Basics of a Light Microscopy Imaging System and Its Application in Biology

2001 ◽  
pp. 53-65 ◽  
Author(s):  
Lance Davidson ◽  
Raymond Keller
1997 ◽  
Vol 3 (S2) ◽  
pp. 853-854
Author(s):  
J.G. Lewis ◽  
A.M. Glazer

DELTASCAN is a new light microscopy imaging system developed and built in the Department of Physics, Oxford, UK. [1] It is able to separate out the contrast seen in a ‘cross-polars’ image into three components, | sin δ | (a function of the optical retardation), φ (the orientation of a section of the optical indicatrix) and Io (the transmittance). These three variables are plotted as separate coded colour images. With the present computer and apparatus the data is collected, processed and the images simultaneously drawn in approximately 40 seconds.DELTASCAN has an optical setup [2] based around a polarising microscope (Figure 5). The intensity through this optical setup can be shown to have the form:I = Io[1 + sin2(ωt−ϕ)sin δ] (1)where ω = frequency of the analyser, φ = orientation of cross section of the indicatrix and, δ = relative retardation which is related to a samples birefringence by δ = 2πΔnL/λ.


2015 ◽  
Author(s):  
Zhe Yin ◽  
Guodong Liu ◽  
Bingguo Liu ◽  
Yu Gan ◽  
Zhitao Zhuang ◽  
...  

2015 ◽  
Vol 44 (8) ◽  
pp. 811002
Author(s):  
王青青 WANG Qing-qing ◽  
郑继红 ZHENG Ji-hong ◽  
桂坤 GUI Kun ◽  
王康妮 WANG Kang-ni ◽  
李道萍 LI Dao-ping ◽  
...  

2012 ◽  
Vol 30 (30_suppl) ◽  
pp. 54-54
Author(s):  
Oleg Gusyatin ◽  
David Tims ◽  
Aladin Milutinovic ◽  
Chunsheng Jiang

54 Background: Fluorescence microscopy imaging system (OnQView, On-Q-ity, Waltham, MA) in combination with advanced cell capture techniques (OnQChip, On-Q-ity, Waltham, MA) provides necessary sensitivity to detect circulating tumor cells (CTCs) in a blood sample. The detection process involves automatic identification of CTC candidates from the collected imagery followed by CTC subclass identification. Subclass identification process is manual and usually leads to increased sample processing time. Methods: We have developed a fully automated CTC detection and classification system allowing for substantial increase in throughput while maintaining high sensitivity and specificity. Detection is accomplished by a robust segmentation technique. A set of 25 image-based features is automatically computed for each detected candidate. Features include texture measurements, morphology measurements, multichannel intensity and contextual characteristics. All CTC subclasses as well as artifact classes are manually labeled and verified by trained imaging technologists.A hierarchy of Multi-Layer Perceptron Neural Network (MLPNN) classifiers is then trained and used to identify and reject artifacts and to identify CTC subclasses. Results: A total of 27 prostate cancer patients and 33 normal controls with two 3.75ml blood samples per patient were used to validate techniques. Probability of successful artifact rejection was achieved to be 0.78 and probabilities of subsequent successful CTC subclass identification ranged between 0.79 and 0.98 (intact CTCs = 95%; irregular CTCs = 98%; fragmented CTCs = 82%). Conclusions: A fully automated CTC detection and classification system was developed. Testing was conducted with 27 prostate cancer patients and 33 normal controls to yield an artifact rejection probability of 0.78 and CTC subclass identification probabilities of 0.79 to 0.98.


2003 ◽  
Vol 12 (4) ◽  
pp. 455-461 ◽  
Author(s):  
Robert L. Bacallao ◽  
Weiming Yu ◽  
Kenneth W. Dunn ◽  
Carrie L. Phillips

2012 ◽  
Vol 35 (2) ◽  
pp. 79-84 ◽  
Author(s):  
Maristela L. Onozato ◽  
Veronica E. Klepeis ◽  
Yukako Yagi ◽  
Mari Mino-Kenudson

Background: Three-dimensional (3D)-reconstruction from paraffin embedded sections has been considered laborious and time-consuming. However, the high-resolution images of large object areas and different fields of view obtained by 3D-reconstruction make one wonder whether it can add a new insight into lung adenocarcinoma, the most frequent histology type of lung cancer characterized by its morphological heterogeneity.Objective: In this work, we tested whether an automated tissue sectioning machine and slide scanning system could generate precise 3D-reconstruction of microanatomy of the lung and help us better understand and define histologic subtypes of lung adenocarcinoma.Methods: Four formalin-fixed human lung adenocarcinoma resections were studied. Paraffin embedded tissues were sectioned with Kurabo-Automated tissue sectioning machine and serial sections were automatically stained and scanned with a Whole Slide Imaging system. The resulting stacks of images were 3D reconstructed by Pannoramic Viewer software.Results: Two of the four specimens contained islands of tumor cells detached in alveolar spaces that had not been described in any of the existing adenocarcinoma classifications. 3D-reconstruction revealed the details of spatial distribution and structural interaction of the tumor that could hardly be observed by 2D light microscopy studies. The islands of tumor cells extended into a deeper aspect of the tissue, and were interconnected with each other and with the main tumor with a solid pattern that was surrounded by the islands. The finding raises the question whether the islands of tumor cells should be classified into a solid pattern in the current classification.Conclusion: The combination of new technologies enabled us to build an effective 3D-reconstruction of resected lung adenocarcinomas. 3D-reconstruction may help us refine the classification of lung adenocarcinoma by adding detailed spatial/structural information to 2D light microscopy evaluation.


2005 ◽  
Author(s):  
N. MacKinnon ◽  
Ulrich Stange ◽  
Pierre M. Lane ◽  
Calum E. MacAulay

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