Reproductive Parasitism and Positive Fitness Effects of Heritable Microbes

Author(s):  
Georgia C Drew ◽  
Crystal L Frost ◽  
Gregory DD Hurst
2021 ◽  
Vol 11 (2) ◽  
Author(s):  
Saurin Bipin Parikh ◽  
Nelson Castilho Coelho ◽  
Anne-Ruxandra Carvunis

Abstract Microbial growth characteristics have long been used to investigate fundamental questions of biology. Colony-based high-throughput screens enable parallel fitness estimation of thousands of individual strains using colony growth as a proxy for fitness. However, fitness estimation is complicated by spatial biases affecting colony growth, including uneven nutrient distribution, agar surface irregularities, and batch effects. Analytical methods that have been developed to correct for these spatial biases rely on the following assumptions: (1) that fitness effects are normally distributed, and (2) that most genetic perturbations lead to minor changes in fitness. Although reasonable for many applications, these assumptions are not always warranted and can limit the ability to detect small fitness effects. Beneficial fitness effects, in particular, are notoriously difficult to detect under these assumptions. Here, we developed the linear interpolation-based detector (LI Detector) framework to enable sensitive colony-based screening without making prior assumptions about the underlying distribution of fitness effects. The LI Detector uses a grid of reference colonies to assign a relative fitness value to every colony on the plate. We show that the LI Detector is effective in correcting for spatial biases and equally sensitive toward increase and decrease in fitness. LI Detector offers a tunable system that allows the user to identify small fitness effects with unprecedented sensitivity and specificity. LI Detector can be utilized to develop and refine gene–gene and gene–environment interaction networks of colony-forming organisms, including yeast, by increasing the range of fitness effects that can be reliably detected.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Nicola A. Thompson ◽  
Marco Ranzani ◽  
Louise van der Weyden ◽  
Vivek Iyer ◽  
Victoria Offord ◽  
...  

AbstractGenetic redundancy has evolved as a way for human cells to survive the loss of genes that are single copy and essential in other organisms, but also allows tumours to survive despite having highly rearranged genomes. In this study we CRISPR screen 1191 gene pairs, including paralogues and known and predicted synthetic lethal interactions to identify 105 gene combinations whose co-disruption results in a loss of cellular fitness. 27 pairs influence fitness across multiple cell lines including the paralogues FAM50A/FAM50B, two genes of unknown function. Silencing of FAM50B occurs across a range of tumour types and in this context disruption of FAM50A reduces cellular fitness whilst promoting micronucleus formation and extensive perturbation of transcriptional programmes. Our studies reveal the fitness effects of FAM50A/FAM50B in cancer cells.


Author(s):  
Richard P Meisel

Abstract In species with polygenic sex determination, multiple male- and female-determining loci on different proto-sex chromosomes segregate as polymorphisms within populations. The extent to which these polymorphisms are at stable equilibria is not yet resolved. Previous work demonstrated that polygenic sex determination is most likely to be maintained as a stable polymorphism when the proto-sex chromosomes have opposite (sexually antagonistic) fitness effects in males and females. However, these models usually consider polygenic sex determination systems with only two proto-sex chromosomes, or they do not broadly consider the dominance of the alleles under selection. To address these shortcomings, I used forward population genetic simulations to identify selection pressures that can maintain polygenic sex determination under different dominance scenarios in a system with more than two proto-sex chromosomes (modeled after the house fly). I found that overdominant fitness effects of male-determining proto-Y chromosomes are more likely to maintain polygenic sex determination than dominant, recessive, or additive fitness effects. The overdominant fitness effects that maintain polygenic sex determination tend to have proto-Y chromosomes with sexually antagonistic effects (male-beneficial and female-detrimental). In contrast, dominant fitness effects that maintain polygenic sex determination tend to have sexually antagonistic multi-chromosomal genotypes, but the individual proto-sex chromosomes do not have sexually antagonistic effects. These results demonstrate that sexual antagonism can be an emergent property of the multi-chromosome genotype without individual sexually antagonistic chromosomes. My results further illustrate how the dominance of fitness effects has consequences for both the likelihood that polygenic sex determination will be maintained as well as the role sexually antagonistic selection is expected to play in maintaining the polymorphism.


Author(s):  
Clayton M. Dilks ◽  
Steffen R. Hahnel ◽  
Qicong Sheng ◽  
Lijiang Long ◽  
Patrick T. McGrath ◽  
...  

Behaviour ◽  
2017 ◽  
Vol 154 (7-8) ◽  
pp. 875-907 ◽  
Author(s):  
Erica S. Dunayer ◽  
Carol M. Berman

Throughout the primate order, individuals are highly motivated to handle infants that are not their own. Given the differing and often conflicting interests of the various participants in handling interactions (handler, infant, and mother), most functional hypotheses are specific to particular handling roles. Here we explore one hypothesis that may apply to all participants, but that has received relatively little attention: that handling may facilitate the formation and maintenance of social bonds. Using free-ranging rhesus macaques (Macaca mulatta) on Cayo Santiago, we examine the relationship between infant handling in the early weeks and the strength and diversity of infant social bonds months later, when infant relationships were more independent from those of their mothers. Our results largely confirm the influence of several social characteristics (kinship, rank, sex, and age) in governing handling interactions. They also provide the first evidence that early handling is associated with later social bonds that are stronger than expected based on these social characteristics. However, the enhancement of bonds is largely confined to related handlers; frequent unrelated handlers did not generally go on to form strong bonds with infants. This suggests that kinship may be a sort of prerequisite to the enhancement of social bonds via handling. Given the adaptive benefits of strong social bonds among adult primates, future research should investigate whether early infant handling may have longer term fitness effects.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Alexey A. Grum-Grzhimaylo ◽  
Eric Bastiaans ◽  
Joost van den Heuvel ◽  
Cristina Berenguer Millanes ◽  
Alfons J. M. Debets ◽  
...  

AbstractSome multicellular organisms can fuse because mergers potentially provide mutual benefits. However, experimental evolution in the fungus Neurospora crassa has demonstrated that free fusion of mycelia favours cheater lineages, but the mechanism and evolutionary dynamics of this exploitation are unknown. Here we show, paradoxically, that all convergently evolved cheater lineages have similar fusion deficiencies. These mutants are unable to initiate fusion but retain access to wild-type mycelia that fuse with them. This asymmetry reduces cheater-mutant contributions to somatic substrate-bound hyphal networks, but increases representation of their nuclei in the aerial reproductive hyphae. Cheaters only benefit when relatively rare and likely impose genetic load reminiscent of germline senescence. We show that the consequences of somatic fusion can be unequally distributed among fusion partners, with the passive non-fusing partner profiting more. We discuss how our findings may relate to the extensive variation in fusion frequency of fungi found in nature.


Author(s):  
Alicia Callejas-Chavero ◽  
Diana Martínez-Hernández ◽  
Arturo Flores-Martínez ◽  
Alejandra Moncada-Orellana ◽  
Yahveh Diaz-Quiñones ◽  
...  
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