Catenulispora pinistramenti sp. nov., novel actinobacteria isolated from pine forest soil in Poland

The taxonomic status of two filamentous actinobacteria, isolates NF23 and NL8T, recovered from the litter layer of a pine forest soil in Poland was established in a genome-based polyphasic study. The isolates showed a combination of chemotaxonomic, morphological and physiological properties associated with their classification in the genus Catenulispora . They formed a well supported lineage within the Catenulispora 16S rRNA gene tree and were most closely related to the type strains of Catenulispora acidiphila (99.1%), Catenulispora pinisilvae (99.9 %) and Catenulispora rubra (99.1 %), and like them, were found to have large genomes (10.8 and 11.5 Mbp, respectively). A phylogenomic tree based on the draft genomes of isolates NF23 and NL8T and their phylogenetic neighbours showed that they formed a distinct branch in the Catenulispora clade that was most closely related to C. pinisilvae DSM 111109T. The isolates shared a combination of genomic, genotypic and phenotypic features, and had high average nucleotide index (ANI) and digital DNA:DNA hybridization (dDDH) similarities consistent with their assignment to the same species. The isolates were distinguished from the C. acidiphila, C. pinisilvae and C. rubra strains by a wealth of taxonomic data and by low ANI (84.9–93.9 %) and dDDH (29.6–54.7 %) values. It is proposed that the isolates be classified in the genus Catenulispora as C. pinistramenti sp. nov. with isolate NL8T (=DSM 111110T=PCM 3045T) as the type strain. The genomes of strains NF23 and NL8T are rich in natural product-biosynthetic gene clusters hence these strains have the potential to synthesize new specialised metabolites.

Collembolan Assemblages Response to Wild Boars (Sus scrofa L.) Rooting in Pine Forest Soil

Collembola are an important component of soil communities in all terrestrial ecosystems. In temperate coniferous forests, they are one of the most numerous invertebrate groups, and disturbances that change their density and structure may have negative effects on soil fertility and productivity. Our goal was to determine whether intensive rooting in the forest floor by wild boars affects edaphic Collembola. Soil samples from three paired rooted and non-rooted plots in Scots pine stands were taken twice a year to study the impact of such bioturbation on forest collembolan assemblages. Substantial changes in the taxonomic and functional structure of the collembolan assemblages were identified in all disturbed plots. The abundance and number of species significantly decreased in the bioturbated forest floor. The shares of atmobiotic and hemiedaphic springtails increased at the expense of epedaphic forms. Most of the differences were evident shortly after grubbing but were not significant a few months later. The decline in moisture in disturbed soil could be an explanatory factor causing the differences in the structure and abundance of collembolan assemblages between the bioturbated and intact plots. Our study revealed that large mammals ubiquitous in forest ecosystems can be an important disturbing factor for soil microarthropods. Intensive wild boar rooting in the forest floor had a strong negative effect on the occurrence and abundance of Collembola. This kind of bioturbation also modified the functional structure of assemblages, which in turn may have important consequences for the soil food web and above- and belowground interactions.

Collembolan Assemblages Response to Wild Boars (Sus Scrofa L.) Rooting in Pine Forest Soil

Background: Collembola are an important component of soil communities in all terrestrial ecosystems. In temperate coniferous forests, they are one of the most numerous invertebrate groups and disturbances that change their density and structure may have negative effects on soil fertility and productivity. Our goal was to determine whether intensive rooting in the forest floor by wild boars affects edaphic Collembola. Soil samples from three paired rooted and non-rooted plots in Scots pine stands were taken twice a year to study the impact of such bioturbation on forest collembolan assemblages. Results: Substantial changes in the taxonomic and functional structure of the collembolan assemblages were identified in all disturbed plots. The abundance and number of species significantly decreased in the bioturbated forest floor. The shares of atmobiotic and hemiedaphic springtails increased at the expense of epedaphic forms. Most of the differences were evident shortly after grubbing but were not significant a few months later. The decline in moisture in disturbed soil could be an explanatory factor causing the differences in the structure and abundance of collembolan assemblages between the bioturbated and intact plots.Conclusions:Our study revealed that large mammals ubiquitous in forest ecosystems can be an important disturbing factor for soil microarthropods. Intensive wild boar rooting in the forest floor had a strong negative effect on the occurrence and abundance of Collembola. This kind of bioturbation caused also the modification to the functional structure of assemblages, which in turn may have important consequences for soil food web and above- and below-ground interactions.

Impact of land use change on organic carbon sequestration in Arenosol

Conversion of arable soils into other land uses can stabilize and increase accumulation of soil organic carbon (SOC) and in addition prevent deterioration in its properties. The data has shown changes in SOC sequestration in Ap horizon after arable land conversion (1995–2015) into managed grassland, abandoned and pine afforested. SOC in Arenosol topsoil was positively affected by long term fallow and conversion into grassland. Abandoned land and fertilised managed grassland accumulated significantly more SOC, 48% and 38% respectively compared with arable land. In unfertilised managed grassland SOC stocks decreased 2.3% during 21 years, but losses were lower than in fertilised arable land. Pine afforestation of loamy sand helped to reduce the intensity of SOM mineralization compared to arable land. The Ap horizon thickness in pine forest soil increased from 28 to 31 cm during 21 years period. However, SOC stock decreased by 1% due to reduction in carbon concentration.

Intensity and Persistence of Soil Water Repellency in Pine Forest Soil in a Temperate Continental Climate under Drought Conditions

Although soil water repellency (SWR) has been reported under different soils, climates, and vegetation types of the world, especially in forest land and following wildfires, the understanding of this variable continues to be rather limited. This study presented the characterization of SWR from wild fire measurements in a Scots pine Peucedano-Pinetum forest in the Kampinos National Park (central Poland), which is characterized by a temperate continental climate. The main objectives were: [i] To evaluate the potential occurrence, intensity, and persistence of soil water repellency in the surface layers of podzolized rusty soils during a dry summer; [ii] to determine whether a wildfire increased SWR, compared to the unburnt condition of soil; and [iii] to identify changes in hydrophobicity 13 months after a fire. The Water Drop Penetration Time (WDPT) test was used to assess persistence and intensity of soil SWR. Hydrophobicity is a natural phenomenon during periods of drought in temperate continental climates. The extreme class of SWR was observed in surface layers of up to 20 cm. A higher hydrophobicity was noted in the older habitats of the Peucedano-Pinetum forest. Maximum WDPT values (10,800 s) were found for an older ecosystem cover, during a dry summer. SWR in fire-affected soils is dependent on the intensity of the fire, as well as displaying spatial and seasonal variability. Thirteen months after a fire, the highest variability in the occurrence of non-wettability, was recorded in the surface layers of areas affected by a weak fire. A positive relationship between soil pH and WDPT values was determined to a 20 cm depth. Prolonged dry periods resulting from global climate change, may enhance the effects of increasing SWR; it therefore seems reasonable for future research on biosphere–climate interactions, to take the presence of hydrophobicity into account.

Comparison of plant growth-promoting rhizobacteria in a pine forest soil and an agricultural soil

The load and diversity of plant growth-promoting rhizobacteria (PGPR) are used as biomarkers to evaluate the health and quality of the soil. In the present study, the diversity of PGPRs and the physicochemical properties of the soil were used as comparative biomarkers in two adjacent soils (a pine forest soil and an agricultural soil) of the same region in Mexico City in order to investigate the effects of land use change. Bacterial diversity and physicochemical properties differed between the two soils. In the pine forest soil, PGPR were distributed at similar proportions in the Proteobacteria (29.41%), Actinobacteria (29.41%) and Firmicutes (35.29%) phyla, whereas the remaining PGPR were in Bacteroidetes (5.88%). In the agricultural soil, most PGPR belonged to the Phylum Firmicutes (50%), with the remaining belonging to Proteobacteria (22.73%), Actinobacteria (18.18%) and Bacteroidetes (9.09%). Percentages of bacteria producing indole acetic acid (90.91%) and siderophores (40.91%) were higher in agricultural soil. A canonical correspondence analysis (CCA) was used to correlate PGPR with the physicochemical characteristics of the soils. The CCA revealed that differences between both soils and the physicochemical properties of the soils affected isolated bacterial species and their distribution. These results demonstrate that the PGPR are correlated with the physicochemical properties of the soil, exhibiting differences between an agricultural soil and a pine forest soil.