Productivity of durum wheat cultivars depending on seeding rates in the Chuvash Republic

The results of two-year experimental data on the growth, development and productivity of spring durum wheat cultivars - Bezenchukskaya Niva and Bezenchukskaya Zolotistaya - in the Chuvash Republic were considered. It was found that decrease in the seeding rate of germinating seeds (from 7 to 3 million per 1 ha) resulted in reducing of the growing period in the studied cultivars of spring durum wheat by 6-7 days. Seeding rate of 5 million seeds per 1 ha provided the maximum density of spike-bearing stems due to the best indicators of general and productive tillering. The formation of the largest main spike with a high grain content in Bezenchukskaya Niva cultivar was noted at the seeding rate from 3 to 5 million seeds per 1 ha. Increase in the seeding rate ( 5 million seeds) led to a decrease in the parameters of the main spike. Analysis of Bezenchukskaya Zolotistaya yield structure did not reveal clear patterns in the change in length and grain size of the main spike resulted from the seeding rate. However, the highest 1000-seed weight (50.4 g) was obtained in the variant with a seeding rate of 6 million seeds pieces. Compared to the control, the maximum yield increase in cv. Bezenchukskaya Niva (1.2 t/ha) was obtained in the variant with a seeding rate of 5 million seeds per 1 ha. The highest yield of cv. Bezenchukskaya Zolotistaya (3.23 t/ha) was obtained at a seeding rate of 6 million seeds per 1 ha.

Effect of Visualization on Muscular Activation for Stability in Adolescent Ballet Students

The purpose of this study is to determine whether commonly used visualization techniques, whose results have been solely anecdotal, produce tangible, scientific results in muscular activation and improvement to ballet balances. Ballet training methods include imagery techniques however, much of this practice is solely based on the experience of the instructor and its results are anecdotal so that there are many gaps between research on imagery and dance instruction. Few published studies focus on the effect of the imagery training for dance students on either motor and nonmotor outcomes (Abraham, 2019). A survey will be administered to ballet instructors to determine the most used visualization cues for stability. Three adolescent female ballet students studying under said instructors will be asked to perform three balances. Surface electromyography data will be taken on the gluteus maximus, hip adductors, and abdominal oblique. The length of balance will also be taken. The dancers will then be exposed to a short visualization session or stimulus of anatomical images with arrows showing bodily adjustments and targeted muscles accompanied by verbal cues developed based on the instructor techniques from the survey. The same balances and data will be taken following the session. Results will be compared to the control data taken prior to the session to reveal whether the visualization training had significant results by determining statistically significant changes in balance times and changes in neuron spikes following spike analysis. Dancers will also be asked for qualitative feedback. Subject 2 yielded a significant increase in length of balance in all three types and the most consistent increase in neuron spikes in all of their muscles. This suggests a positive correlation between an increase in the degree of neuron activation or recruitment of those stability muscles and the ability for an individual to balance. This was also supported by increased confidence they felt in their balances after the visualization session. Subject 1 yielded no significant change in balance time before and after the visualization stimulus and the number of neuron spikes decreased after the session. This suggests that decreased activity in the tested muscles for stability resulted in lower balance times. This lack of muscular activation could be attributed to fatigue as reported by the dancer. The rest of the balances yielded significant increases in lengths of balance which were accompanied by increases in neuron spikes in the gluteus maximus and hip adductors for Degage a la Seconde and in the gluteus maximus for Releve en Retire. Subject 3 yielded insignificant changes in balance times for the first two types of balances but produced increases in the number of neuron spikes in most of the tested muscles in all of the balances. Reports from the dancer of being “less wobbly” the unexpected data to be attributed to an allocation to quality of the balance. The results on length of balances, number of neuron spikes, and confidence/reflection feedback obtained by this study supports the scientific validity of commonly-used visualization techniques in ballet by showcasing a higher degree of activation in the targeted stability muscles and longer average balance lengths should ensue following visualization training. Results also suggest that visualization techniques and stimuli for stability are the most effective when applied to learning unfamiliar movements. Further research could apply such visualization techniques to other movements, and even outside of dance.

P-sort: an open-source software for cerebellar neurophysiology

Algorithms that perform spike sorting depend on waveforms to cluster spikes. However, a cerebellar Purkinje-cell produces two types of spikes; simple and complex spikes. A complex spike coincides with the suppression of generating simple spikes. Here, we recorded neurophysiological data from three species and developed a spike analysis software named P-sort that relies on this statistical property to improve both the detection and the attribution of simple and complex spikes in the cerebellum.

A Structural Update of Neutralizing Epitopes on the HIV Envelope, a Moving Target

Antibodies that can neutralize diverse HIV-1 strains develop in ~10–20% of HIV-1 infected individuals, and their elicitation is a goal of vaccine design. Such antibodies can also serve as therapeutics for those who have already been infected with the virus. Structural characterizations of broadly reactive antibodies in complex with the HIV-1 spike indicate that there are a limited number of sites of vulnerability on the spike. Analysis of their structures can help reveal commonalities that would be useful in vaccine design and provide insights on combinations of antibodies that can be used to minimize the incidence of viral resistance mutations. In this review, we give an update on recent structures determined of the spike in complex with broadly neutralizing antibodies in the context of all epitopes on the HIV-1 spike identified to date.

Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses

Defining the unique protein features of SARS-CoV-2, the viral agent causing Coronavirus Disease 2019, may guide efforts to control this pathogen. We examined proteins encoded by the Sarbecoviruses closest to SARS-CoV-2 using profile Hidden Markov Model similarities to identify features unique to SARS-CoV-2. Consistent with previous reports, a small set of bat and pangolin-derived Sarbecoviruses show the greatest similarity to SARS-CoV-2. The analysis provided a measure of total proteome similarity and showed that a small subset of bat Sarbecoviruses are closely related but unlikely to be the direct source of SARS-CoV-2. Spike analysis reveals that the current SARS-CoV-2 variants of concern have sampled only 36% of the possible spikes changes which have occurred historically in Sarbecovirus evolution. It is likely that new SARS-CoV-2 variants with changes in these regions are compatible with virus replication and are to be expected in the coming months, unless global viral replication is severely reduced.

A spike analysis method for characterizing neurons based on phase locking and scaling to the interval between two behavioral events

Phase-Scaling analysis is a novel technique to unbiasedly characterize the temporal dependency of functional neuron activity on two behavioral events and objectively determine the latency and form of the activity change. This powerful analysis can uncover several classes of latently functioning neurons that have thus far been overlooked, which may participate differently in intermediate processes of a brain function. The Phase-Scaling analysis will yield profound insights into neural mechanisms for processing internal information.

Performance of a new molecular assay for the detection of gastrointestinal pathogens

Introduction. Conventional diagnostic laboratory algorithms for determining the cause of infectious gastroenteritis include culture, biochemical identification and immunoassays. In addition, multiplex PCR-based testing has advanced into the gastroenterology diagnostic arena in recent years. Aim. The purpose of this study was to evaluate the performance of a new molecular test (Diagnostics Solutions Laboratory GI-MAP) for the detection of bacterial and parasitic pathogens in stool samples spiked with known organisms. Methodology. Faeces from a healthy human subject were pooled into a standard matrix and screened for the absence of bacteria, parasites and Helicobacter pylori antigen. Once confirmed negative single faecal aliquots from the matrix were spiked with solely one pathogen-type from a panel of 14 bacterial pathogens or one of 2 parasitic pathogens at a density of 5×106 organisms ml−1. Sixteen spiked samples in appropriate transport media were sent to two testing labs, specifically a reference site using the PCR-based BioFire FilmArray Gastrointestinal Panel, and a second lab using the GI-MAP assay. Seven negative control samples comprised solely of stool matrix were also submitted. Results. Significant variability was found when the GI-MAP assay was used to test normal stool matrix with and without known bacteria and parasites at densities well within the expected limits of detection. The GI-MAP assay displayed a sensitivity of 80 % and a specificity of only 26 % due to many false positive results. This assay also reported quantitative numbers for pathogens. The BioFire FilmArray Gastrointestinal Panel achieved a sensitivity and specificity of 100 %. Conclusion. The highly variable results for the GI-MAP assay were unexpected due to the precise pre-spike analysis and the overall maturation of nucleic acid amplification methods within the industry. Problematic to this assay is the poor level of specificity displayed by this assay reporting the presence of several pathogens, which could cause clinicians to treat with antibacterial and/or antiparasitic agents in the absence of any true pathogens.

Revisional Analysis of Electroencephalography and Magnetoencephalography Based on Comprehensive Epilepsy Conference

This chapter highlights the importance of the revised analysis of electroencephalography (EEG) and magnetoencephalography (MEG) spike source estimation based on comprehensive case conference discussion. It discusses two typical cases of localization-related epilepsy: case 1 as a simple situation and case 2 as a complicated situation. No “gold standard” for epileptic spike analysis in EEG or MEG has been established, so several methods must be adopted to achieve the most reasonable interpretation. However, such intense and revisional analyses may be too time-consuming in clinical settings and result in arbitrary conclusions. Therefore, the authors currently use a simple method first, that is, a single dipole model for the peak or preceding upward slope of unaveraged single spikes. In the following case conference, EEG and MEG data are reviewed with seizure semiology, anatomical magnetic resonance imaging (MRI), and 18F-fluorodeoxyglucose positron emission tomography (FDG-PET). If all the findings almost agree, the clinical decision can be easily made. If not, revisional analysis of EEG/MEG is recommended using averaged spikes and principal component analysis models as well as distributed source models. In addition to EEG/MEG, the authors often order revisional analysis and additional MRI and FDG-PET studies after the conference. Even further history taking will be recommended if necessary.

The importance of accurate developmental staging

This article comments on: Fernández-Gómez J, Talle B, Tidy A, Wilson ZA. 2020. Accurate staging of reproduction development in Cadenza wheat by non-destructive spike analysis. Journal of Experimental Botany71, 3475–3484.