metal ions (Fe3+).


IUCrData ◽  
2020 ◽  
Vol 5 (9) ◽  
Author(s):  
Rafael A. Adrian ◽  
Hadi D. Arman

In the title complex, [Zn(CF3O3S)Cl(C15H10ClN3)]·CH3CN, the zinc(II) core is fivefold coordinated by one chloride, one trifluoromethanesulfonate O atom and three terpyridine N atoms in a slightly distorted square-pyramidal geometry. The structure provides a distinct example amongst other zinc(II) 4-chloroterpyridine complexes because of the unusual planarity of the coordinated chloride, the short length of the Zn—N bond opposite to the chloride ligand [1.9572 (15) Å], and the presence of an elongated Zn—O bond [2.3911 (14) Å] in the coordinated trifluoromethanesulfonate ion. A molecule of acetonitrile is also found in the asymmetric unit of the title complex.


2020 ◽  
Vol 76 (9) ◽  
pp. 1520-1524
Author(s):  
Anand Gupta ◽  
Rajesh Deka ◽  
Ray J. Butcher ◽  
Harkesh B. Singh

In the title salt, di-μ-oxido-bis{2,6-bis[(dimethylamino)methyl]phenyl-κC 1}tellurium(IV) bis[trichlorido(dimethyl sulfoxide-κS)platinate(II)], (C24H38N4O2Te2)[PdCl3(C2H6OS)]2, which crystallizes in the triclinic space group P\overline{1}, each Te atom is in a distorted five-coordinated TeO2N2C square-pyramidal geometry (τ values of 0.026 and 0.001) with the C atoms of the phenyl rings occupying the apical positions. The phenyl rings in the [C24H38N4O2Te2]2+ cation are in a cis arrangement to enable this species to participate in Te...Cl cation–anion interactions. There are also C—H...O interactions involving the dimethyl sulfoxide ligands and numerous cation–anion and anion–anion C—H...Cl interactions, which link the ions into a complex three-dimensional array.


2020 ◽  
Vol 76 (9) ◽  
pp. 1539-1542
Author(s):  
Natsuki Katsuumi ◽  
Yuika Onami ◽  
Sayantan Pradhan ◽  
Tomoyuki Haraguchi ◽  
Takashiro Akitsu

In the title complex molecule, [Cu(C11H11NO4)(CH4O)(H2O)], the Cu atom is coordinated in a distorted square-pyramidal geometry by a tridentate ligand synthesized from L-threonine and salicylaldehyde, one methanol molecule and one water molecule. In the crystal, the molecules show intra- and intermolecular O—H...O hydrogen bonds. The Hirshfeld surface analysis indicates that the most important contributions to the packing are H...H (49.4%) and H...O/O...H (31.3%) contacts.


2020 ◽  
Vol 76 (9) ◽  
pp. 921-926
Author(s):  
Jetnipat Songkerdthong ◽  
Phimphaka Harding ◽  
David J. Harding

Two conformational polymorphs of (N,N-dibutyldithiocarbamato-κ2 S,S′)[tris(3,5-diphenylpyrazol-1-yl-κN 2)hydroborato]cobalt(II), [Co(C45H34BN6)(C9H18NS2)] or [TpPh2Co(S2CNBu2)], 1, are accessible by recrystallization from dichloromethane–methanol to give orthorhombic polymorph 1a, while slow evaporation from acetonitrile produces triclinic polymorph 1b. The two polymorphs have been characterized by IR spectroscopy and single-crystal X-ray crystallography at 150 K. Polymorphs 1a and 1b crystallize in the orthorhombic space group Pbca and the triclinic space group P-1, respectively. The polymorphs have a trans (1a) and cis (1b) orientation of the butyl groups with respect to the S2CN plane of the dithiocarbamate ligand, which results in an intermediate five-coordinate geometry for 1a and a square-pyramidal geometry for 1b. Hirshfeld surface analysis reveals minor differences between the two polymorphs, with 1a exhibiting stronger C—H...S interactions and 1b favouring C—H...π interactions.


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