Brain tumor segmentation using K‐means clustering and deep learning with synthetic data augmentation for classification

2021 ◽  
Author(s):  
Amjad Rehman Khan ◽  
Siraj Khan ◽  
Majid Harouni ◽  
Rashid Abbasi ◽  
Sajid Iqbal ◽  
...  
Keyword(s):  
Deep Learning ◽  
Brain Tumor ◽  
Data Augmentation ◽  
Synthetic Data ◽  
Tumor Segmentation ◽  
Brain Tumor Segmentation

scholarly journals TumorGAN: A Multi-Modal Data Augmentation Framework for Brain Tumor Segmentation

Sensors ◽  
2020 ◽  
Vol 20 (15) ◽  
pp. 4203 ◽  
Author(s):  
Qingyun Li ◽  
Zhibin Yu ◽  
Yubo Wang ◽  
Haiyong Zheng
Keyword(s):  
Brain Tumor ◽  
Data Augmentation ◽  
Labor Demand ◽  
Synthetic Data ◽  
Generative Adversarial Networks ◽  
Tumor Segmentation ◽  
Imaging Data ◽  
Brain Tumor Segmentation ◽  
Data Set ◽  
Image Pairs

The high human labor demand involved in collecting paired medical imaging data severely impedes the application of deep learning methods to medical image processing tasks such as tumor segmentation. The situation is further worsened when collecting multi-modal image pairs. However, this issue can be resolved through the help of generative adversarial networks, which can be used to generate realistic images. In this work, we propose a novel framework, named TumorGAN, to generate image segmentation pairs based on unpaired adversarial training. To improve the quality of the generated images, we introduce a regional perceptual loss to enhance the performance of the discriminator. We also develop a regional L1 loss to constrain the color of the imaged brain tissue. Finally, we verify the performance of TumorGAN on a public brain tumor data set, BraTS 2017. The experimental results demonstrate that the synthetic data pairs generated by our proposed method can practically improve tumor segmentation performance when applied to segmentation network training.

scholarly journals Deep Learning for Brain Tumor Segmentation: A Survey of State-of-the-Art

2021 ◽  
Vol 7 (2) ◽  
pp. 19
Author(s):  
Tirivangani Magadza ◽  
Serestina Viriri
Keyword(s):  
Image Analysis ◽  
Deep Learning ◽  
Brain Tumor ◽  
Quantitative Analysis ◽  
Medical Image ◽  
State Of The Art ◽  
Medical Image Analysis ◽  
Building Blocks ◽  
Tumor Segmentation ◽  
Brain Tumor Segmentation

Quantitative analysis of the brain tumors provides valuable information for understanding the tumor characteristics and treatment planning better. The accurate segmentation of lesions requires more than one image modalities with varying contrasts. As a result, manual segmentation, which is arguably the most accurate segmentation method, would be impractical for more extensive studies. Deep learning has recently emerged as a solution for quantitative analysis due to its record-shattering performance. However, medical image analysis has its unique challenges. This paper presents a review of state-of-the-art deep learning methods for brain tumor segmentation, clearly highlighting their building blocks and various strategies. We end with a critical discussion of open challenges in medical image analysis.

Brain Tumor Segmentation Based on Region of Interest-Aided Localization and Segmentation U-Net

2021 ◽  
Author(s):  
Shidong Li ◽  
Jianwei Liu ◽  
Zhanjie Song
Keyword(s):  
Image Processing ◽  
Deep Learning ◽  
Brain Tumor ◽  
Medical Image ◽  
Brain Mri ◽  
Medical Image Processing ◽  
Tumor Segmentation ◽  
Dice Similarity Coefficient ◽  
Brain Tumor Segmentation ◽  
The Impact

Abstract Since magnetic resonance imaging (MRI) has superior soft tissue contrast, contouring (brain) tumor accurately by MRI images is essential in medical image processing. Segmenting tumor accurately is immensely challenging, since tumor and normal tissues are often inextricably intertwined in the brain. It is also extremely time consuming manually. Late deep learning techniques start to show reasonable success in brain tumor segmentation automatically. The purpose of this study is to develop a new region-ofinterest-aided (ROI-aided) deep learning technique for automatic brain tumor MRI segmentation. The method consists of two major steps. Step one is to use a 2D network with U-Net architecture to localize the tumor ROI, which is to reduce the impact of normal tissue’s disturbance. Then a 3D U-Net is performed in step 2 for tumor segmentation within identified ROI. The proposed method is validated on MICCAI BraTS 2015 Challenge with 220 high Gliomas grade (HGG) and 54 low Gliomas grade (LGG) patients’ data. The Dice similarity coefficient and the Hausdorff distance between the manual tumor contour and that segmented by the proposed method are 0.876 ±0.068 and 3.594±1.347 mm, respectively. These numbers are indications that our proposed method is an effective ROI-aided deep learning strategy for brain MRI tumor segmentation, and a valid and useful tool in medical image processing.

Advancements of MRI-Based Brain Tumor Segmentation from Traditional to Recent Trends- A Review

2021 ◽  
Vol 17 ◽  
Author(s):  
Padmapriya Thiyagarajan ◽  
Sriramakrishnan Padmanaban ◽  
Kalaiselvi Thiruvenkadam ◽  
Somasundaram Karuppanagounder
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Brain Tumor ◽  
Human Head ◽  
Medical Community ◽  
Tumor Segmentation ◽  
Normal Brain ◽  
Learning Methods ◽  
Brain Tumor Segmentation ◽  
Mri Scans

Background: Among the brain-related diseases, brain tumor segmentation on magnetic resonance imaging (MRI) scans is one of the highly focused research domains in the medical community. Brain tumor segmentation is a very challenging task due to its asymmetric form and uncertain boundaries. This process segregates the tumor region into the active tumor, necrosis and edema from normal brain tissues such as white matter (WM), grey matter (GM), and cerebrospinal fluid (CSF). Introduction: The proposed paper analyzed the advancement of brain tumor segmentation from conventional image processing techniques, to deep learning through machine learning on MRI of human head scans. Method: State-of-the-art methods of these three techniques are investigated, and the merits and demerits are discussed. Results: The prime motivation of the paper is to instigate the young researchers towards the development of efficient brain tumor segmentation techniques using conventional and recent technologies. Conclusion: The proposed analysis concluded that the conventional and machine learning methods were mostly applied for brain tumor detection, whereas deep learning methods were good at tumor substructures segmentation.

Brain Tumor Detection using Hybrid Deep Learning with Genetic Algorithm

2021 ◽  
Vol 23 (09) ◽  
pp. 981-993
Author(s):  
T. Balamurugan ◽  
◽  
E. Gnanamanoharan ◽  
Keyword(s):  
Genetic Algorithm ◽  
Deep Learning ◽  
Brain Tumor ◽  
Advanced Technology ◽  
Great Promise ◽  
Support Vector ◽  
Tumor Segmentation ◽  
Feature Subset ◽  
Brain Tumor Segmentation ◽  
Mri Image

Brain tumor segmentation is a challenging task in the medical diagnosis. The primary aim of brain tumor segmentation is to produce precise characterizations of brain tumor areas using adequately placed masks. Deep learning techniques have shown great promise in recent years for solving various computer vision problems such as object detection, image classification, and semantic segmentation. Numerous deep learning-based approaches have been implemented to achieve excellent system performance in brain tumor segmentation. This article aims to comprehensively study the recently developed brain tumor segmentation technology based on deep learning in light of the most advanced technology and its performance. A genetic algorithm based on fuzzy C-means (FCM-GA) was used in this study to segment tumor regions from brain images. The input image is scaled to 256×256 during the preprocessing stage. FCM-GA segmented a preprocessed MRI image. This is a versatile advanced machine learning (ML) technique for locating objects in large datasets. The segmented image is then subjected to hybrid feature extraction (HFE) to improve the feature subset. To obtain the best feature value, Kernel Nearest Neighbor with a genetic algorithm (KNN-GA) is used in the feature selection process. The best feature value is fed into the RESNET classifier, which divides the MRI image into meningioma, glioma, and pituitary gland regions. Real-time data sets are used to validate the performance of the proposed hybrid method. The proposed method improves average classification accuracy by 7.99 % to existing Convolutional Neural Networks (CNN) and Support Vector Machines (SVM) classification algorithms

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