Image denoising for magnetic resonance imaging medical images using improved generalized cross‐validation based on the diffusivity function

Author(s):  
Sreedhar Kollem ◽  
Katta Ramalinga Reddy ◽  
Duggirala Srinivasa Rao ◽  
Chintha Rajendra Prasad ◽  
V. Malathy ◽  
...  
2020 ◽  
Vol 2 (1) ◽  
Author(s):  
Marta M Correia ◽  
Timothy Rittman ◽  
Christopher L Barnes ◽  
Ian T Coyle-Gilchrist ◽  
Boyd Ghosh ◽  
...  

Abstract The early and accurate differential diagnosis of parkinsonian disorders is still a significant challenge for clinicians. In recent years, a number of studies have used magnetic resonance imaging data combined with machine learning and statistical classifiers to successfully differentiate between different forms of Parkinsonism. However, several questions and methodological issues remain, to minimize bias and artefact-driven classification. In this study, we compared different approaches for feature selection, as well as different magnetic resonance imaging modalities, with well-matched patient groups and tightly controlling for data quality issues related to patient motion. Our sample was drawn from a cohort of 69 healthy controls, and patients with idiopathic Parkinson’s disease (n = 35), progressive supranuclear palsy Richardson’s syndrome (n = 52) and corticobasal syndrome (n = 36). Participants underwent standardized T1-weighted and diffusion-weighted magnetic resonance imaging. Strict data quality control and group matching reduced the control and patient numbers to 43, 32, 33 and 26, respectively. We compared two different methods for feature selection and dimensionality reduction: whole-brain principal components analysis, and an anatomical region-of-interest based approach. In both cases, support vector machines were used to construct a statistical model for pairwise classification of healthy controls and patients. The accuracy of each model was estimated using a leave-two-out cross-validation approach, as well as an independent validation using a different set of subjects. Our cross-validation results suggest that using principal components analysis for feature extraction provides higher classification accuracies when compared to a region-of-interest based approach. However, the differences between the two feature extraction methods were significantly reduced when an independent sample was used for validation, suggesting that the principal components analysis approach may be more vulnerable to overfitting with cross-validation. Both T1-weighted and diffusion magnetic resonance imaging data could be used to successfully differentiate between subject groups, with neither modality outperforming the other across all pairwise comparisons in the cross-validation analysis. However, features obtained from diffusion magnetic resonance imaging data resulted in significantly higher classification accuracies when an independent validation cohort was used. Overall, our results support the use of statistical classification approaches for differential diagnosis of parkinsonian disorders. However, classification accuracy can be affected by group size, age, sex and movement artefacts. With appropriate controls and out-of-sample cross validation, diagnostic biomarker evaluation including magnetic resonance imaging based classifiers may be an important adjunct to clinical evaluation.


Author(s):  
G. V. Cherepenko

The paper provides an example from expert practice, during which a head image obtained using magnetic resonance imaging (MRI) was used as a sample. It is proposed to include an MRI image in a number of objects and samples considered by the current portrait examination technique. The nature of the suitability of such an object for the production of portrait examination is determined. Practical recommendations are given for working with the appropriate software to get the most visual picture.


2020 ◽  
Author(s):  
BUGAO XU

<p>This study aims to explore new categorization that characterizes the distribution clusters of visceral and subcutaneous adipose tissues (VAT and SAT) measured by magnetic resonance imaging (MRI); to analyze the relationship between the VAT-SAT distribution patterns and the novel body shape descriptors (BSDs); and to develop a classifier to predict the fat distribution clusters using the BSDs. 66 male and 54 female participants were scanned by magnetic resonance imaging (MRI) and a stereovision body imaging (SBI) to measure participants’ abdominal VAT and SAT volumes and the BSDs. A fuzzy <i>c-</i>means algorithm was used to form the inherent grouping clusters of abdominal fat distributions. A support-vector-machine (SVM) classifier, with an embedded feature selection scheme, was employed to determine an optimal subset of the BSDs for predicting internal fat distributions. A five-fold cross-validation procedure was used to prevent over-fitting in the classification. The classification results of the BSDs were compared with those of the traditional anthropometric measurements and the Dual Energy X-Ray Absorptiometry (DXA) measurements.<b> </b>Four clusters were identified for abdominal fat distributions: low VAT and SAT, elevated VAT and SAT, higher SAT, and higher VAT. The cross-validation accuracies of the traditional anthropometric, DXA and BSD measurements are 85.0%, 87.5% and 90%, respectively. </p>


2021 ◽  
Vol 1 (2) ◽  
pp. 71-80
Author(s):  
Revella E. A. Armya Armya ◽  
Adnan Mohsin Abdulazeez

Medical image segmentation plays an essential role in computer-aided diagnostic systems in various applications. Therefore, researchers are attracted to apply new algorithms for medical image processing because it is a massive investment in developing medical imaging methods such as dermatoscopy, X-rays, microscopy, ultrasound, computed tomography (CT), positron emission tomography, and magnetic resonance imaging. (Magnetic Resonance Imaging), So segmentation of medical images is considered one of the most important medical imaging processes because it extracts the field of interest from the Return on investment (ROI) through an automatic or semi-automatic process. The medical image is divided into regions based on the specific descriptions, such as tissue/organ division in medical applications for border detection, tumor detection/segmentation, and comprehensive and accurate detection. Several methods of segmentation have been proposed in the literature, but their efficacy is difficult to compare. To better address, this issue, a variety of measurement standards have been suggested to decide the consistency of the segmentation outcome. Unsupervised ranking criteria use some of the statistics in the hash score based on the original picture. The key aim of this paper is to study some literature on unsupervised algorithms (K-mean, K-medoids) and to compare the working efficiency of unsupervised algorithms with different types of medical images.


2012 ◽  
Author(s):  
Hui Tang ◽  
Reinhard Hameeteman ◽  
Arnaud Gelas ◽  
Theo van Walsum

Intensity inhomogeneities often occur in medical images, especially when using magnetic resonance imaging. In these images, the standard Chan-and-Vese levelset segmentation method may not work properly, as it assumes constant intensity distributions for foreground and background. Recently, a novel method was published that models the intensities as piece-wise smooth, and thus is more suitable to segment images with intensity homogeneities. However, this method was not yet implemented in ITK. This submission introduces our implementation of the region-scalable-fitting levelset segmentation method within the ITKv4 levelset framework.


2020 ◽  
Author(s):  
BUGAO XU

<p>This study aims to explore new categorization that characterizes the distribution clusters of visceral and subcutaneous adipose tissues (VAT and SAT) measured by magnetic resonance imaging (MRI); to analyze the relationship between the VAT-SAT distribution patterns and the novel body shape descriptors (BSDs); and to develop a classifier to predict the fat distribution clusters using the BSDs. 66 male and 54 female participants were scanned by magnetic resonance imaging (MRI) and a stereovision body imaging (SBI) to measure participants’ abdominal VAT and SAT volumes and the BSDs. A fuzzy <i>c-</i>means algorithm was used to form the inherent grouping clusters of abdominal fat distributions. A support-vector-machine (SVM) classifier, with an embedded feature selection scheme, was employed to determine an optimal subset of the BSDs for predicting internal fat distributions. A five-fold cross-validation procedure was used to prevent over-fitting in the classification. The classification results of the BSDs were compared with those of the traditional anthropometric measurements and the Dual Energy X-Ray Absorptiometry (DXA) measurements.<b> </b>Four clusters were identified for abdominal fat distributions: low VAT and SAT, elevated VAT and SAT, higher SAT, and higher VAT. The cross-validation accuracies of the traditional anthropometric, DXA and BSD measurements are 85.0%, 87.5% and 90%, respectively. </p>


2019 ◽  
Author(s):  
J Wrobel ◽  
ML Martin ◽  
R Bakshi ◽  
PA Calabresi ◽  
M Elliot ◽  
...  

AbstractIn multisite neuroimaging studies there is often unwanted technical variation across scanners and sites. These “scanner effects” can hinder detection of biological features of interest, produce inconsistent results, and lead to spurious associations. We assess scanner effects in two brain magnetic resonance imaging (MRI) studies where subjects were measured on multiple scanners within a short time frame, so that one could assume any differences between images were due to technical rather than biological effects. We propose mica (multisite image harmonization by CDF alignment), a tool to harmonize images taken on different scanners by identifying and removing within-subject scanner effects. Our goals in the present study were to (1) establish a method that removes scanner effects by leveraging multiple scans collected on the same subject, and, building on this, (2) develop a technique to quantify scanner effects in large multisite trials so these can be reduced as a preprocessing step. We found that unharmonized images were highly variable across site and scanner type, and our method effectively removed this variability by warping intensity distributions. We further studied the ability to predict intensity harmonization results for a scan taken on an existing subject at a new site using cross-validation.


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