Microbial Life in Extreme Environments: Linking Geological and Microbiological Processes

Author(s):  
Hailiang Dong
Viruses ◽  
2019 ◽  
Vol 11 (2) ◽  
pp. 189 ◽  
Author(s):  
Sheree Yau ◽  
Mansha Seth-Pasricha

The poles constitute 14% of the Earth’s biosphere: The aquatic Arctic surrounded by land in the north, and the frozen Antarctic continent surrounded by the Southern Ocean. In spite of an extremely cold climate in addition to varied topographies, the polar aquatic regions are teeming with microbial life. Even in sub-glacial regions, cellular life has adapted to these extreme environments where perhaps there are traces of early microbes on Earth. As grazing by macrofauna is limited in most of these polar regions, viruses are being recognized for their role as important agents of mortality, thereby influencing the biogeochemical cycling of nutrients that, in turn, impact community dynamics at seasonal and spatial scales. Here, we review the viral diversity in aquatic polar regions that has been discovered in the last decade, most of which has been revealed by advances in genomics-enabled technologies, and we reflect on the vast extent of the still-to-be explored polar microbial diversity and its “enigmatic virosphere”.


2021 ◽  
Vol 9 (11) ◽  
pp. 2266
Author(s):  
Gabrielle Scheffer ◽  
Casey R. J. Hubert ◽  
Dennis R. Enning ◽  
Sven Lahme ◽  
Jaspreet Mand ◽  
...  

Oil reservoirs can represent extreme environments for microbial life due to low water availability, high salinity, high pressure and naturally occurring radionuclides. This study investigated the microbiome of saline formation water samples from a Gulf of Mexico oil reservoir. Metagenomic analysis and associated anaerobic enrichment cultures enabled investigations into metabolic potential for microbial activity and persistence in this environment given its high salinity (4.5%) and low nutrient availability. Preliminary 16S rRNA gene amplicon sequencing revealed very low microbial diversity. Accordingly, deep shotgun sequencing resulted in nine metagenome-assembled genomes (MAGs), including members of novel lineages QPJE01 (genus level) within the Halanaerobiaceae, and BM520 (family level) within the Bacteroidales. Genomes of the nine organisms included respiratory pathways such as nitrate reduction (in Arhodomonas, Flexistipes, Geotoga and Marinobacter MAGs) and thiosulfate reduction (in Arhodomonas, Flexistipes and Geotoga MAGs). Genomic evidence for adaptation to high salinity, withstanding radioactivity, and metal acquisition was also observed in different MAGs, possibly explaining their occurrence in this extreme habitat. Other metabolic features included the potential for quorum sensing and biofilm formation, and genes for forming endospores in some cases. Understanding the microbiomes of deep biosphere environments sheds light on the capabilities of uncultivated subsurface microorganisms and their potential roles in subsurface settings, including during oil recovery operations.


Geosciences ◽  
2019 ◽  
Vol 9 (9) ◽  
pp. 361
Author(s):  
Aleksandra Checinska Sielaff ◽  
Stephanie A. Smith

Mars is a planet of great interest in the search for signatures of past or present life beyond Earth. The years of research, and more advanced instrumentation, have yielded a lot of evidence which may be considered by the scientific community as proof of past or present habitability of Mars. Recent discoveries including seasonal methane releases and a subglacial lake are exciting, yet challenging findings. Concurrently, laboratory and environmental studies on the limits of microbial life in extreme environments on Earth broaden our knowledge of the possibility of Mars habitability. In this review, we aim to: (1) Discuss the characteristics of the Martian surface and subsurface that may be conducive to habitability either in the past or at present; (2) discuss laboratory-based studies on Earth that provide us with discoveries on the limits of life; and (3) summarize the current state of knowledge in terms of direction for future research.


2017 ◽  
Vol 39 (6) ◽  
pp. 4-9
Author(s):  
Donato Giovannelli ◽  
Costantino Vetriani

The history of our planet is underpinned by roughly 4 billion years of microbial evolution. From its emergence in a (probably) hot and anoxic environment, microbial life has evolved to colonize every available niche on our planet, including the inside and outside of other organisms. Yet, the emergence and evolution of microbial metabolism remains a major unsolved problem. How have microbes adapted to colonize every available environmental niche, including other organisms? How did they evolve to colonize mammals and our human ancestors? Answers to these questions will allow us to understand the emergence and evolution of life on our planet, inform the search for life elsewhere and, in the making, reveal important insight that will help us fight infections.


2021 ◽  
Vol 9 ◽  
Author(s):  
Ilaria Vaccarelli ◽  
Federica Matteucci ◽  
Marika Pellegrini ◽  
Fabio Bellatreccia ◽  
Maddalena Del Gallo

The terrestrial subsurface offers privileged sites both to search for microbial life and to observe still mostly unknown characteristic lithologies. In particular, caves represent natural laboratories to investigate unique minerogenetic processes and biotic interactions, connected to these phenomena. Manganese mineralization in cave environments provides a window to understand the complex Mn cycle and the development of microbial communities in special conditions, such as low constant temperature, absence of light and, in particular, low-energy environments. In the current study, we isolated and characterized Mn-samples taken from the cave “Grotta Grande dei Cervi,” L’Aquila, Central Italy, and we used a multidisciplinary approach to characterize them, with the purpose of understanding the biogeochemical processes in extreme environments. A chemical characterization of the samples was done by EDS; further investigations are underway with other multidisciplinary methodologies to understand whether the Mn laminae are related to biological processes. SEM investigations revealed microbial imprints, showing cell-like structures and suggesting that the cell-like shapes occur within internal laminae. A culture-independent approach was used to assess the possibility that biotic factors may be involved in the production of these mineralizations and to investigate the nature of the microbial community in these materials. A molecular approach was the first step to investigate the role of microorganisms in forming manganese oxides associated with water bearing rocks. DNA from the black deposits was extracted and sequence analyses of specimens were performed. Our data support the hypothesis that microorganisms may contribute to the mineralizations of manganese in this environment, providing new encouraging insight into the role of microorganisms in the Mn cycle and the processes of energy acquisition in unfavorable conditions, with relevant implications for astrobiology.


1980 ◽  
Vol 68 (1) ◽  
pp. 345
Author(s):  
G. E. Fogg ◽  
D. J. Kushner

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